Wall clock time and date at job start Wed Apr 1 2020 04:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47388 * 2 1 4 4 O 1.42901 * 109.46871 * 120.00269 * 2 1 3 5 5 C 1.35687 * 117.00272 * 89.99982 * 4 2 1 6 6 C 1.38885 * 119.62407 * 180.02562 * 5 4 2 7 7 C 1.39571 * 118.94741 * 180.02562 * 6 5 4 8 8 C 1.48164 * 120.89377 * 179.97438 * 7 6 5 9 9 O 1.21516 * 120.00049 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00220 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00067 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46914 * 179.97438 * 11 10 8 13 13 H 1.09003 * 115.51737 * 29.58625 * 12 11 10 14 14 C 1.53002 * 117.44403 * 244.23681 * 12 11 10 15 15 H 1.09000 * 119.53456 * 4.12067 * 14 12 11 16 16 C 1.57690 * 116.10943 * 161.63832 * 14 12 11 17 17 N 1.48151 * 104.67430 * 87.31419 * 16 14 12 18 18 C 1.36933 * 127.84172 * 139.76912 * 17 16 14 19 19 H 1.07997 * 120.00267 * 344.34227 * 18 17 16 20 20 C 1.38814 * 120.00135 * 164.33319 * 18 17 16 21 21 N 1.31624 * 119.99667 * 350.57513 * 20 18 17 22 22 Si 1.86801 * 120.00019 * 170.57030 * 20 18 17 23 23 H 1.48496 * 109.47180 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46870 * 120.00573 * 22 20 18 25 25 H 1.48502 * 109.47098 * 240.00200 * 22 20 18 26 26 C 1.48153 * 104.32094 * 319.76971 * 17 16 14 27 27 C 1.52999 * 117.43978 * 174.99705 * 12 11 10 28 28 H 1.08997 * 119.54348 * 355.88870 * 27 12 11 29 29 C 1.39962 * 118.21931 * 359.97438 * 7 6 5 30 30 C 1.37983 * 119.13310 * 359.97438 * 29 7 6 31 31 N 1.31919 * 120.97206 * 0.02562 * 30 29 7 32 32 H 1.09000 * 109.47386 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47359 * 300.00244 * 1 2 3 34 34 H 1.09004 * 109.47171 * 60.00000 * 1 2 3 35 35 H 1.09002 * 109.46886 * 239.99614 * 2 1 3 36 36 H 1.08992 * 109.47168 * 179.97438 * 3 2 1 37 37 H 1.08997 * 109.47220 * 300.00372 * 3 2 1 38 38 H 1.09002 * 109.46682 * 59.99879 * 3 2 1 39 39 H 1.08006 * 120.52653 * 359.97438 * 6 5 4 40 40 H 0.97003 * 119.99970 * 0.02562 * 10 8 7 41 41 H 1.08995 * 109.46697 * 300.00067 * 11 10 8 42 42 H 1.09000 * 109.47200 * 59.99957 * 11 10 8 43 43 H 1.08994 * 110.92647 * 328.23501 * 16 14 12 44 44 H 1.08999 * 109.93555 * 205.88628 * 16 14 12 45 45 H 0.97002 * 119.99555 * 179.97438 * 21 20 18 46 46 H 1.08998 * 110.40895 * 280.80007 * 26 17 16 47 47 H 1.08997 * 110.40353 * 158.36784 * 26 17 16 48 48 H 1.07997 * 120.43789 * 180.02562 * 29 7 6 49 49 H 1.07995 * 119.51781 * 180.29861 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2116 -2.0111 1.0653 6 6 2.6735 -2.7203 2.1664 7 6 2.8803 -4.0953 2.0461 8 6 3.3726 -4.8938 3.1930 9 8 3.6024 -4.3523 4.2563 10 7 3.5655 -6.2207 3.0570 11 6 4.0517 -7.0103 4.1912 12 6 4.1824 -8.4763 3.7733 13 1 4.4052 -8.6462 2.7199 14 6 3.2795 -9.4928 4.4751 15 1 2.5338 -9.1455 5.1902 16 6 3.0990 -10.8798 3.7470 17 7 4.2287 -11.7073 4.2305 18 6 4.2133 -13.0337 4.5705 19 1 3.2731 -13.5358 4.7441 20 6 5.4063 -13.7331 4.6918 21 7 6.5357 -13.1801 4.3030 22 14 5.4087 -15.4588 5.4069 23 1 4.0210 -15.8486 5.7640 24 1 5.9466 -16.4103 4.4017 25 1 6.2605 -15.4895 6.6229 26 6 5.3790 -10.7742 4.2629 27 6 4.7896 -9.4473 4.7880 28 1 5.1687 -9.0662 5.7362 29 6 2.6102 -4.6998 0.8130 30 6 2.1526 -3.9218 -0.2306 31 7 1.9687 -2.6242 -0.0802 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 3.1300 1.4424 0.0005 37 1 1.6767 1.9563 -0.8899 38 1 1.6767 1.9563 0.8900 39 1 2.8703 -2.2156 3.1008 40 1 3.3824 -6.6530 2.2081 41 1 5.0250 -6.6335 4.5055 42 1 3.3467 -6.9302 5.0186 43 1 3.1509 -10.7610 2.6648 44 1 2.1485 -11.3294 4.0341 45 1 7.3693 -13.6687 4.3881 46 1 5.7870 -10.6388 3.2612 47 1 6.1485 -11.1429 4.9410 48 1 2.7573 -5.7615 0.6802 49 1 1.9376 -4.3826 -1.1834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978949329.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:02 Heat of formation + Delta-G solvation = 0.676637 kcal Electronic energy + Delta-G solvation = -28628.543713 eV Core-core repulsion = 24557.037753 eV Total energy + Delta-G solvation = -4071.505960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.97269 -40.86052 -40.12689 -39.03293 -36.44219 -35.11864 -34.25815 -33.78398 -32.64957 -31.19541 -29.09735 -28.66107 -28.16488 -27.01218 -25.43687 -24.39890 -23.05435 -22.60365 -21.87215 -21.14684 -20.83767 -19.74051 -18.80196 -18.30067 -17.72093 -16.92280 -16.86556 -16.83303 -16.59023 -16.39834 -15.94164 -15.49972 -15.34721 -15.22678 -14.90099 -14.86129 -14.59944 -14.46530 -14.30204 -14.01942 -13.36039 -13.28737 -13.19154 -13.18425 -13.00477 -12.88031 -12.85641 -12.73518 -12.28113 -11.94282 -11.94147 -11.86870 -11.80306 -11.75184 -11.49942 -11.08021 -10.95574 -10.72731 -10.69836 -10.54094 -10.12664 -9.58970 -8.89422 -7.91794 -5.27290 -0.42912 0.08184 1.46668 1.47663 1.58239 1.70464 1.73970 2.13553 2.47919 2.73383 2.76772 3.22657 3.26790 3.45464 3.61687 3.72199 3.85703 3.87862 3.89097 3.99332 4.03069 4.03744 4.19456 4.27859 4.28084 4.34085 4.57845 4.61113 4.64465 4.69355 4.69696 4.75743 4.83487 4.85132 4.89162 4.94480 4.97257 5.04408 5.14530 5.20239 5.26026 5.33791 5.36401 5.40726 5.46628 5.54929 5.68273 6.19062 6.21921 6.38120 6.72403 7.01677 7.02168 7.69573 8.47580 9.22199 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.035826 B = 0.001542 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.362233 B =18154.360355 C =18450.396688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.074 3.926 3 C -0.148 4.148 4 O -0.316 6.316 5 C 0.312 3.688 6 C -0.154 4.154 7 C -0.059 4.059 8 C 0.558 3.442 9 O -0.571 6.571 10 N -0.698 5.698 11 C 0.161 3.839 12 C -0.112 4.112 13 H 0.114 0.886 14 C -0.158 4.158 15 H 0.129 0.871 16 C 0.149 3.851 17 N -0.621 5.621 18 C -0.239 4.239 19 H 0.080 0.920 20 C -0.062 4.062 21 N -0.947 5.947 22 Si 0.977 3.023 23 H -0.265 1.265 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.189 3.811 27 C -0.179 4.179 28 H 0.110 0.890 29 C -0.169 4.169 30 C 0.143 3.857 31 N -0.533 5.533 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.139 0.861 40 H 0.418 0.582 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.035 0.965 44 H 0.054 0.946 45 H 0.249 0.751 46 H 0.005 0.995 47 H 0.050 0.950 48 H 0.176 0.824 49 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.490 26.047 -12.423 31.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 C -0.205 4.205 4 O -0.224 6.224 5 C 0.133 3.867 6 C -0.176 4.176 7 C -0.070 4.070 8 C 0.345 3.655 9 O -0.450 6.450 10 N -0.351 5.351 11 C 0.038 3.962 12 C -0.131 4.131 13 H 0.132 0.868 14 C -0.177 4.177 15 H 0.147 0.853 16 C 0.024 3.976 17 N -0.345 5.345 18 C -0.368 4.368 19 H 0.098 0.902 20 C -0.256 4.256 21 N -0.595 5.595 22 Si 0.805 3.195 23 H -0.189 1.189 24 H -0.218 1.218 25 H -0.219 1.219 26 C 0.064 3.936 27 C -0.199 4.199 28 H 0.128 0.872 29 C -0.189 4.189 30 C -0.013 4.013 31 N -0.258 5.258 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.157 0.843 40 H 0.257 0.743 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.053 0.947 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.023 0.977 47 H 0.068 0.932 48 H 0.193 0.807 49 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -11.469 26.853 -12.084 31.602 hybrid contribution 0.689 -1.742 0.826 2.047 sum -10.780 25.111 -11.258 29.556 Atomic orbital electron populations 1.22194 0.94074 1.02296 1.03583 1.22608 0.95086 0.93513 0.86911 1.21934 1.01805 0.92707 1.04078 1.86308 1.80220 1.15681 1.40163 1.19665 0.92216 0.85214 0.89570 1.21089 1.03625 0.93433 0.99430 1.20028 0.99240 0.93072 0.94651 1.18327 0.77533 0.82390 0.87264 1.90783 1.52725 1.71892 1.29637 1.45733 1.66103 1.06811 1.16422 1.20769 0.99884 0.87259 0.88286 1.22425 1.02580 0.89572 0.98501 0.86765 1.24657 0.93591 0.96127 1.03356 0.85344 1.21886 0.91234 0.89125 0.95360 1.45472 1.06672 1.06157 1.76244 1.19408 0.93327 0.84980 1.39101 0.90192 1.25705 0.95561 1.02117 1.02172 1.70097 0.98154 1.38826 1.52388 0.85036 0.77878 0.79299 0.77251 1.18891 1.21811 1.21922 1.20809 0.90422 0.85744 0.96656 1.23869 0.97753 0.97732 1.00594 0.87183 1.22527 1.01287 1.03402 0.91721 1.23090 0.91327 0.86659 1.00183 1.67234 1.20553 1.14054 1.23931 0.93317 0.92121 0.88997 0.89516 0.92202 0.88233 0.91672 0.84330 0.74316 0.90993 0.91015 0.94742 0.92770 0.94166 0.97738 0.93197 0.80716 0.77833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.53 71.98 0.69 -1.29 16 2 C 0.07 1.06 3.11 30.59 0.10 1.16 16 3 C -0.15 -1.49 9.56 71.98 0.69 -0.80 16 4 O -0.32 -6.39 9.76 -90.06 -0.88 -7.27 16 5 C 0.31 6.40 7.45 84.80 0.63 7.04 16 6 C -0.15 -3.37 9.61 22.75 0.22 -3.16 16 7 C -0.06 -1.14 5.91 -19.90 -0.12 -1.26 16 8 C 0.56 13.07 7.80 86.88 0.68 13.74 16 9 O -0.57 -18.11 16.44 -3.76 -0.06 -18.17 16 10 N -0.70 -13.21 5.51 -465.67 -2.57 -15.78 16 11 C 0.16 3.68 5.95 86.38 0.51 4.20 16 12 C -0.11 -2.90 5.34 -10.79 -0.06 -2.96 16 13 H 0.11 2.81 8.04 -2.39 -0.02 2.80 16 14 C -0.16 -4.87 7.03 -8.70 -0.06 -4.93 16 15 H 0.13 3.50 8.12 -2.39 -0.02 3.48 16 16 C 0.15 5.75 7.10 87.72 0.62 6.37 16 17 N -0.62 -31.21 3.38 -681.40 -2.30 -33.52 16 18 C -0.24 -13.22 10.35 84.03 0.87 -12.35 16 19 H 0.08 4.23 7.85 -2.91 -0.02 4.21 16 20 C -0.06 -3.47 5.40 84.86 0.46 -3.01 16 21 N -0.95 -56.27 10.88 21.65 0.24 -56.04 16 22 Si 0.98 45.03 29.56 68.60 2.03 47.06 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 C 0.19 8.99 5.70 86.54 0.49 9.48 16 27 C -0.18 -6.31 6.77 -9.88 -0.07 -6.38 16 28 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 29 C -0.17 -2.04 9.61 22.63 0.22 -1.83 16 30 C 0.14 1.66 11.17 84.62 0.94 2.60 16 31 N -0.53 -9.15 8.61 -309.14 -2.66 -11.81 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.09 1.27 6.98 -2.39 -0.02 1.26 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.14 3.33 7.74 -2.91 -0.02 3.31 16 40 H 0.42 5.29 6.54 -92.71 -0.61 4.69 16 41 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 1.71 7.94 -2.39 -0.02 1.69 16 43 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 46 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 47 H 0.05 2.74 6.53 -2.39 -0.02 2.72 16 48 H 0.18 0.93 6.53 -2.91 -0.02 0.91 16 49 H 0.21 0.76 8.06 -2.91 -0.02 0.74 16 Total: -1.00 -73.85 405.05 0.96 -72.89 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.35 Total: 16.00 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 6.81 Total: 6.63 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -7.30 Total: -117.15 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.94 Total: -25.44 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -73.85 0.96 -72.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978949329.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.571 kcal (2) G-P(sol) polarization free energy of solvation -73.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds