Wall clock time and date at job start Wed Apr 1 2020 04:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47173 * 2 1 4 4 O 1.42902 * 109.47070 * 120.00472 * 2 1 3 5 5 C 1.35424 * 117.00345 * 89.99966 * 4 2 1 6 6 N 1.32239 * 119.79751 * 0.02562 * 5 4 2 7 7 C 1.31883 * 121.79812 * 179.97438 * 6 5 4 8 8 C 1.38358 * 121.18529 * 359.97438 * 7 6 5 9 9 C 1.38337 * 119.45892 * 359.74759 * 8 7 6 10 10 C 1.39987 * 118.34899 * 0.49752 * 9 8 7 11 11 C 1.47524 * 120.59683 * 179.78415 * 10 9 8 12 12 O 1.21593 * 119.99984 * 179.71635 * 11 10 9 13 13 N 1.34773 * 120.00149 * 359.71420 * 11 10 9 14 14 C 1.46500 * 120.00246 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47358 * 180.02562 * 14 13 11 16 16 H 1.09009 * 115.51237 * 330.41828 * 15 14 13 17 17 C 1.52992 * 117.44290 * 185.00371 * 15 14 13 18 18 H 1.08997 * 119.54368 * 4.11349 * 17 15 14 19 19 C 1.54391 * 118.12217 * 160.80699 * 17 15 14 20 20 N 1.48151 * 104.61720 * 87.18996 * 19 17 15 21 21 C 1.36933 * 127.83672 * 140.39700 * 20 19 17 22 22 H 1.08004 * 119.99662 * 195.57561 * 21 20 19 23 23 C 1.38806 * 120.00523 * 15.56602 * 21 20 19 24 24 N 1.31628 * 119.99870 * 9.01311 * 23 21 20 25 25 Si 1.86796 * 120.00416 * 189.00959 * 23 21 20 26 26 H 1.48504 * 109.47290 * 94.44791 * 25 23 21 27 27 H 1.48505 * 109.47396 * 214.44868 * 25 23 21 28 28 H 1.48499 * 109.47146 * 334.44791 * 25 23 21 29 29 C 1.48148 * 104.32290 * 320.41263 * 20 19 17 30 30 C 1.52996 * 117.44573 * 115.76058 * 15 14 13 31 31 H 1.08999 * 119.53359 * 355.87984 * 30 15 14 32 32 H 1.08999 * 109.47286 * 299.99804 * 1 2 3 33 33 H 1.08996 * 109.47114 * 59.99775 * 1 2 3 34 34 H 1.09007 * 109.47192 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.47286 * 240.00196 * 2 1 3 36 36 H 1.09004 * 109.47068 * 179.97438 * 3 2 1 37 37 H 1.08996 * 109.47284 * 300.00121 * 3 2 1 38 38 H 1.09006 * 109.46703 * 60.00266 * 3 2 1 39 39 H 1.07994 * 119.40505 * 179.97438 * 7 6 5 40 40 H 1.08003 * 120.26665 * 180.02562 * 8 7 6 41 41 H 1.08000 * 120.82397 * 180.25329 * 9 8 7 42 42 H 0.97003 * 119.99967 * 0.02562 * 13 11 10 43 43 H 1.08999 * 109.46898 * 60.00081 * 14 13 11 44 44 H 1.08997 * 109.46873 * 300.00373 * 14 13 11 45 45 H 1.08998 * 110.40887 * 205.97202 * 19 17 15 46 46 H 1.09002 * 110.40846 * 328.40741 * 19 17 15 47 47 H 0.96998 * 120.00250 * 179.97438 * 24 23 21 48 48 H 1.08997 * 110.40858 * 280.80462 * 29 20 19 49 49 H 1.08998 * 110.50694 * 158.42134 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2112 -2.0085 1.0654 6 7 1.9704 -2.6253 -0.0793 7 6 2.1567 -3.9231 -0.2220 8 6 2.6157 -4.7006 0.8264 9 6 2.8894 -4.1062 2.0452 10 6 2.6791 -2.7283 2.1749 11 6 2.9502 -2.0444 3.4536 12 8 2.7687 -0.8462 3.5527 13 7 3.3991 -2.7477 4.5120 14 6 3.6678 -2.0687 5.7821 15 6 4.1640 -3.0875 6.8101 16 1 3.7902 -4.1035 6.6825 17 6 4.3891 -2.5934 8.2404 18 1 4.1304 -1.5672 8.5015 19 6 4.4444 -3.6419 9.3723 20 7 5.8626 -4.0678 9.4185 21 6 6.6246 -4.3324 10.5250 22 1 7.6997 -4.3890 10.4393 23 6 6.0153 -4.5277 11.7568 24 7 4.7057 -4.6356 11.8336 25 14 7.0538 -4.6377 13.3056 26 1 7.1353 -3.2989 13.9431 27 1 6.4321 -5.5992 14.2513 28 1 8.4196 -5.1023 12.9538 29 6 6.2694 -4.1421 7.9959 30 6 5.5924 -2.9232 7.3330 31 1 6.2301 -2.1427 6.9179 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6766 1.9563 0.8901 39 1 1.9471 -4.3873 -1.1743 40 1 2.7634 -5.7621 0.6929 41 1 3.2525 -4.6913 2.8771 42 1 3.5443 -3.7036 4.4329 43 1 2.7523 -1.6019 6.1453 44 1 4.4302 -1.3045 5.6312 45 1 4.1514 -3.1927 10.3212 46 1 3.8005 -4.4894 9.1371 47 1 4.2799 -4.7724 12.6943 48 1 5.9105 -5.0676 7.5457 49 1 7.3533 -4.0712 7.9045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979177015.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:07 Heat of formation + Delta-G solvation = 22.931984 kcal Electronic energy + Delta-G solvation = -29350.958791 eV Core-core repulsion = 25280.417895 eV Total energy + Delta-G solvation = -4070.540896 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.22905 -39.47140 -38.66528 -38.41161 -34.98432 -33.57400 -33.51357 -32.80352 -30.93664 -30.51371 -27.56146 -27.44429 -27.12012 -25.27823 -24.59222 -23.63094 -21.60267 -21.18640 -20.80028 -19.92692 -19.26137 -18.86437 -17.71675 -17.23547 -16.81938 -16.12086 -15.75930 -15.45831 -15.13642 -14.95124 -14.72675 -14.54465 -14.21459 -14.13764 -13.63106 -13.50447 -13.35700 -13.01670 -12.76669 -12.74468 -12.64551 -12.60308 -12.55643 -12.22982 -11.84057 -11.27239 -11.23327 -11.11139 -11.06857 -10.85407 -10.65510 -10.34041 -10.32002 -10.29278 -10.13062 -9.82260 -9.74209 -9.40178 -9.13332 -8.98349 -8.78395 -8.64297 -6.88105 -5.80981 -3.15437 0.35759 0.88434 2.69158 2.75879 3.03526 3.37461 3.42888 3.44827 3.55107 3.86645 4.13834 4.34449 4.44514 4.46495 4.57018 4.62892 4.69108 4.76515 4.88761 4.93810 5.09857 5.26937 5.30041 5.38681 5.41447 5.44120 5.45133 5.48764 5.51288 5.53711 5.65496 5.79816 5.84883 5.89273 5.90157 5.92520 5.97274 6.01678 6.22404 6.36683 6.55567 6.65266 6.70190 6.91062 6.99814 7.34263 7.36159 7.50438 7.52247 7.70875 8.19317 8.19942 9.09889 9.72622 10.49594 11.33293 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.001834 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.227723 B =15265.941739 C =15959.122507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.075 3.925 3 C -0.149 4.149 4 O -0.263 6.263 5 C 0.376 3.624 6 N -0.547 5.547 7 C 0.165 3.835 8 C -0.222 4.222 9 C -0.007 4.007 10 C -0.210 4.210 11 C 0.561 3.439 12 O -0.518 6.518 13 N -0.722 5.722 14 C 0.157 3.843 15 C -0.150 4.150 16 H 0.102 0.898 17 C -0.161 4.161 18 H 0.103 0.897 19 C 0.184 3.816 20 N -0.595 5.595 21 C -0.227 4.227 22 H 0.077 0.923 23 C -0.006 4.006 24 N -0.916 5.916 25 Si 0.913 3.087 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.154 3.846 30 C -0.172 4.172 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.164 0.836 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.398 0.602 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.023 0.977 47 H 0.254 0.746 48 H 0.023 0.977 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.490 3.272 -27.432 28.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.019 3.981 3 C -0.207 4.207 4 O -0.168 6.168 5 C 0.195 3.805 6 N -0.271 5.271 7 C 0.008 3.992 8 C -0.242 4.242 9 C -0.033 4.033 10 C -0.216 4.216 11 C 0.347 3.653 12 O -0.394 6.394 13 N -0.374 5.374 14 C 0.034 3.966 15 C -0.169 4.169 16 H 0.120 0.880 17 C -0.182 4.182 18 H 0.122 0.878 19 C 0.058 3.942 20 N -0.318 5.318 21 C -0.355 4.355 22 H 0.094 0.906 23 C -0.203 4.203 24 N -0.562 5.562 25 Si 0.743 3.257 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.205 1.205 29 C 0.028 3.972 30 C -0.192 4.192 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.181 0.819 40 H 0.162 0.838 41 H 0.164 0.836 42 H 0.233 0.767 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.108 0.892 46 H 0.041 0.959 47 H 0.064 0.936 48 H 0.041 0.959 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.870 4.815 -27.506 29.013 hybrid contribution 0.758 -1.147 1.216 1.835 sum -7.113 3.668 -26.291 27.482 Atomic orbital electron populations 1.22211 0.94779 1.02747 1.02753 1.22451 0.94553 0.93222 0.87880 1.21882 1.02078 0.93701 1.03001 1.86603 1.77956 1.14674 1.37546 1.19830 0.87327 0.85212 0.88087 1.67432 1.22943 1.12766 1.23985 1.22668 0.90046 0.87648 0.98834 1.21939 1.06094 1.02169 0.94031 1.21702 0.91430 0.92189 0.98007 1.20072 1.12221 0.94320 0.95015 1.17750 0.77819 0.86837 0.82939 1.90840 1.51150 1.13842 1.83541 1.45906 1.67779 1.12070 1.11679 1.20872 1.00687 0.94009 0.81036 1.22525 0.99520 0.99430 0.95435 0.87974 1.24236 1.01971 1.01538 0.90415 0.87849 1.21070 0.85954 0.92046 0.95134 1.45211 1.09090 1.78074 0.99424 1.19012 0.89530 1.41748 0.85186 0.90562 1.24903 0.95992 1.01198 0.98257 1.69900 1.07701 1.54664 1.23933 0.86087 0.79175 0.77462 0.82941 1.21520 1.21672 1.20504 1.21132 0.96891 0.92887 0.86297 1.24001 0.89507 1.02219 1.03437 0.87906 0.91732 0.91092 0.92173 0.89404 0.91802 0.90595 0.91305 0.81902 0.83787 0.83645 0.76695 0.90993 0.91315 0.89155 0.95871 0.93560 0.95888 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 9.53 37.16 0.35 -1.07 16 2 C 0.08 0.74 3.11 -26.73 -0.08 0.66 16 3 C -0.15 -1.24 9.56 37.16 0.36 -0.88 16 4 O -0.26 -3.50 7.86 -39.73 -0.31 -3.81 16 5 C 0.38 4.59 7.47 -16.61 -0.12 4.46 16 6 N -0.55 -5.53 8.64 -12.98 -0.11 -5.64 16 7 C 0.17 1.17 11.17 -17.49 -0.20 0.97 16 8 C -0.22 -1.40 10.09 -39.50 -0.40 -1.80 16 9 C -0.01 -0.06 9.64 -38.89 -0.37 -0.43 16 10 C -0.21 -2.43 5.90 -104.69 -0.62 -3.05 16 11 C 0.56 7.78 7.77 -12.48 -0.10 7.69 16 12 O -0.52 -9.09 15.19 -16.49 -0.25 -9.34 16 13 N -0.72 -8.64 5.51 -61.35 -0.34 -8.98 16 14 C 0.16 2.15 5.95 -4.04 -0.02 2.12 16 15 C -0.15 -2.26 5.39 -90.63 -0.49 -2.75 16 16 H 0.10 1.50 8.04 -51.92 -0.42 1.08 16 17 C -0.16 -3.01 6.85 -89.22 -0.61 -3.62 16 18 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 19 C 0.18 4.36 5.70 -2.41 -0.01 4.34 16 20 N -0.59 -15.11 3.38 -168.86 -0.57 -15.68 16 21 C -0.23 -6.28 10.35 -15.06 -0.16 -6.44 16 22 H 0.08 2.05 7.84 -52.48 -0.41 1.63 16 23 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 24 N -0.92 -26.68 10.86 55.49 0.60 -26.07 16 25 Si 0.91 21.87 29.56 -169.99 -5.03 16.84 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 C 0.15 3.17 7.04 -2.41 -0.02 3.15 16 30 C -0.17 -2.98 6.74 -89.22 -0.60 -3.59 16 31 H 0.10 1.67 8.12 -51.93 -0.42 1.25 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.83 6.98 -51.93 -0.36 0.47 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.16 0.60 8.06 -52.49 -0.42 0.17 16 40 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 41 H 0.15 0.79 6.52 -52.49 -0.34 0.45 16 42 H 0.40 3.69 6.50 -40.82 -0.27 3.42 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 45 H 0.09 2.41 6.51 -51.93 -0.34 2.07 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 402.44 15.07 6.06 6.06 Total: -1.00 -34.10 402.44 -10.73 -44.83 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.60 Total: 2.30 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -3.19 Total: -0.51 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.42 Total: -56.37 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.56 Total: -13.15 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.10 -10.73 -44.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979177015.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.766 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds