Wall clock time and date at job start Wed Apr 1 2020 04:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47285 * 2 1 4 4 O 1.42895 * 109.47082 * 120.00145 * 2 1 3 5 5 C 1.35660 * 117.00712 * 84.89835 * 4 2 1 6 6 C 1.38951 * 120.57308 * 354.12060 * 5 4 2 7 7 N 1.31627 * 120.79301 * 179.97438 * 6 5 4 8 8 C 1.31911 * 122.14473 * 359.72921 * 7 6 5 9 9 C 1.37967 * 121.07382 * 0.54468 * 8 7 6 10 10 C 1.39948 * 119.06774 * 359.46844 * 9 8 7 11 11 C 1.47843 * 120.96027 * 180.27730 * 10 9 8 12 12 O 1.21553 * 120.00033 * 180.02562 * 11 10 9 13 13 N 1.34781 * 120.00033 * 359.97438 * 11 10 9 14 14 C 1.46491 * 119.99947 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47187 * 180.02562 * 14 13 11 16 16 H 1.08996 * 115.51438 * 29.58382 * 15 14 13 17 17 C 1.52998 * 117.44315 * 244.23830 * 15 14 13 18 18 H 1.08996 * 119.54310 * 4.11813 * 17 15 14 19 19 C 1.57702 * 116.11023 * 161.63774 * 17 15 14 20 20 N 1.48138 * 104.67348 * 87.30860 * 19 17 15 21 21 C 1.36944 * 127.83646 * 139.77085 * 20 19 17 22 22 H 1.07994 * 119.99924 * 344.20699 * 21 20 19 23 23 C 1.38815 * 119.99918 * 164.20280 * 21 20 19 24 24 N 1.31622 * 120.00010 * 349.82512 * 23 21 20 25 25 Si 1.86799 * 120.00017 * 169.82422 * 23 21 20 26 26 H 1.48502 * 109.47042 * 90.00016 * 25 23 21 27 27 H 1.48501 * 109.47130 * 209.99980 * 25 23 21 28 28 H 1.48496 * 109.47054 * 330.00249 * 25 23 21 29 29 C 1.48150 * 104.32783 * 319.77490 * 20 19 17 30 30 C 1.53007 * 117.44565 * 174.99775 * 15 14 13 31 31 H 1.09002 * 119.53792 * 355.88217 * 30 15 14 32 32 H 1.09004 * 109.47076 * 60.00433 * 1 2 3 33 33 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47419 * 299.99959 * 1 2 3 35 35 H 1.09003 * 109.47301 * 239.99695 * 2 1 3 36 36 H 1.08992 * 109.47421 * 179.97438 * 3 2 1 37 37 H 1.09005 * 109.46447 * 300.00270 * 3 2 1 38 38 H 1.08996 * 109.46858 * 59.99698 * 3 2 1 39 39 H 1.08003 * 119.60647 * 359.96164 * 6 5 4 40 40 H 1.08005 * 119.46320 * 180.28717 * 8 7 6 41 41 H 1.08001 * 120.46341 * 179.75183 * 9 8 7 42 42 H 0.97002 * 119.99736 * 0.02562 * 13 11 10 43 43 H 1.09006 * 109.47558 * 299.99933 * 14 13 11 44 44 H 1.09005 * 109.47611 * 59.99943 * 14 13 11 45 45 H 1.08994 * 110.91902 * 328.23067 * 19 17 15 46 46 H 1.09005 * 109.93333 * 205.89108 * 19 17 15 47 47 H 0.96998 * 119.99906 * 180.02562 * 24 23 21 48 48 H 1.08997 * 110.40564 * 280.80601 * 29 20 19 49 49 H 1.09003 * 110.40677 * 158.36820 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.1103 -2.0245 1.0988 6 6 1.6507 -2.7135 -0.0169 7 7 1.7499 -4.0242 -0.0876 8 6 2.2877 -4.7406 0.8806 9 6 2.7656 -4.1420 2.0282 10 6 2.6843 -2.7505 2.1537 11 6 3.1890 -2.0652 3.3625 12 8 3.1092 -0.8557 3.4534 13 7 3.7367 -2.7815 4.3642 14 6 4.2363 -2.1025 5.5623 15 6 4.8036 -3.1374 6.5359 16 1 5.2173 -4.0357 6.0778 17 6 4.1010 -3.2949 7.8859 18 1 3.1928 -2.7274 8.0885 19 6 4.3973 -4.6301 8.6709 20 7 5.6177 -4.3394 9.4586 21 6 5.8964 -4.7158 10.7455 22 1 5.1032 -5.0652 11.3897 23 6 7.1985 -4.6482 11.2219 24 7 8.1923 -4.4172 10.3905 25 14 7.5402 -4.8849 13.0431 26 1 7.7778 -6.3245 13.3191 27 1 8.7424 -4.1022 13.4270 28 1 6.3719 -4.4161 13.8309 29 6 6.4684 -3.5491 8.5385 30 6 5.4835 -2.6149 7.8032 31 1 5.6051 -1.5409 7.9440 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 1.8933 -0.5139 -0.8900 36 1 3.1299 1.4425 0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6766 1.9563 0.8899 39 1 1.2065 -2.1672 -0.8359 40 1 2.3513 -5.8136 0.7751 41 1 3.2005 -4.7385 2.8165 42 1 3.8001 -3.7468 4.2918 43 1 5.0210 -1.4001 5.2813 44 1 3.4195 -1.5622 6.0410 45 1 4.5774 -5.4550 7.9816 46 1 3.5640 -4.8644 9.3335 47 1 9.1022 -4.3703 10.7233 48 1 6.9719 -4.2053 7.8285 49 1 7.1972 -2.9659 9.1013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978543875.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:12 Heat of formation + Delta-G solvation = 4.051413 kcal Electronic energy + Delta-G solvation = -29326.695822 eV Core-core repulsion = 25255.336203 eV Total energy + Delta-G solvation = -4071.359619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.08281 -40.67983 -39.94954 -39.42299 -36.37375 -35.08240 -34.51714 -33.40572 -32.53370 -31.26252 -29.04810 -28.66193 -28.22996 -26.91872 -25.54259 -24.53556 -22.83722 -22.43653 -21.88810 -21.33741 -20.85169 -19.62311 -18.81793 -18.52982 -18.05711 -16.93142 -16.83491 -16.67826 -16.48902 -16.20993 -15.89937 -15.55878 -15.25619 -15.21066 -14.93662 -14.82876 -14.58417 -14.36774 -14.16588 -14.03122 -13.63187 -13.37994 -13.35962 -13.17851 -13.01186 -12.87690 -12.75097 -12.69767 -12.31944 -12.04297 -11.96352 -11.89381 -11.85978 -11.75485 -11.43947 -10.94945 -10.86602 -10.71147 -10.62917 -10.44179 -10.08415 -9.50018 -8.90051 -7.92407 -5.27674 -0.39175 0.06544 1.46192 1.47894 1.57250 1.83046 1.94260 2.04619 2.47638 2.73525 2.77292 3.25499 3.38357 3.47924 3.59973 3.62031 3.68824 3.72263 3.85475 3.86872 3.96123 4.08976 4.12873 4.19218 4.26642 4.32613 4.43436 4.55869 4.61899 4.66440 4.68710 4.75135 4.77887 4.80819 4.83918 4.86592 4.93364 5.02904 5.17879 5.20505 5.23975 5.34185 5.41163 5.45311 5.45631 5.53436 5.66421 6.17975 6.22684 6.47374 6.81751 7.01179 7.13371 7.68790 8.47126 9.21669 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023371 B = 0.001826 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.777598 B =15328.733367 C =16038.353315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.059 3.941 3 C -0.146 4.146 4 O -0.298 6.298 5 C 0.123 3.877 6 C 0.011 3.989 7 N -0.447 5.447 8 C 0.050 3.950 9 C -0.087 4.087 10 C -0.152 4.152 11 C 0.557 3.443 12 O -0.558 6.558 13 N -0.707 5.707 14 C 0.165 3.835 15 C -0.112 4.112 16 H 0.113 0.887 17 C -0.158 4.158 18 H 0.128 0.872 19 C 0.149 3.851 20 N -0.621 5.621 21 C -0.240 4.240 22 H 0.080 0.920 23 C -0.064 4.064 24 N -0.946 5.946 25 Si 0.979 3.021 26 H -0.283 1.283 27 H -0.294 1.294 28 H -0.270 1.270 29 C 0.190 3.810 30 C -0.179 4.179 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.106 0.894 38 H 0.055 0.945 39 H 0.184 0.816 40 H 0.196 0.804 41 H 0.176 0.824 42 H 0.415 0.585 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.034 0.966 46 H 0.054 0.946 47 H 0.250 0.750 48 H 0.005 0.995 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.589 4.591 -25.710 30.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.003 3.997 3 C -0.203 4.203 4 O -0.208 6.208 5 C 0.072 3.928 6 C -0.149 4.149 7 N -0.157 5.157 8 C -0.105 4.105 9 C -0.107 4.107 10 C -0.164 4.164 11 C 0.344 3.656 12 O -0.436 6.436 13 N -0.360 5.360 14 C 0.042 3.958 15 C -0.131 4.131 16 H 0.131 0.869 17 C -0.177 4.177 18 H 0.145 0.855 19 C 0.024 3.976 20 N -0.345 5.345 21 C -0.369 4.369 22 H 0.098 0.902 23 C -0.257 4.257 24 N -0.594 5.594 25 Si 0.806 3.194 26 H -0.210 1.210 27 H -0.220 1.220 28 H -0.194 1.194 29 C 0.065 3.935 30 C -0.199 4.199 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.074 0.926 39 H 0.201 0.799 40 H 0.213 0.787 41 H 0.193 0.807 42 H 0.253 0.747 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.023 0.977 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.720 5.161 -25.974 30.797 hybrid contribution 0.980 -0.016 1.795 2.045 sum -14.740 5.146 -24.179 28.782 Atomic orbital electron populations 1.22384 0.93590 1.03191 1.04193 1.22928 0.95580 0.94521 0.86633 1.21862 1.01672 0.92841 1.03876 1.86407 1.79498 1.14973 1.39969 1.20350 0.93280 0.84748 0.94407 1.23289 1.03014 0.91023 0.97560 1.67438 1.11447 1.06998 1.29851 1.23151 0.96445 1.02055 0.88893 1.22610 0.96266 0.91654 1.00175 1.19933 1.06430 0.94785 0.95241 1.18201 0.77822 0.86581 0.83001 1.90811 1.57130 1.15065 1.80628 1.45731 1.61219 1.11598 1.17459 1.20683 0.98187 0.93365 0.83597 1.22422 1.01837 1.00290 0.88534 0.86879 1.24650 0.95988 0.99117 0.97971 0.85451 1.21881 0.89264 0.93338 0.93101 1.45461 1.17146 1.60765 1.11107 1.19356 0.92823 1.37732 0.86982 0.90214 1.25735 0.95228 1.02327 1.02431 1.70096 0.98674 1.56198 1.34447 0.85089 0.77231 0.77440 0.79597 1.20977 1.22007 1.19448 1.20789 0.91662 0.91029 0.90045 1.23866 0.96549 0.99341 1.00154 0.87222 0.88083 0.92069 0.92438 0.89100 0.92584 0.87528 0.92562 0.79924 0.78703 0.80676 0.74728 0.91395 0.91420 0.94799 0.92719 0.94141 0.97738 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 9.17 71.98 0.66 -1.27 16 2 C 0.06 0.83 2.85 30.59 0.09 0.92 16 3 C -0.15 -1.87 9.56 71.98 0.69 -1.18 16 4 O -0.30 -6.92 8.03 -69.50 -0.56 -7.48 16 5 C 0.12 2.61 6.63 22.95 0.15 2.77 16 6 C 0.01 0.18 9.43 84.89 0.80 0.98 16 7 N -0.45 -7.70 10.32 -195.56 -2.02 -9.72 16 8 C 0.05 0.66 11.16 84.62 0.94 1.61 16 9 C -0.09 -1.20 9.61 22.62 0.22 -0.98 16 10 C -0.15 -3.23 5.92 -19.81 -0.12 -3.34 16 11 C 0.56 14.46 7.79 86.79 0.68 15.13 16 12 O -0.56 -19.10 15.31 16.38 0.25 -18.85 16 13 N -0.71 -15.02 5.51 -465.98 -2.57 -17.59 16 14 C 0.17 4.11 5.95 86.38 0.51 4.62 16 15 C -0.11 -3.08 5.34 -10.79 -0.06 -3.14 16 16 H 0.11 2.97 8.04 -2.39 -0.02 2.95 16 17 C -0.16 -5.07 7.03 -8.69 -0.06 -5.13 16 18 H 0.13 3.65 8.12 -2.39 -0.02 3.63 16 19 C 0.15 5.90 7.10 87.73 0.62 6.53 16 20 N -0.62 -31.65 3.38 -681.41 -2.30 -33.95 16 21 C -0.24 -13.40 10.35 84.03 0.87 -12.53 16 22 H 0.08 4.25 7.85 -2.91 -0.02 4.23 16 23 C -0.06 -3.60 5.39 84.86 0.46 -3.14 16 24 N -0.95 -56.73 10.93 21.65 0.24 -56.50 16 25 Si 0.98 45.38 29.57 68.60 2.03 47.41 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 29 C 0.19 9.21 5.69 86.53 0.49 9.70 16 30 C -0.18 -6.50 6.77 -9.88 -0.07 -6.57 16 31 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.68 6.89 -2.39 -0.02 0.67 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 0.93 6.36 -2.39 -0.02 0.92 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.18 2.15 5.44 -2.91 -0.02 2.13 16 40 H 0.20 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.18 1.26 6.53 -2.91 -0.02 1.24 16 42 H 0.41 6.21 6.54 -92.71 -0.61 5.61 16 43 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 44 H 0.07 1.77 7.94 -2.38 -0.02 1.75 16 45 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 47 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 48 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 49 H 0.05 2.73 6.57 -2.39 -0.02 2.72 16 Total: -1.00 -76.69 398.17 2.31 -74.38 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.36 Total: 17.33 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 6.88 Total: 4.96 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -6.65 Total: -117.76 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.31 Total: -26.32 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -76.69 2.31 -74.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978543875.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.435 kcal (2) G-P(sol) polarization free energy of solvation -76.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds