Wall clock time and date at job start Wed Apr 1 2020 04:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 O 1.42891 * 109.47576 * 134.99910 * 3 2 1 5 5 C 1.35646 * 117.00104 * 179.97438 * 4 3 2 6 6 C 1.39334 * 120.54089 * 0.02562 * 5 4 3 7 7 C 1.38307 * 118.43980 * 180.02562 * 6 5 4 8 8 C 1.38759 * 119.44563 * 0.02562 * 7 6 5 9 9 N 1.31375 * 121.06470 * 0.02562 * 8 7 6 10 10 C 1.32855 * 121.69983 * 359.66143 * 9 8 7 11 11 C 1.47830 * 119.78677 * 180.31206 * 10 9 8 12 12 O 1.21551 * 120.00092 * 180.31178 * 11 10 9 13 13 N 1.34783 * 119.99742 * 0.31255 * 11 10 9 14 14 C 1.46496 * 119.99596 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47634 * 324.99626 * 14 13 11 16 16 C 1.53001 * 109.47387 * 84.99960 * 14 13 11 17 17 C 1.53002 * 109.47358 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47011 * 300.00005 * 17 16 14 19 19 C 1.52998 * 109.47544 * 60.00016 * 18 17 16 20 20 H 1.08993 * 109.47424 * 179.97438 * 19 18 17 21 21 N 1.46502 * 109.47119 * 59.99722 * 19 18 17 22 22 C 1.36938 * 119.99934 * 85.00277 * 21 19 18 23 23 H 1.07996 * 119.99615 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00139 * 180.02562 * 22 21 19 25 25 N 1.31623 * 119.99828 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00132 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47336 * 59.99833 * 26 24 22 28 28 H 1.48499 * 109.46985 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46962 * 299.99872 * 26 24 22 30 30 C 1.53002 * 109.46953 * 300.00020 * 19 18 17 31 31 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 33 33 H 1.07998 * 120.00195 * 179.97438 * 2 1 3 34 34 H 1.08999 * 109.46395 * 255.00340 * 3 2 1 35 35 H 1.09003 * 109.46770 * 14.99552 * 3 2 1 36 36 H 1.08001 * 120.78139 * 0.02562 * 6 5 4 37 37 H 1.08008 * 120.27506 * 180.02562 * 7 6 5 38 38 H 1.08005 * 119.46836 * 180.02562 * 8 7 6 39 39 H 0.96996 * 119.99803 * 359.97438 * 13 11 10 40 40 H 1.09006 * 109.47140 * 299.99706 * 16 14 13 41 41 H 1.09003 * 109.47121 * 60.00044 * 16 14 13 42 42 H 1.09000 * 109.47182 * 180.02562 * 17 16 14 43 43 H 1.09003 * 109.46835 * 60.00032 * 17 16 14 44 44 H 1.09003 * 109.47343 * 299.99716 * 18 17 16 45 45 H 1.09000 * 109.47385 * 180.02562 * 18 17 16 46 46 H 0.97003 * 119.99776 * 265.00910 * 21 19 18 47 47 H 0.96997 * 119.99837 * 180.02562 * 25 24 22 48 48 H 1.09000 * 109.47515 * 299.99903 * 30 19 18 49 49 H 1.09000 * 109.47182 * 179.97438 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9526 5 6 3.9083 2.3429 1.0778 6 6 3.6661 3.4748 0.3022 7 6 4.4903 4.5735 0.4649 8 6 5.5259 4.5188 1.3868 9 7 5.7362 3.4402 2.1069 10 6 4.9680 2.3625 1.9907 11 6 5.2387 1.1741 2.8272 12 8 4.5419 0.1839 2.7201 13 7 6.2582 1.1886 3.7087 14 6 6.5268 0.0107 4.5373 15 1 5.5853 -0.4731 4.7973 16 6 7.4064 -0.9703 3.7595 17 6 7.6874 -2.2002 4.6251 18 6 8.4102 -1.7700 5.9031 19 6 7.5307 -0.7891 6.6810 20 1 8.0454 -0.4830 7.5917 21 7 6.2654 -1.4394 7.0309 22 6 6.1802 -2.2080 8.1610 23 1 7.0456 -2.3344 8.7945 24 6 4.9815 -2.8247 8.4922 25 7 3.9269 -2.6710 7.7198 26 14 4.8650 -3.8725 10.0342 27 1 5.1811 -3.0407 11.2231 28 1 3.4886 -4.4154 10.1610 29 1 5.8330 -4.9951 9.9440 30 6 7.2497 0.4408 5.8154 31 1 -0.5401 -0.9353 0.0004 32 1 -0.5400 0.9354 0.0044 33 1 1.8500 -0.9353 0.0004 34 1 2.4755 1.4867 -0.9927 35 1 1.3855 2.1161 0.2659 36 1 2.8539 3.4937 -0.4095 37 1 4.3291 5.4666 -0.1207 38 1 6.1694 5.3767 1.5145 39 1 6.8145 1.9786 3.7939 40 1 6.8917 -1.2765 2.8487 41 1 8.3480 -0.4865 3.4996 42 1 8.3145 -2.8988 4.0711 43 1 6.7460 -2.6841 4.8854 44 1 9.3517 -1.2861 5.6428 45 1 8.6109 -2.6462 6.5196 46 1 5.4880 -1.3256 6.4619 47 1 3.0892 -3.1016 7.9515 48 1 8.1910 0.9247 5.5550 49 1 6.6227 1.1394 6.3694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981448489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:08 Heat of formation + Delta-G solvation = -30.522368 kcal Electronic energy + Delta-G solvation = -30385.659641 eV Core-core repulsion = 26312.800790 eV Total energy + Delta-G solvation = -4072.858851 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.00222 -40.70673 -39.43952 -39.11223 -35.99338 -35.12212 -34.70023 -33.39229 -32.67944 -31.69420 -30.50831 -29.60230 -27.72930 -25.89627 -25.59745 -23.93394 -23.30310 -23.14857 -21.72848 -20.94299 -20.24879 -19.35721 -19.19581 -18.68721 -18.10980 -17.27916 -16.96832 -16.58241 -16.41149 -16.18154 -15.81284 -15.64277 -15.32793 -15.30414 -15.17574 -15.04935 -14.62606 -14.49516 -14.08795 -13.73076 -13.71138 -13.43005 -13.39745 -13.05270 -12.87233 -12.78108 -12.60816 -12.57836 -12.18490 -12.18080 -12.01746 -11.80889 -11.57927 -11.49181 -11.23128 -11.06662 -10.83950 -10.80689 -10.65883 -10.43266 -10.01771 -9.48906 -8.94879 -7.88654 -5.17088 -0.35918 0.22285 1.05867 1.45685 1.49631 1.55484 1.79471 2.10092 2.26113 2.58794 2.83634 3.21271 3.43843 3.56070 3.66029 3.76562 3.88437 3.91936 4.01730 4.04343 4.07161 4.14587 4.19224 4.27232 4.36488 4.45019 4.45401 4.47880 4.58974 4.69683 4.76056 4.80520 4.87807 4.91055 5.01095 5.02753 5.09421 5.20386 5.31750 5.42233 5.43196 5.47901 5.54199 5.55842 5.62707 5.64889 5.67180 6.21970 6.32231 6.50818 6.84293 7.29537 7.37404 8.16860 8.38229 9.34752 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010723 B = 0.002889 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.653490 B = 9690.527748 C =11285.821724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.184 4.184 3 C 0.076 3.924 4 O -0.305 6.305 5 C 0.120 3.880 6 C -0.173 4.173 7 C -0.085 4.085 8 C 0.055 3.945 9 N -0.436 5.436 10 C 0.006 3.994 11 C 0.557 3.443 12 O -0.561 6.561 13 N -0.697 5.697 14 C 0.154 3.846 15 H 0.042 0.958 16 C -0.108 4.108 17 C -0.105 4.105 18 C -0.125 4.125 19 C 0.169 3.831 20 H 0.056 0.944 21 N -0.735 5.735 22 C -0.232 4.232 23 H 0.079 0.921 24 C -0.083 4.083 25 N -0.974 5.974 26 Si 0.972 3.028 27 H -0.276 1.276 28 H -0.301 1.301 29 H -0.278 1.278 30 C -0.114 4.114 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.177 0.823 37 H 0.192 0.808 38 H 0.202 0.798 39 H 0.416 0.584 40 H 0.039 0.961 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.028 0.972 44 H 0.086 0.914 45 H 0.043 0.957 46 H 0.369 0.631 47 H 0.247 0.753 48 H 0.107 0.893 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.586 19.455 -21.578 29.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.202 4.202 3 C 0.002 3.998 4 O -0.216 6.216 5 C 0.069 3.931 6 C -0.199 4.199 7 C -0.104 4.104 8 C -0.107 4.107 9 N -0.148 5.148 10 C -0.130 4.130 11 C 0.343 3.657 12 O -0.439 6.439 13 N -0.348 5.348 14 C 0.049 3.951 15 H 0.061 0.939 16 C -0.147 4.147 17 C -0.143 4.143 18 C -0.165 4.165 19 C 0.060 3.940 20 H 0.074 0.926 21 N -0.376 5.376 22 C -0.364 4.364 23 H 0.097 0.903 24 C -0.275 4.275 25 N -0.625 5.625 26 Si 0.801 3.199 27 H -0.202 1.202 28 H -0.227 1.227 29 H -0.204 1.204 30 C -0.153 4.153 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.194 0.806 37 H 0.209 0.791 38 H 0.219 0.781 39 H 0.254 0.746 40 H 0.058 0.942 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.105 0.895 45 H 0.062 0.938 46 H 0.202 0.798 47 H 0.055 0.945 48 H 0.125 0.875 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.820 18.382 -20.753 27.867 hybrid contribution -1.457 -0.812 0.142 1.674 sum 1.363 17.570 -20.611 27.118 Atomic orbital electron populations 1.24097 0.94676 1.03906 0.96514 1.22683 0.96514 0.97638 1.03402 1.22220 0.87600 0.97613 0.92405 1.86443 1.41939 1.34722 1.58504 1.20324 0.90546 0.88061 0.94197 1.22170 1.03893 0.92180 1.01657 1.22764 0.92217 0.99145 0.96305 1.23485 0.98272 0.95896 0.93087 1.67549 1.24951 0.99222 1.23034 1.20384 0.96872 0.95089 1.00681 1.18250 0.80543 0.86554 0.80333 1.90847 1.49523 1.35001 1.68499 1.45779 1.32198 1.18145 1.38687 1.20778 0.98095 0.85805 0.90431 0.93935 1.21739 0.99739 0.95883 0.97320 1.21282 0.99815 0.96933 0.96251 1.22051 0.98687 0.99778 0.95995 1.20489 0.87020 0.91034 0.95457 0.92564 1.42763 1.09269 1.58204 1.27368 1.19639 0.95728 1.20684 1.00376 0.90276 1.25579 0.95997 1.03587 1.02288 1.69874 1.01572 1.50117 1.40963 0.85225 0.75980 0.78859 0.79797 1.20206 1.22740 1.20448 1.21952 1.01393 0.97980 0.93936 0.86720 0.86142 0.88195 0.88706 0.89248 0.80570 0.79089 0.78093 0.74596 0.94233 0.89230 0.91224 0.95326 0.89545 0.93815 0.79798 0.94460 0.87459 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 14.31 67.79 0.97 -1.62 16 2 C -0.18 -4.01 9.89 25.65 0.25 -3.75 16 3 C 0.08 1.46 5.17 71.24 0.37 1.83 16 4 O -0.30 -9.28 8.18 -68.62 -0.56 -9.84 16 5 C 0.12 3.13 6.71 22.93 0.15 3.28 16 6 C -0.17 -2.52 9.13 22.55 0.21 -2.32 16 7 C -0.08 -0.80 10.10 22.41 0.23 -0.58 16 8 C 0.06 0.75 11.17 84.89 0.95 1.69 16 9 N -0.44 -10.05 9.54 -184.63 -1.76 -11.81 16 10 C 0.01 0.18 6.76 41.93 0.28 0.46 16 11 C 0.56 21.17 7.77 86.78 0.67 21.84 16 12 O -0.56 -26.63 14.80 17.11 0.25 -26.38 16 13 N -0.70 -23.15 5.07 -445.41 -2.26 -25.41 16 14 C 0.15 5.75 2.28 45.00 0.10 5.85 16 15 H 0.04 2.10 5.94 -2.39 -0.01 2.09 16 16 C -0.11 -3.73 5.49 30.60 0.17 -3.56 16 17 C -0.10 -3.90 5.77 30.59 0.18 -3.72 16 18 C -0.13 -4.43 5.61 30.59 0.17 -4.25 16 19 C 0.17 6.73 3.10 44.99 0.14 6.87 16 20 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 21 N -0.74 -38.86 4.28 -322.95 -1.38 -40.24 16 22 C -0.23 -13.37 9.93 84.03 0.83 -12.54 16 23 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 24 C -0.08 -5.02 5.50 84.86 0.47 -4.55 16 25 N -0.97 -64.06 13.06 21.65 0.28 -63.78 16 26 Si 0.97 48.51 29.55 68.60 2.03 50.54 16 27 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 28 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 29 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 30 C -0.11 -3.82 5.08 30.60 0.16 -3.67 16 31 H 0.11 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.12 1.43 7.90 -2.91 -0.02 1.41 16 33 H 0.10 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.10 1.29 7.70 -2.39 -0.02 1.27 16 35 H 0.09 1.26 7.42 -2.39 -0.02 1.24 16 36 H 0.18 1.33 6.46 -2.91 -0.02 1.31 16 37 H 0.19 -0.02 8.06 -2.91 -0.02 -0.05 16 38 H 0.20 1.10 8.06 -2.91 -0.02 1.07 16 39 H 0.42 11.26 7.93 -92.71 -0.73 10.52 16 40 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.03 1.34 7.60 -2.39 -0.02 1.32 16 44 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.37 21.84 6.06 -92.71 -0.56 21.27 16 47 H 0.25 15.87 8.31 -92.71 -0.77 15.10 16 48 H 0.11 2.65 8.14 -2.39 -0.02 2.64 16 49 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -85.73 400.01 2.57 -83.16 By element: Atomic # 1 Polarization: 42.84 SS G_CDS: -0.33 Total: 42.51 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 6.30 Total: 1.27 kcal Atomic # 7 Polarization: -136.13 SS G_CDS: -5.12 Total: -141.24 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.31 Total: -36.22 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -85.73 2.57 -83.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981448489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.635 kcal (2) G-P(sol) polarization free energy of solvation -85.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds