Wall clock time and date at job start Wed Apr 1 2020 04:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 O 1.42891 * 109.47576 * 134.99910 * 3 2 1 5 5 C 1.35646 * 117.00104 * 179.97438 * 4 3 2 6 6 C 1.39334 * 120.54089 * 0.02562 * 5 4 3 7 7 C 1.38307 * 118.43980 * 180.02562 * 6 5 4 8 8 C 1.38759 * 119.44563 * 0.02562 * 7 6 5 9 9 N 1.31375 * 121.06470 * 0.02562 * 8 7 6 10 10 C 1.32855 * 121.69983 * 359.66143 * 9 8 7 11 11 C 1.47830 * 119.78677 * 180.31206 * 10 9 8 12 12 O 1.21551 * 120.00092 * 180.31178 * 11 10 9 13 13 N 1.34783 * 119.99742 * 0.31255 * 11 10 9 14 14 C 1.46496 * 119.99596 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47634 * 324.99626 * 14 13 11 16 16 C 1.53001 * 109.47387 * 84.99960 * 14 13 11 17 17 C 1.53002 * 109.47358 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47011 * 300.00005 * 17 16 14 19 19 C 1.52998 * 109.47544 * 60.00016 * 18 17 16 20 20 H 1.08993 * 109.47424 * 179.97438 * 19 18 17 21 21 N 1.46502 * 109.47119 * 59.99722 * 19 18 17 22 22 C 1.36938 * 119.99934 * 85.00277 * 21 19 18 23 23 H 1.07996 * 119.99615 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00139 * 180.02562 * 22 21 19 25 25 N 1.31623 * 119.99828 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00132 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47336 * 59.99833 * 26 24 22 28 28 H 1.48499 * 109.46985 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46962 * 299.99872 * 26 24 22 30 30 C 1.53002 * 109.46953 * 300.00020 * 19 18 17 31 31 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 33 33 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 34 34 H 1.08999 * 109.46395 * 255.00340 * 3 2 1 35 35 H 1.09003 * 109.46770 * 14.99552 * 3 2 1 36 36 H 1.08001 * 120.78139 * 0.02562 * 6 5 4 37 37 H 1.08008 * 120.27506 * 180.02562 * 7 6 5 38 38 H 1.08005 * 119.46836 * 180.02562 * 8 7 6 39 39 H 0.96996 * 119.99803 * 359.97438 * 13 11 10 40 40 H 1.09006 * 109.47140 * 299.99706 * 16 14 13 41 41 H 1.09003 * 109.47121 * 60.00044 * 16 14 13 42 42 H 1.09000 * 109.47182 * 180.02562 * 17 16 14 43 43 H 1.09003 * 109.46835 * 60.00032 * 17 16 14 44 44 H 1.09003 * 109.47343 * 299.99716 * 18 17 16 45 45 H 1.09000 * 109.47385 * 180.02562 * 18 17 16 46 46 H 0.97003 * 119.99776 * 265.00910 * 21 19 18 47 47 H 0.96997 * 119.99837 * 180.02562 * 25 24 22 48 48 H 1.09000 * 109.47515 * 299.99903 * 30 19 18 49 49 H 1.09000 * 109.47182 * 179.97438 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9526 5 6 3.9083 2.3429 1.0778 6 6 3.6661 3.4748 0.3022 7 6 4.4903 4.5735 0.4649 8 6 5.5259 4.5188 1.3868 9 7 5.7362 3.4402 2.1069 10 6 4.9680 2.3625 1.9907 11 6 5.2387 1.1741 2.8272 12 8 4.5419 0.1839 2.7201 13 7 6.2582 1.1886 3.7087 14 6 6.5268 0.0107 4.5373 15 1 5.5853 -0.4731 4.7973 16 6 7.4064 -0.9703 3.7595 17 6 7.6874 -2.2002 4.6251 18 6 8.4102 -1.7700 5.9031 19 6 7.5307 -0.7891 6.6810 20 1 8.0454 -0.4830 7.5917 21 7 6.2654 -1.4394 7.0309 22 6 6.1802 -2.2080 8.1610 23 1 7.0456 -2.3344 8.7945 24 6 4.9815 -2.8247 8.4922 25 7 3.9269 -2.6710 7.7198 26 14 4.8650 -3.8725 10.0342 27 1 5.1811 -3.0407 11.2231 28 1 3.4886 -4.4154 10.1610 29 1 5.8330 -4.9951 9.9440 30 6 7.2497 0.4408 5.8154 31 1 -0.5401 -0.9353 0.0004 32 1 -0.5400 0.9354 0.0044 33 1 1.8500 -0.9353 0.0004 34 1 2.4755 1.4867 -0.9927 35 1 1.3855 2.1161 0.2659 36 1 2.8539 3.4937 -0.4095 37 1 4.3291 5.4666 -0.1207 38 1 6.1694 5.3767 1.5145 39 1 6.8145 1.9786 3.7939 40 1 6.8917 -1.2765 2.8487 41 1 8.3480 -0.4865 3.4996 42 1 8.3145 -2.8988 4.0711 43 1 6.7460 -2.6841 4.8854 44 1 9.3517 -1.2861 5.6428 45 1 8.6109 -2.6462 6.5196 46 1 5.4880 -1.3256 6.4619 47 1 3.0892 -3.1016 7.9515 48 1 8.1910 0.9247 5.5550 49 1 6.6227 1.1394 6.3694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981448489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:10 Heat of formation + Delta-G solvation = -7.027673 kcal Electronic energy + Delta-G solvation = -30384.640835 eV Core-core repulsion = 26312.800790 eV Total energy + Delta-G solvation = -4071.840044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.11001 -39.38112 -38.55963 -37.67518 -34.48494 -34.19555 -33.05702 -32.47753 -30.89202 -30.76748 -29.02562 -27.90221 -27.01485 -24.87501 -23.55686 -23.16197 -21.91367 -21.72587 -20.49840 -20.06801 -18.87736 -18.36645 -17.56184 -17.33911 -17.05614 -16.42514 -15.63913 -15.48328 -15.17680 -14.82032 -14.53570 -14.48723 -14.30848 -13.83613 -13.61079 -13.48505 -13.46785 -13.25292 -13.08646 -12.92030 -12.31331 -12.17015 -11.90291 -11.83669 -11.66602 -11.29302 -11.27332 -10.80188 -10.73057 -10.63636 -10.24972 -10.15553 -10.11228 -10.06268 -9.96404 -9.84309 -9.72358 -9.43564 -9.32501 -8.81001 -8.72177 -8.49970 -6.84159 -5.64675 -2.93651 0.46600 0.93951 1.78965 2.86231 2.99201 3.31952 3.50611 3.54807 3.56115 3.78114 4.08889 4.25501 4.40389 4.53192 4.68230 4.69871 4.72120 4.79768 4.92203 5.13066 5.20253 5.29138 5.36198 5.54752 5.58799 5.63929 5.66255 5.70367 5.83209 5.86569 5.97897 6.02357 6.05105 6.21207 6.24659 6.29430 6.32195 6.34312 6.51233 6.56971 6.74642 6.85076 6.94159 6.96658 6.97774 7.13871 7.22005 7.47800 7.79557 7.90994 8.53141 8.55474 9.63983 10.22780 10.57179 11.57407 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010723 B = 0.002889 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.653490 B = 9690.527748 C =11285.821724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.151 4.151 3 C 0.079 3.921 4 O -0.263 6.263 5 C 0.139 3.861 6 C -0.179 4.179 7 C -0.110 4.110 8 C 0.055 3.945 9 N -0.420 5.420 10 C 0.050 3.950 11 C 0.565 3.435 12 O -0.506 6.506 13 N -0.708 5.708 14 C 0.146 3.854 15 H 0.099 0.901 16 C -0.120 4.120 17 C -0.109 4.109 18 C -0.135 4.135 19 C 0.179 3.821 20 H 0.051 0.949 21 N -0.721 5.721 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.930 5.930 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 C -0.127 4.127 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.164 0.836 39 H 0.403 0.597 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.078 0.922 44 H 0.042 0.958 45 H 0.060 0.940 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.061 0.939 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 15.884 -20.137 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.004 3.996 4 O -0.173 6.173 5 C 0.088 3.912 6 C -0.205 4.205 7 C -0.130 4.130 8 C -0.106 4.106 9 N -0.131 5.131 10 C -0.089 4.089 11 C 0.349 3.651 12 O -0.380 6.380 13 N -0.359 5.359 14 C 0.043 3.957 15 H 0.117 0.883 16 C -0.159 4.159 17 C -0.147 4.147 18 C -0.175 4.175 19 C 0.069 3.931 20 H 0.068 0.932 21 N -0.364 5.364 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.578 5.578 26 Si 0.735 3.265 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 C -0.166 4.166 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.182 0.818 39 H 0.238 0.762 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.220 0.780 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.895 14.786 -19.326 24.349 hybrid contribution -0.905 0.134 -0.185 0.933 sum -0.010 14.919 -19.510 24.561 Atomic orbital electron populations 1.23860 0.95335 1.02547 0.99085 1.22629 0.95629 0.97775 1.00901 1.21990 0.88059 0.97546 0.92012 1.86490 1.40639 1.33174 1.56966 1.20045 0.90755 0.86969 0.93450 1.21749 1.02970 0.93466 1.02320 1.22180 0.94526 0.98486 0.97829 1.22688 0.97607 0.96270 0.94010 1.67628 1.24876 0.98899 1.21742 1.20878 0.94179 0.95089 0.98802 1.17597 0.81297 0.85870 0.80374 1.90890 1.47745 1.32585 1.66733 1.45963 1.32152 1.18372 1.39384 1.21078 1.00368 0.84997 0.89298 0.88321 1.21847 0.98740 0.96567 0.98700 1.21355 1.01818 0.96150 0.95385 1.22174 0.97531 1.00778 0.97046 1.20158 0.88902 0.89776 0.94294 0.93151 1.42516 1.07696 1.58015 1.28190 1.19180 0.95771 1.21897 1.00093 0.91322 1.24730 0.96052 1.01293 0.98861 1.69665 1.01184 1.48215 1.38742 0.86317 0.76533 0.80375 0.83230 1.21424 1.21831 1.21404 1.22070 0.99661 0.99493 0.95377 0.87236 0.88421 0.85760 0.90989 0.91402 0.83773 0.84043 0.81838 0.76201 0.92340 0.92793 0.93380 0.90344 0.93897 0.92077 0.77986 0.93533 0.92004 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 14.31 29.02 0.42 -1.02 16 2 C -0.15 -1.54 9.89 -36.02 -0.36 -1.89 16 3 C 0.08 0.76 5.17 36.01 0.19 0.95 16 4 O -0.26 -3.76 8.18 -40.59 -0.33 -4.09 16 5 C 0.14 1.81 6.71 -38.56 -0.26 1.55 16 6 C -0.18 -1.57 9.13 -39.15 -0.36 -1.93 16 7 C -0.11 -0.79 10.10 -39.36 -0.40 -1.19 16 8 C 0.05 0.48 11.17 -17.55 -0.20 0.28 16 9 N -0.42 -5.13 9.54 -9.71 -0.09 -5.22 16 10 C 0.05 0.73 6.76 -82.88 -0.56 0.17 16 11 C 0.57 9.98 7.77 -12.33 -0.10 9.89 16 12 O -0.51 -10.81 14.80 -16.63 -0.25 -11.05 16 13 N -0.71 -11.33 5.07 -54.75 -0.28 -11.60 16 14 C 0.15 2.62 2.28 -67.93 -0.16 2.46 16 15 H 0.10 2.21 5.94 -51.93 -0.31 1.90 16 16 C -0.12 -2.04 5.49 -26.73 -0.15 -2.18 16 17 C -0.11 -2.00 5.77 -26.73 -0.15 -2.15 16 18 C -0.13 -2.47 5.61 -26.73 -0.15 -2.62 16 19 C 0.18 3.60 3.10 -67.93 -0.21 3.39 16 20 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 21 N -0.72 -18.27 4.28 -53.43 -0.23 -18.50 16 22 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.94 13.06 55.49 0.72 -28.22 16 26 Si 0.90 22.91 29.55 -169.99 -5.02 17.89 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 C -0.13 -2.17 5.08 -26.73 -0.14 -2.30 16 31 H 0.11 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.10 0.66 7.90 -52.48 -0.41 0.25 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.07 0.53 7.70 -51.93 -0.40 0.13 16 35 H 0.07 0.53 7.42 -51.93 -0.39 0.14 16 36 H 0.14 0.85 6.46 -52.49 -0.34 0.51 16 37 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 38 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.40 5.51 7.93 -40.82 -0.32 5.19 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.72 7.60 -51.93 -0.39 1.33 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 46 H 0.38 10.57 6.06 -40.82 -0.25 10.32 16 47 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 48 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 400.01 15.07 6.03 6.03 Total: -1.00 -34.86 400.01 -9.70 -44.55 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -7.43 Total: 14.14 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -2.82 Total: -3.92 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: 0.13 Total: -63.54 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.58 Total: -15.15 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.86 -9.70 -44.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981448489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.524 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds