Wall clock time and date at job start Wed Apr 1 2020 04:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47041 * 2 1 4 4 O 1.42908 * 109.46897 * 120.00035 * 2 1 3 5 5 C 1.35923 * 116.99897 * 84.95749 * 4 2 1 6 6 C 1.38851 * 120.39954 * 174.50266 * 5 4 2 7 7 N 1.31878 * 121.00013 * 180.02562 * 6 5 4 8 8 C 1.31691 * 121.93967 * 359.70573 * 7 6 5 9 9 C 1.39526 * 120.68572 * 0.57952 * 8 7 6 10 10 C 1.47857 * 120.52704 * 179.70368 * 9 8 7 11 11 O 1.21559 * 119.99619 * 179.72930 * 10 9 8 12 12 N 1.34772 * 120.00254 * 359.72671 * 10 9 8 13 13 C 1.46501 * 120.00207 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47371 * 180.02562 * 13 12 10 15 15 H 1.08998 * 115.49567 * 29.61338 * 14 13 12 16 16 C 1.57119 * 118.27443 * 243.46473 * 14 13 12 17 17 H 1.09001 * 121.24296 * 3.76740 * 16 14 13 18 18 C 1.54384 * 118.20775 * 162.01274 * 16 14 13 19 19 N 1.48144 * 104.62000 * 86.19728 * 18 16 14 20 20 C 1.36939 * 127.84306 * 140.41473 * 19 18 16 21 21 H 1.08000 * 120.00445 * 195.06260 * 20 19 18 22 22 C 1.38810 * 119.99338 * 15.05960 * 20 19 18 23 23 N 1.31613 * 120.00435 * 8.73851 * 22 20 19 24 24 Si 1.86801 * 119.99699 * 188.73926 * 22 20 19 25 25 H 1.48499 * 109.47364 * 60.00089 * 24 22 20 26 26 H 1.48503 * 109.47042 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47156 * 299.99965 * 24 22 20 28 28 C 1.48154 * 104.32437 * 320.42012 * 19 18 16 29 29 C 1.53000 * 117.44554 * 175.00077 * 14 13 12 30 30 H 1.09002 * 119.53984 * 355.87949 * 29 14 13 31 31 C 1.38835 * 120.40592 * 354.51969 * 5 4 2 32 32 H 1.09003 * 109.47073 * 60.00064 * 1 2 3 33 33 H 1.09006 * 109.47443 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47120 * 300.00426 * 1 2 3 35 35 H 1.09000 * 109.47120 * 239.99574 * 2 1 3 36 36 H 1.09008 * 109.46870 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.47156 * 299.99342 * 3 2 1 38 38 H 1.09000 * 109.47511 * 59.99813 * 3 2 1 39 39 H 1.08006 * 119.50492 * 0.04440 * 6 5 4 40 40 H 1.07994 * 119.65970 * 180.28875 * 8 7 6 41 41 H 0.96999 * 119.99922 * 0.02562 * 12 10 9 42 42 H 1.08997 * 109.46746 * 59.99781 * 13 12 10 43 43 H 1.08999 * 109.46962 * 300.00219 * 13 12 10 44 44 H 1.09000 * 110.40709 * 327.41825 * 18 16 14 45 45 H 1.08999 * 110.51289 * 205.03662 * 18 16 14 46 46 H 0.97001 * 120.00327 * 179.97438 * 23 22 20 47 47 H 1.09001 * 110.40118 * 280.80166 * 28 19 18 48 48 H 1.08994 * 110.40601 * 158.36912 * 28 19 18 49 49 H 1.07997 * 120.88345 * 359.96100 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 2.1116 -2.0271 1.0982 6 6 2.6726 -2.7423 2.1478 7 7 2.7811 -4.0555 2.0935 8 6 2.3616 -4.7468 1.0541 9 6 1.7912 -4.1043 -0.0453 10 6 1.3274 -4.8833 -1.2132 11 8 0.8274 -4.3140 -2.1637 12 7 1.4591 -6.2246 -1.2239 13 6 0.9990 -6.9966 -2.3809 14 6 1.2625 -8.4841 -2.1390 15 1 1.2414 -8.8008 -1.0963 16 6 2.2648 -9.2273 -3.0938 17 1 2.8089 -8.6904 -3.8709 18 6 2.8569 -10.5738 -2.6250 19 7 1.8576 -11.5861 -3.0389 20 6 2.0892 -12.8324 -3.5570 21 1 1.2892 -13.3737 -4.0400 22 6 3.3524 -13.3998 -3.4613 23 7 4.2796 -12.8220 -2.7274 24 14 3.7364 -14.9835 -4.3745 25 1 3.5472 -14.7729 -5.8322 26 1 5.1430 -15.3791 -4.1094 27 1 2.8241 -16.0581 -3.9071 28 6 0.5506 -10.9442 -2.7655 29 6 0.7442 -9.4715 -3.1865 30 1 0.1532 -9.1041 -4.0255 31 6 1.6598 -2.7111 -0.0223 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8899 35 1 1.8933 -0.5139 -0.8899 36 1 3.1300 1.4424 -0.0005 37 1 1.6767 1.9563 -0.8901 38 1 1.6766 1.9564 0.8899 39 1 3.0253 -2.2153 3.0221 40 1 2.4645 -5.8219 1.0505 41 1 1.8578 -6.6789 -0.4653 42 1 1.5371 -6.6720 -3.2715 43 1 -0.0696 -6.8357 -2.5234 44 1 2.9771 -10.5795 -1.5416 45 1 3.8129 -10.7615 -3.1137 46 1 5.1623 -13.2188 -2.6603 47 1 0.3109 -11.0077 -1.7040 48 1 -0.2338 -11.4101 -3.3618 49 1 1.2186 -2.1822 -0.8541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978600961.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:33 Heat of formation + Delta-G solvation = 21.701531 kcal Electronic energy + Delta-G solvation = -28912.398507 eV Core-core repulsion = 24841.804255 eV Total energy + Delta-G solvation = -4070.594252 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.32961 -39.83548 -38.81337 -38.42491 -35.14801 -33.87032 -33.38395 -32.71204 -31.05775 -30.44194 -27.85120 -27.61159 -27.12434 -25.38260 -24.32359 -24.14090 -21.65292 -21.22486 -21.02671 -20.05478 -19.23530 -18.86814 -17.39724 -17.26246 -17.00141 -16.80083 -16.05425 -15.81965 -15.44916 -14.90803 -14.85340 -14.57016 -14.37347 -14.03988 -13.89939 -13.61407 -13.40039 -13.16411 -13.00137 -12.88343 -12.79986 -12.71962 -12.65592 -12.34261 -11.83993 -11.54215 -11.31036 -11.27726 -11.11871 -10.84185 -10.78963 -10.61350 -10.30228 -10.18584 -10.17285 -9.86066 -9.75537 -9.47587 -9.19590 -9.01129 -8.87270 -8.63825 -6.89453 -5.81480 -3.15986 0.24241 0.79301 2.54965 2.59373 2.86565 3.37493 3.42228 3.43345 3.46654 3.94060 4.03050 4.15457 4.25168 4.33448 4.41342 4.43462 4.50367 4.56172 4.57775 4.81482 4.99070 5.03381 5.17867 5.21972 5.23478 5.26033 5.32655 5.39679 5.47537 5.48083 5.52433 5.61470 5.65694 5.73293 5.80117 5.87374 5.88405 5.92141 6.22370 6.23272 6.51246 6.62177 6.67546 6.74910 6.89122 7.27131 7.33871 7.45536 7.51106 7.69760 7.93944 8.19168 9.09156 9.71855 10.48448 11.32486 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025382 B = 0.001698 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.881054 B =16487.201894 C =17045.081261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.073 3.927 3 C -0.148 4.148 4 O -0.302 6.302 5 C 0.076 3.924 6 C 0.096 3.904 7 N -0.446 5.446 8 C 0.095 3.905 9 C -0.143 4.143 10 C 0.560 3.440 11 O -0.537 6.537 12 N -0.713 5.713 13 C 0.156 3.844 14 C -0.156 4.156 15 H 0.105 0.895 16 C -0.167 4.167 17 H 0.104 0.896 18 C 0.181 3.819 19 N -0.595 5.595 20 C -0.228 4.228 21 H 0.076 0.924 22 C -0.005 4.005 23 N -0.916 5.916 24 Si 0.913 3.087 25 H -0.284 1.284 26 H -0.289 1.289 27 H -0.283 1.283 28 C 0.152 3.848 29 C -0.160 4.160 30 H 0.103 0.897 31 C -0.112 4.112 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.403 0.597 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.022 0.978 45 H 0.092 0.908 46 H 0.255 0.745 47 H 0.025 0.975 48 H 0.050 0.950 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.539 26.957 7.882 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.016 3.984 3 C -0.205 4.205 4 O -0.214 6.214 5 C 0.028 3.972 6 C -0.063 4.063 7 N -0.154 5.154 8 C -0.063 4.063 9 C -0.148 4.148 10 C 0.346 3.654 11 O -0.415 6.415 12 N -0.364 5.364 13 C 0.033 3.967 14 C -0.175 4.175 15 H 0.123 0.877 16 C -0.187 4.187 17 H 0.122 0.878 18 C 0.056 3.944 19 N -0.318 5.318 20 C -0.356 4.356 21 H 0.094 0.906 22 C -0.202 4.202 23 N -0.562 5.562 24 Si 0.743 3.257 25 H -0.211 1.211 26 H -0.215 1.215 27 H -0.210 1.210 28 C 0.026 3.974 29 C -0.181 4.181 30 H 0.121 0.879 31 C -0.139 4.139 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.186 0.814 40 H 0.181 0.819 41 H 0.239 0.761 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.040 0.960 45 H 0.110 0.890 46 H 0.065 0.935 47 H 0.042 0.958 48 H 0.069 0.931 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.294 26.798 7.989 28.461 hybrid contribution -0.086 -0.641 -1.063 1.245 sum -5.380 26.157 6.926 27.588 Atomic orbital electron populations 1.22400 0.94618 1.03380 1.03521 1.22572 0.94714 0.93979 0.87087 1.21855 1.02246 0.93053 1.03328 1.86162 1.81036 1.15060 1.39181 1.20056 0.97445 0.84246 0.95427 1.22462 0.97049 0.89304 0.97514 1.67769 1.15246 1.06896 1.25496 1.22939 0.94513 1.00581 0.88270 1.20877 1.03017 0.94244 0.96638 1.17985 0.78964 0.82211 0.86228 1.90780 1.44434 1.70282 1.36038 1.45945 1.62472 1.06167 1.21864 1.20880 0.99645 0.88504 0.87639 1.23128 1.06374 0.90766 0.97189 0.87748 1.25028 0.92532 1.00066 1.01053 0.87774 1.21107 0.94653 0.81908 0.96751 1.45206 0.99291 1.13643 1.73661 1.18960 0.96230 0.91074 1.29376 0.90599 1.24885 0.97093 0.98711 0.99556 1.69870 1.04271 1.40701 1.41399 0.86187 0.77217 0.82777 0.79497 1.21074 1.21522 1.20979 1.21175 0.90361 0.88740 0.97127 1.23836 0.98614 0.95947 0.99684 0.87933 1.21873 0.99728 0.93821 0.98467 0.90558 0.91781 0.91189 0.90591 0.91473 0.90226 0.91269 0.81415 0.81864 0.76069 0.91040 0.90919 0.95975 0.89013 0.93486 0.95760 0.93118 0.82871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 9.19 37.16 0.34 -0.72 16 2 C 0.07 0.46 2.85 -26.73 -0.08 0.39 16 3 C -0.15 -0.68 9.56 37.16 0.36 -0.32 16 4 O -0.30 -2.51 9.81 -19.50 -0.19 -2.70 16 5 C 0.08 0.70 6.61 -39.13 -0.26 0.44 16 6 C 0.10 0.86 11.13 -17.31 -0.19 0.67 16 7 N -0.45 -4.62 10.34 -12.79 -0.13 -4.75 16 8 C 0.10 0.93 10.71 -17.13 -0.18 0.74 16 9 C -0.14 -1.52 5.89 -104.84 -0.62 -2.14 16 10 C 0.56 6.99 7.78 -12.33 -0.10 6.89 16 11 O -0.54 -8.34 16.42 5.31 0.09 -8.25 16 12 N -0.71 -8.01 5.51 -61.25 -0.34 -8.35 16 13 C 0.16 1.98 5.98 -4.04 -0.02 1.96 16 14 C -0.16 -2.25 5.54 -88.39 -0.49 -2.74 16 15 H 0.10 1.49 8.04 -51.93 -0.42 1.07 16 16 C -0.17 -3.04 7.00 -86.99 -0.61 -3.64 16 17 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 18 C 0.18 4.24 5.75 -2.41 -0.01 4.23 16 19 N -0.59 -15.01 3.38 -168.86 -0.57 -15.58 16 20 C -0.23 -6.30 10.36 -15.06 -0.16 -6.46 16 21 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 22 C -0.01 -0.15 5.41 -17.43 -0.09 -0.24 16 23 N -0.92 -26.51 10.82 55.49 0.60 -25.91 16 24 Si 0.91 21.76 29.56 -169.99 -5.03 16.74 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 C 0.15 3.11 7.03 -2.41 -0.02 3.10 16 29 C -0.16 -2.73 6.71 -89.22 -0.60 -3.33 16 30 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 31 C -0.11 -1.12 7.87 -38.72 -0.30 -1.42 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.45 6.93 -51.93 -0.36 0.09 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.50 6.35 -51.93 -0.33 0.17 16 36 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.16 1.23 6.42 -52.49 -0.34 0.89 16 41 H 0.40 3.67 6.46 -40.82 -0.26 3.41 16 42 H 0.07 0.97 8.00 -51.93 -0.42 0.55 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 2.42 6.45 -51.93 -0.34 2.09 16 46 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.15 1.47 5.26 -52.49 -0.28 1.20 16 LS Contribution 400.21 15.07 6.03 6.03 Total: -1.00 -32.59 400.21 -9.93 -42.52 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.35 Total: 2.86 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -3.03 Total: -2.61 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.44 Total: -54.59 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -0.10 Total: -10.95 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.59 -9.93 -42.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978600961.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.218 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds