Wall clock time and date at job start Wed Apr 1 2020 04:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47388 * 2 1 4 4 O 1.42901 * 109.46871 * 120.00269 * 2 1 3 5 5 C 1.35687 * 117.00272 * 89.99982 * 4 2 1 6 6 C 1.38885 * 119.62407 * 180.02562 * 5 4 2 7 7 C 1.39571 * 118.94741 * 180.02562 * 6 5 4 8 8 C 1.48164 * 120.89377 * 179.97438 * 7 6 5 9 9 O 1.21516 * 120.00049 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00220 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00067 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46914 * 179.97438 * 11 10 8 13 13 H 1.09003 * 115.51737 * 29.58625 * 12 11 10 14 14 C 1.53002 * 117.44403 * 244.23681 * 12 11 10 15 15 H 1.09000 * 119.53456 * 4.12067 * 14 12 11 16 16 C 1.57690 * 116.10943 * 161.63832 * 14 12 11 17 17 N 1.48151 * 104.67430 * 87.31419 * 16 14 12 18 18 C 1.36933 * 127.84172 * 139.76912 * 17 16 14 19 19 H 1.07997 * 120.00267 * 344.34227 * 18 17 16 20 20 C 1.38814 * 120.00135 * 164.33319 * 18 17 16 21 21 N 1.31624 * 119.99667 * 350.57513 * 20 18 17 22 22 Si 1.86801 * 120.00019 * 170.57030 * 20 18 17 23 23 H 1.48496 * 109.47180 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46870 * 120.00573 * 22 20 18 25 25 H 1.48502 * 109.47098 * 240.00200 * 22 20 18 26 26 C 1.48153 * 104.32094 * 319.76971 * 17 16 14 27 27 C 1.52999 * 117.43978 * 174.99705 * 12 11 10 28 28 H 1.08997 * 119.54348 * 355.88870 * 27 12 11 29 29 C 1.39962 * 118.21931 * 359.97438 * 7 6 5 30 30 C 1.37983 * 119.13310 * 359.97438 * 29 7 6 31 31 N 1.31919 * 120.97206 * 0.02562 * 30 29 7 32 32 H 1.09000 * 109.47386 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47359 * 300.00244 * 1 2 3 34 34 H 1.09004 * 109.47171 * 60.00000 * 1 2 3 35 35 H 1.09002 * 109.46886 * 239.99614 * 2 1 3 36 36 H 1.08992 * 109.47168 * 179.97438 * 3 2 1 37 37 H 1.08997 * 109.47220 * 300.00372 * 3 2 1 38 38 H 1.09002 * 109.46682 * 59.99879 * 3 2 1 39 39 H 1.08006 * 120.52653 * 359.97438 * 6 5 4 40 40 H 0.97003 * 119.99970 * 0.02562 * 10 8 7 41 41 H 1.08995 * 109.46697 * 300.00067 * 11 10 8 42 42 H 1.09000 * 109.47200 * 59.99957 * 11 10 8 43 43 H 1.08994 * 110.92647 * 328.23501 * 16 14 12 44 44 H 1.08999 * 109.93555 * 205.88628 * 16 14 12 45 45 H 0.97002 * 119.99555 * 179.97438 * 21 20 18 46 46 H 1.08998 * 110.40895 * 280.80007 * 26 17 16 47 47 H 1.08997 * 110.40353 * 158.36784 * 26 17 16 48 48 H 1.07997 * 120.43789 * 180.02562 * 29 7 6 49 49 H 1.07995 * 119.51781 * 180.29861 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2116 -2.0111 1.0653 6 6 2.6735 -2.7203 2.1664 7 6 2.8803 -4.0953 2.0461 8 6 3.3726 -4.8938 3.1930 9 8 3.6024 -4.3523 4.2563 10 7 3.5655 -6.2207 3.0570 11 6 4.0517 -7.0103 4.1912 12 6 4.1824 -8.4763 3.7733 13 1 4.4052 -8.6462 2.7199 14 6 3.2795 -9.4928 4.4751 15 1 2.5338 -9.1455 5.1902 16 6 3.0990 -10.8798 3.7470 17 7 4.2287 -11.7073 4.2305 18 6 4.2133 -13.0337 4.5705 19 1 3.2731 -13.5358 4.7441 20 6 5.4063 -13.7331 4.6918 21 7 6.5357 -13.1801 4.3030 22 14 5.4087 -15.4588 5.4069 23 1 4.0210 -15.8486 5.7640 24 1 5.9466 -16.4103 4.4017 25 1 6.2605 -15.4895 6.6229 26 6 5.3790 -10.7742 4.2629 27 6 4.7896 -9.4473 4.7880 28 1 5.1687 -9.0662 5.7362 29 6 2.6102 -4.6998 0.8130 30 6 2.1526 -3.9218 -0.2306 31 7 1.9687 -2.6242 -0.0802 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 3.1300 1.4424 0.0005 37 1 1.6767 1.9563 -0.8899 38 1 1.6767 1.9563 0.8900 39 1 2.8703 -2.2156 3.1008 40 1 3.3824 -6.6530 2.2081 41 1 5.0250 -6.6335 4.5055 42 1 3.3467 -6.9302 5.0186 43 1 3.1509 -10.7610 2.6648 44 1 2.1485 -11.3294 4.0341 45 1 7.3693 -13.6687 4.3881 46 1 5.7870 -10.6388 3.2612 47 1 6.1485 -11.1429 4.9410 48 1 2.7573 -5.7615 0.6802 49 1 1.9376 -4.3826 -1.1834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978949329.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:03 Heat of formation + Delta-G solvation = 21.879338 kcal Electronic energy + Delta-G solvation = -28627.624295 eV Core-core repulsion = 24557.037753 eV Total energy + Delta-G solvation = -4070.586542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.24004 -39.88090 -38.77619 -38.26091 -35.15926 -33.76213 -33.50275 -32.89509 -30.91711 -30.47138 -27.75817 -27.64468 -27.02167 -25.51025 -24.39157 -23.71068 -22.14767 -21.18342 -20.78765 -20.05207 -19.33984 -18.86370 -17.57339 -16.92201 -16.81847 -16.13866 -16.07779 -15.85617 -15.43494 -14.95383 -14.81508 -14.63574 -14.28432 -14.24909 -14.01009 -13.63364 -13.54250 -13.15925 -12.84912 -12.77081 -12.74181 -12.69843 -12.37398 -12.32692 -11.92080 -11.38918 -11.28905 -11.22628 -11.12816 -10.87255 -10.68000 -10.52700 -10.31363 -10.29927 -10.12574 -9.96794 -9.77644 -9.51434 -9.20952 -9.05196 -8.92751 -8.67385 -6.90857 -5.83811 -3.18057 0.33616 0.74452 2.46148 2.62150 2.96029 3.35431 3.41775 3.44112 3.46815 3.84111 4.08362 4.25314 4.42359 4.43069 4.53744 4.54342 4.60060 4.65497 4.81922 4.84851 5.11281 5.23610 5.23958 5.30341 5.31379 5.35047 5.37298 5.39687 5.42577 5.45279 5.64928 5.66941 5.73548 5.74029 5.75159 5.83700 5.89521 5.94354 6.19030 6.21596 6.49158 6.61144 6.64404 6.85923 6.86608 7.25173 7.31751 7.38905 7.49418 7.68560 7.92250 8.16890 9.07252 9.70134 10.46811 11.30640 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.035826 B = 0.001542 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.362233 B =18154.360355 C =18450.396688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.081 3.919 3 C -0.152 4.152 4 O -0.299 6.299 5 C 0.323 3.677 6 C -0.135 4.135 7 C -0.049 4.049 8 C 0.556 3.444 9 O -0.529 6.529 10 N -0.712 5.712 11 C 0.153 3.847 12 C -0.155 4.155 13 H 0.104 0.896 14 C -0.171 4.171 15 H 0.108 0.892 16 C 0.156 3.844 17 N -0.594 5.594 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.915 5.915 22 Si 0.912 3.088 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.184 3.816 27 C -0.161 4.161 28 H 0.102 0.898 29 C -0.183 4.183 30 C 0.140 3.860 31 N -0.528 5.528 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.154 0.846 40 H 0.403 0.597 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.027 0.973 44 H 0.048 0.952 45 H 0.254 0.746 46 H 0.024 0.976 47 H 0.089 0.911 48 H 0.144 0.856 49 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.778 25.450 -10.834 29.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.025 3.975 3 C -0.209 4.209 4 O -0.207 6.207 5 C 0.144 3.856 6 C -0.156 4.156 7 C -0.060 4.060 8 C 0.341 3.659 9 O -0.405 6.405 10 N -0.363 5.363 11 C 0.031 3.969 12 C -0.174 4.174 13 H 0.122 0.878 14 C -0.191 4.191 15 H 0.125 0.875 16 C 0.029 3.971 17 N -0.318 5.318 18 C -0.356 4.356 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.561 5.561 22 Si 0.742 3.258 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.058 3.942 27 C -0.182 4.182 28 H 0.120 0.880 29 C -0.203 4.203 30 C -0.016 4.016 31 N -0.252 5.252 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.172 0.828 40 H 0.239 0.761 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.044 0.956 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.042 0.958 47 H 0.108 0.892 48 H 0.162 0.838 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.717 26.239 -10.465 29.874 hybrid contribution 0.198 -1.577 0.425 1.645 sum -9.519 24.663 -10.039 28.278 Atomic orbital electron populations 1.22224 0.94774 1.02949 1.02696 1.22382 0.94467 0.92841 0.87821 1.21916 1.02093 0.93784 1.03080 1.86326 1.79990 1.15563 1.38784 1.19631 0.91706 0.84951 0.89360 1.21131 1.02182 0.92782 0.99540 1.20149 0.98098 0.93485 0.94232 1.18064 0.78318 0.82187 0.87316 1.90801 1.50807 1.71067 1.27865 1.45933 1.66822 1.07342 1.16229 1.20968 0.99749 0.88491 0.87721 1.22547 1.06459 0.89480 0.98934 0.87849 1.24730 0.94291 0.96971 1.03151 0.87457 1.21714 0.92596 0.88060 0.94717 1.45158 1.04782 1.06169 1.75647 1.19039 0.93152 0.83520 1.39873 0.90513 1.24897 0.95797 0.98331 1.01202 1.69910 0.97843 1.37506 1.50859 0.86047 0.77515 0.83728 0.78467 1.20337 1.21677 1.21575 1.21083 0.91178 0.83418 0.98532 1.24191 0.96861 0.98285 0.98821 0.87954 1.22198 1.03050 1.01934 0.93162 1.22395 0.92904 0.87404 0.98863 1.67146 1.20614 1.12956 1.24521 0.91963 0.91905 0.91016 0.89171 0.91736 0.90404 0.91541 0.82835 0.76121 0.90753 0.91074 0.95554 0.93308 0.93577 0.95813 0.89235 0.83837 0.81571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 9.53 37.16 0.35 -0.75 16 2 C 0.08 0.61 3.11 -26.73 -0.08 0.52 16 3 C -0.15 -0.84 9.56 37.16 0.36 -0.48 16 4 O -0.30 -3.00 9.76 -18.76 -0.18 -3.18 16 5 C 0.32 3.37 7.45 -17.17 -0.13 3.24 16 6 C -0.13 -1.46 9.61 -38.84 -0.37 -1.84 16 7 C -0.05 -0.51 5.91 -104.68 -0.62 -1.12 16 8 C 0.56 6.90 7.80 -12.18 -0.10 6.81 16 9 O -0.53 -8.44 16.44 5.35 0.09 -8.35 16 10 N -0.71 -7.75 5.51 -61.15 -0.34 -8.09 16 11 C 0.15 1.95 5.95 -4.04 -0.02 1.93 16 12 C -0.16 -2.23 5.34 -90.62 -0.48 -2.71 16 13 H 0.10 1.45 8.04 -51.93 -0.42 1.04 16 14 C -0.17 -2.86 7.03 -87.38 -0.61 -3.48 16 15 H 0.11 1.66 8.12 -51.93 -0.42 1.23 16 16 C 0.16 3.12 7.10 -0.57 0.00 3.12 16 17 N -0.59 -14.86 3.38 -166.73 -0.56 -15.42 16 18 C -0.23 -6.24 10.35 -15.06 -0.16 -6.40 16 19 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 20 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 21 N -0.91 -26.39 10.88 55.49 0.60 -25.79 16 22 Si 0.91 21.65 29.56 -169.99 -5.03 16.62 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.18 4.27 5.70 -2.40 -0.01 4.26 16 27 C -0.16 -2.92 6.77 -89.21 -0.60 -3.52 16 28 H 0.10 1.77 8.14 -51.93 -0.42 1.34 16 29 C -0.18 -1.40 9.61 -39.03 -0.38 -1.78 16 30 C 0.14 1.04 11.17 -17.61 -0.20 0.84 16 31 N -0.53 -4.98 8.61 -13.38 -0.12 -5.09 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.71 6.98 -51.93 -0.36 0.34 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.15 1.71 7.74 -52.48 -0.41 1.30 16 40 H 0.40 3.37 6.54 -40.82 -0.27 3.10 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.09 2.35 6.53 -51.93 -0.34 2.01 16 48 H 0.14 0.73 6.53 -52.49 -0.34 0.39 16 49 H 0.17 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 405.05 15.07 6.10 6.10 Total: -1.00 -32.63 405.05 -10.17 -42.80 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.59 Total: 2.00 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -3.15 Total: -1.60 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.41 Total: -54.39 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.10 Total: -11.54 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.63 -10.17 -42.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978949329.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.680 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds