Wall clock time and date at job start Wed Apr 1 2020 04:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47041 * 2 1 4 4 O 1.42908 * 109.46897 * 120.00035 * 2 1 3 5 5 C 1.35923 * 116.99897 * 84.95749 * 4 2 1 6 6 C 1.38851 * 120.39954 * 174.50266 * 5 4 2 7 7 N 1.31878 * 121.00013 * 180.02562 * 6 5 4 8 8 C 1.31691 * 121.93967 * 359.70573 * 7 6 5 9 9 C 1.39526 * 120.68572 * 0.57952 * 8 7 6 10 10 C 1.47857 * 120.52704 * 179.70368 * 9 8 7 11 11 O 1.21559 * 119.99619 * 179.72930 * 10 9 8 12 12 N 1.34772 * 120.00254 * 359.72671 * 10 9 8 13 13 C 1.46501 * 120.00207 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47371 * 180.02562 * 13 12 10 15 15 H 1.08998 * 115.49567 * 29.61338 * 14 13 12 16 16 C 1.57119 * 118.27443 * 243.46473 * 14 13 12 17 17 H 1.09001 * 121.24296 * 3.76740 * 16 14 13 18 18 C 1.54384 * 118.20775 * 162.01274 * 16 14 13 19 19 N 1.48144 * 104.62000 * 86.19728 * 18 16 14 20 20 C 1.36939 * 127.84306 * 140.41473 * 19 18 16 21 21 H 1.08000 * 120.00445 * 195.06260 * 20 19 18 22 22 C 1.38810 * 119.99338 * 15.05960 * 20 19 18 23 23 N 1.31613 * 120.00435 * 8.73851 * 22 20 19 24 24 Si 1.86801 * 119.99699 * 188.73926 * 22 20 19 25 25 H 1.48499 * 109.47364 * 60.00089 * 24 22 20 26 26 H 1.48503 * 109.47042 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47156 * 299.99965 * 24 22 20 28 28 C 1.48154 * 104.32437 * 320.42012 * 19 18 16 29 29 C 1.53000 * 117.44554 * 175.00077 * 14 13 12 30 30 H 1.09002 * 119.53984 * 355.87949 * 29 14 13 31 31 C 1.38835 * 120.40592 * 354.51969 * 5 4 2 32 32 H 1.09003 * 109.47073 * 60.00064 * 1 2 3 33 33 H 1.09006 * 109.47443 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47120 * 300.00426 * 1 2 3 35 35 H 1.09000 * 109.47120 * 239.99574 * 2 1 3 36 36 H 1.09008 * 109.46870 * 180.02562 * 3 2 1 37 37 H 1.09003 * 109.47156 * 299.99342 * 3 2 1 38 38 H 1.09000 * 109.47511 * 59.99813 * 3 2 1 39 39 H 1.08006 * 119.50492 * 0.04440 * 6 5 4 40 40 H 1.07994 * 119.65970 * 180.28875 * 8 7 6 41 41 H 0.96999 * 119.99922 * 0.02562 * 12 10 9 42 42 H 1.08997 * 109.46746 * 59.99781 * 13 12 10 43 43 H 1.08999 * 109.46962 * 300.00219 * 13 12 10 44 44 H 1.09000 * 110.40709 * 327.41825 * 18 16 14 45 45 H 1.08999 * 110.51289 * 205.03662 * 18 16 14 46 46 H 0.97001 * 120.00327 * 179.97438 * 23 22 20 47 47 H 1.09001 * 110.40118 * 280.80166 * 28 19 18 48 48 H 1.08994 * 110.40601 * 158.36912 * 28 19 18 49 49 H 1.07997 * 120.88345 * 359.96100 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 2.1116 -2.0271 1.0982 6 6 2.6726 -2.7423 2.1478 7 7 2.7811 -4.0555 2.0935 8 6 2.3616 -4.7468 1.0541 9 6 1.7912 -4.1043 -0.0453 10 6 1.3274 -4.8833 -1.2132 11 8 0.8274 -4.3140 -2.1637 12 7 1.4591 -6.2246 -1.2239 13 6 0.9990 -6.9966 -2.3809 14 6 1.2625 -8.4841 -2.1390 15 1 1.2414 -8.8008 -1.0963 16 6 2.2648 -9.2273 -3.0938 17 1 2.8089 -8.6904 -3.8709 18 6 2.8569 -10.5738 -2.6250 19 7 1.8576 -11.5861 -3.0389 20 6 2.0892 -12.8324 -3.5570 21 1 1.2892 -13.3737 -4.0400 22 6 3.3524 -13.3998 -3.4613 23 7 4.2796 -12.8220 -2.7274 24 14 3.7364 -14.9835 -4.3745 25 1 3.5472 -14.7729 -5.8322 26 1 5.1430 -15.3791 -4.1094 27 1 2.8241 -16.0581 -3.9071 28 6 0.5506 -10.9442 -2.7655 29 6 0.7442 -9.4715 -3.1865 30 1 0.1532 -9.1041 -4.0255 31 6 1.6598 -2.7111 -0.0223 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8899 35 1 1.8933 -0.5139 -0.8899 36 1 3.1300 1.4424 -0.0005 37 1 1.6767 1.9563 -0.8901 38 1 1.6766 1.9564 0.8899 39 1 3.0253 -2.2153 3.0221 40 1 2.4645 -5.8219 1.0505 41 1 1.8578 -6.6789 -0.4653 42 1 1.5371 -6.6720 -3.2715 43 1 -0.0696 -6.8357 -2.5234 44 1 2.9771 -10.5795 -1.5416 45 1 3.8129 -10.7615 -3.1137 46 1 5.1623 -13.2188 -2.6603 47 1 0.3109 -11.0077 -1.7040 48 1 -0.2338 -11.4101 -3.3618 49 1 1.2186 -2.1822 -0.8541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978600961.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:32 Heat of formation + Delta-G solvation = 1.446906 kcal Electronic energy + Delta-G solvation = -28913.276814 eV Core-core repulsion = 24841.804255 eV Total energy + Delta-G solvation = -4071.472559 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.07206 -40.78195 -40.07808 -39.33623 -36.40935 -35.06171 -34.34722 -33.56067 -32.66569 -31.36316 -29.07586 -28.75458 -28.23602 -26.90910 -25.23309 -24.98778 -22.87092 -22.30313 -21.91915 -21.37667 -20.74369 -19.71386 -18.83103 -18.16830 -17.94942 -17.76738 -16.92698 -16.70234 -16.69302 -16.35427 -15.98924 -15.47314 -15.37537 -15.18504 -14.97955 -14.65845 -14.60575 -14.40495 -14.14858 -13.96218 -13.55152 -13.38983 -13.30641 -13.16934 -13.13109 -12.88661 -12.86600 -12.68544 -12.37155 -12.04267 -11.99639 -11.92305 -11.79567 -11.73413 -11.63888 -10.96981 -10.91039 -10.78739 -10.61142 -10.53167 -10.09642 -9.57410 -8.89997 -7.90886 -5.26995 -0.53614 0.06717 1.46445 1.49421 1.55932 1.69048 1.88211 1.99900 2.48412 2.64419 2.69907 3.22542 3.27203 3.47130 3.55554 3.67449 3.69606 3.73003 3.77584 3.84565 3.86344 3.93855 4.09531 4.19939 4.26718 4.32756 4.45858 4.56606 4.64760 4.67870 4.69697 4.71946 4.75811 4.81752 4.83782 4.86865 4.93982 5.03977 5.13784 5.18162 5.22964 5.25464 5.36404 5.39117 5.45872 5.55855 5.69163 6.12085 6.19401 6.36727 6.72936 7.01025 7.02234 7.69433 8.47320 9.22189 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025382 B = 0.001698 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.881054 B =16487.201894 C =17045.081261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.065 3.935 3 C -0.145 4.145 4 O -0.306 6.306 5 C 0.077 3.923 6 C 0.097 3.903 7 N -0.462 5.462 8 C 0.096 3.904 9 C -0.154 4.154 10 C 0.564 3.436 11 O -0.571 6.571 12 N -0.705 5.705 13 C 0.164 3.836 14 C -0.110 4.110 15 H 0.113 0.887 16 C -0.181 4.181 17 H 0.112 0.888 18 C 0.187 3.813 19 N -0.621 5.621 20 C -0.243 4.243 21 H 0.080 0.920 22 C -0.062 4.062 23 N -0.946 5.946 24 Si 0.979 3.021 25 H -0.278 1.278 26 H -0.294 1.294 27 H -0.275 1.275 28 C 0.146 3.854 29 C -0.153 4.153 30 H 0.125 0.875 31 C -0.116 4.116 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.190 0.810 40 H 0.183 0.817 41 H 0.415 0.585 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.003 0.997 45 H 0.053 0.947 46 H 0.250 0.750 47 H 0.028 0.972 48 H 0.056 0.944 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 28.431 8.106 30.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.010 3.990 3 C -0.202 4.202 4 O -0.219 6.219 5 C 0.029 3.971 6 C -0.062 4.062 7 N -0.171 5.171 8 C -0.061 4.061 9 C -0.159 4.159 10 C 0.351 3.649 11 O -0.452 6.452 12 N -0.357 5.357 13 C 0.041 3.959 14 C -0.129 4.129 15 H 0.131 0.869 16 C -0.201 4.201 17 H 0.130 0.870 18 C 0.061 3.939 19 N -0.346 5.346 20 C -0.371 4.371 21 H 0.098 0.902 22 C -0.256 4.256 23 N -0.594 5.594 24 Si 0.807 3.193 25 H -0.204 1.204 26 H -0.220 1.220 27 H -0.201 1.201 28 C 0.021 3.979 29 C -0.173 4.173 30 H 0.143 0.857 31 C -0.143 4.143 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.207 0.793 40 H 0.200 0.800 41 H 0.253 0.747 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.021 0.979 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.045 0.955 48 H 0.075 0.925 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.360 28.280 8.230 30.132 hybrid contribution 0.193 -1.025 -1.074 1.497 sum -6.166 27.255 7.157 28.846 Atomic orbital electron populations 1.22386 0.94200 1.02661 1.04403 1.22791 0.95129 0.94768 0.86342 1.21875 1.02151 0.91833 1.04299 1.86165 1.81034 1.14539 1.40156 1.20073 0.97219 0.84711 0.95126 1.22857 0.96130 0.89128 0.98055 1.67831 1.15909 1.07552 1.25786 1.23209 0.93737 1.01473 0.87715 1.20757 1.04302 0.94381 0.96463 1.18170 0.78240 0.82306 0.86180 1.90763 1.46119 1.70923 1.37364 1.45824 1.62137 1.05905 1.21837 1.20738 1.00251 0.86944 0.88007 1.23043 1.01744 0.91404 0.96742 0.86891 1.24708 0.93059 0.98969 1.03336 0.87042 1.20845 0.93366 0.84542 0.95135 1.45534 1.01596 1.13613 1.73833 1.19350 0.96481 0.92233 1.29071 0.90239 1.25712 0.97078 1.02058 1.00746 1.70070 1.04280 1.42100 1.42963 0.85154 0.76613 0.79181 0.78380 1.20402 1.21961 1.20059 1.21329 0.88517 0.90606 0.97421 1.23770 0.97509 0.94636 1.01393 0.85670 1.21952 0.99718 0.93792 0.98827 0.89127 0.93245 0.90871 0.90929 0.91631 0.88583 0.90968 0.79266 0.80034 0.74718 0.91366 0.89893 0.97902 0.92864 0.94132 0.95466 0.92529 0.82947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 9.19 71.98 0.66 -1.24 16 2 C 0.07 0.76 2.85 30.59 0.09 0.85 16 3 C -0.14 -1.09 9.56 71.98 0.69 -0.40 16 4 O -0.31 -4.73 9.81 -92.68 -0.91 -5.63 16 5 C 0.08 1.32 6.61 22.56 0.15 1.47 16 6 C 0.10 1.61 11.13 84.83 0.94 2.55 16 7 N -0.46 -8.88 10.34 -194.39 -2.01 -10.89 16 8 C 0.10 1.73 10.71 85.02 0.91 2.64 16 9 C -0.15 -3.11 5.89 -20.00 -0.12 -3.23 16 10 C 0.56 13.28 7.78 86.79 0.68 13.95 16 11 O -0.57 -17.15 16.42 -3.90 -0.06 -17.22 16 12 N -0.71 -14.31 5.51 -465.97 -2.57 -16.88 16 13 C 0.16 3.72 5.98 86.38 0.52 4.24 16 14 C -0.11 -2.93 5.54 -9.35 -0.05 -2.98 16 15 H 0.11 2.90 8.04 -2.39 -0.02 2.88 16 16 C -0.18 -6.44 7.00 -8.44 -0.06 -6.49 16 17 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 18 C 0.19 8.95 5.75 86.53 0.50 9.44 16 19 N -0.62 -31.75 3.38 -688.16 -2.33 -34.07 16 20 C -0.24 -13.57 10.36 84.03 0.87 -12.70 16 21 H 0.08 4.25 7.84 -2.91 -0.02 4.23 16 22 C -0.06 -3.52 5.41 84.86 0.46 -3.06 16 23 N -0.95 -56.51 10.82 21.65 0.23 -56.28 16 24 Si 0.98 45.34 29.56 68.60 2.03 47.36 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 27 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 28 C 0.15 5.85 7.03 86.53 0.61 6.46 16 29 C -0.15 -4.89 6.71 -9.89 -0.07 -4.96 16 30 H 0.13 3.50 8.14 -2.39 -0.02 3.48 16 31 C -0.12 -2.23 7.87 22.83 0.18 -2.05 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.67 6.93 -2.38 -0.02 0.65 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.90 6.35 -2.39 -0.02 0.88 16 36 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.18 2.37 6.42 -2.91 -0.02 2.35 16 41 H 0.41 6.54 6.46 -92.71 -0.60 5.94 16 42 H 0.07 1.68 8.00 -2.39 -0.02 1.66 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 44 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.05 2.94 6.45 -2.39 -0.02 2.92 16 46 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 47 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.15 2.89 5.26 -2.91 -0.02 2.87 16 Total: -1.00 -71.62 400.21 1.71 -69.91 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.37 Total: 19.18 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 6.95 Total: 4.51 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -6.67 Total: -118.11 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.97 Total: -22.85 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -71.62 1.71 -69.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978600961.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.359 kcal (2) G-P(sol) polarization free energy of solvation -71.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds