Wall clock time and date at job start Wed Apr 1 2020 04:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 120.00014 * 2 1 4 4 O 1.42897 * 109.47156 * 135.00264 * 3 2 1 5 5 C 1.35640 * 117.00494 * 180.02562 * 4 3 2 6 6 C 1.39342 * 120.53894 * 359.97438 * 5 4 3 7 7 C 1.38298 * 118.44019 * 180.02562 * 6 5 4 8 8 C 1.38762 * 119.44968 * 0.02562 * 7 6 5 9 9 N 1.31381 * 121.06300 * 359.73651 * 8 7 6 10 10 C 1.32858 * 121.69385 * 0.53495 * 9 8 7 11 11 C 1.47834 * 119.77923 * 179.74895 * 10 9 8 12 12 O 1.21561 * 119.99248 * 179.71990 * 11 10 9 13 13 N 1.34772 * 120.00286 * 359.72596 * 11 10 9 14 14 C 1.46496 * 120.00151 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47021 * 324.99552 * 14 13 11 16 16 C 1.53005 * 109.47414 * 84.99440 * 14 13 11 17 17 C 1.52997 * 109.47452 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46817 * 300.00239 * 17 16 14 19 19 C 1.53000 * 109.47233 * 60.00194 * 18 17 16 20 20 H 1.09002 * 109.47398 * 59.99826 * 19 18 17 21 21 N 1.46500 * 109.47023 * 179.97438 * 19 18 17 22 22 C 1.36931 * 119.99971 * 274.99678 * 21 19 18 23 23 H 1.08005 * 120.00425 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00390 * 180.02562 * 22 21 19 25 25 N 1.31615 * 120.00668 * 180.02562 * 24 22 21 26 26 Si 1.86807 * 119.99606 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.46957 * 90.00190 * 26 24 22 28 28 H 1.48504 * 109.47174 * 209.99865 * 26 24 22 29 29 H 1.48499 * 109.46983 * 330.00165 * 26 24 22 30 30 C 1.52997 * 109.47060 * 299.99657 * 19 18 17 31 31 H 1.08000 * 119.99733 * 359.97438 * 1 2 3 32 32 H 1.07996 * 119.99859 * 180.02562 * 1 2 3 33 33 H 1.08000 * 119.99854 * 180.02562 * 2 1 3 34 34 H 1.09002 * 109.47210 * 15.00548 * 3 2 1 35 35 H 1.08996 * 109.47163 * 255.00800 * 3 2 1 36 36 H 1.08005 * 120.77927 * 0.02562 * 6 5 4 37 37 H 1.08006 * 120.27642 * 180.02562 * 7 6 5 38 38 H 1.07999 * 119.47280 * 179.97438 * 8 7 6 39 39 H 0.96994 * 119.99727 * 359.97438 * 13 11 10 40 40 H 1.09002 * 109.46935 * 60.00059 * 16 14 13 41 41 H 1.09001 * 109.46812 * 300.00401 * 16 14 13 42 42 H 1.08993 * 109.47194 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.46695 * 59.99734 * 17 16 14 44 44 H 1.08992 * 109.47063 * 299.99823 * 18 17 16 45 45 H 1.09004 * 109.46733 * 179.97438 * 18 17 16 46 46 H 0.97004 * 120.00223 * 94.99655 * 21 19 18 47 47 H 0.96997 * 120.00544 * 180.02562 * 25 24 22 48 48 H 1.08996 * 109.47853 * 180.02562 * 30 19 18 49 49 H 1.09002 * 109.47153 * 300.00319 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9077 2.3431 1.0787 6 6 3.6656 3.4751 0.3031 7 6 4.4890 4.5741 0.4667 8 6 5.5240 4.5197 1.3894 9 7 5.7309 3.4431 2.1134 10 6 4.9702 2.3611 1.9884 11 6 5.2444 1.1706 2.8210 12 8 4.5477 0.1803 2.7134 13 7 6.2666 1.1834 3.6992 14 6 6.5386 0.0035 4.5238 15 1 5.5982 -0.4815 4.7855 16 6 7.4163 -0.9749 3.7406 17 6 7.6999 -2.2074 4.6015 18 6 8.4260 -1.7811 5.8790 19 6 7.5482 -0.8028 6.6622 20 1 6.6076 -1.2877 6.9236 21 7 8.2433 -0.3950 7.8857 22 6 8.1578 -1.1690 9.0120 23 1 7.5776 -2.0799 8.9987 24 6 8.8159 -0.7825 10.1715 25 7 8.7341 -1.5266 11.2540 26 14 9.8188 0.7934 10.1950 27 1 8.9511 1.9262 10.6061 28 1 10.9393 0.6528 11.1594 29 1 10.3632 1.0538 8.8381 30 6 7.2647 0.4297 5.8013 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3856 2.1161 0.2661 35 1 2.4754 1.4868 -0.9926 36 1 2.8539 3.4938 -0.4092 37 1 4.3279 5.4672 -0.1188 38 1 6.1675 5.3776 1.5172 39 1 6.8226 1.9735 3.7847 40 1 8.3567 -0.4899 3.4789 41 1 6.8988 -1.2789 2.8307 42 1 8.3247 -2.9046 4.0434 43 1 6.7592 -2.6922 4.8628 44 1 9.3665 -1.2962 5.6177 45 1 8.6276 -2.6591 6.4925 46 1 8.7641 0.4232 7.8979 47 1 9.1937 -1.2563 12.0643 48 1 6.6397 1.1269 6.3593 49 1 8.2053 0.9146 5.5399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981448490.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:14 Heat of formation + Delta-G solvation = -7.995484 kcal Electronic energy + Delta-G solvation = -29773.038613 eV Core-core repulsion = 25701.156601 eV Total energy + Delta-G solvation = -4071.882012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.28063 -39.56988 -38.71897 -37.80446 -34.77184 -34.49117 -33.40854 -32.65797 -31.28996 -30.98347 -29.33832 -28.13578 -27.18644 -25.04763 -23.46207 -23.28599 -22.13965 -21.44711 -20.46413 -20.19376 -19.62863 -18.72212 -18.03928 -17.44285 -17.31592 -16.60911 -15.95492 -15.64416 -15.37416 -15.01871 -14.70657 -14.51443 -14.46543 -14.03724 -13.81317 -13.67487 -13.53878 -13.35139 -13.23349 -13.14339 -12.60865 -12.45497 -12.18256 -12.16000 -12.00638 -11.47965 -11.21091 -10.95147 -10.91683 -10.79240 -10.44008 -10.34574 -10.29076 -10.21603 -10.12500 -9.99386 -9.91657 -9.60214 -9.52949 -8.97318 -8.85688 -8.74133 -7.22192 -5.72403 -3.07647 0.30619 0.79230 1.60208 2.65513 2.80892 3.08910 3.40887 3.43733 3.48445 3.58735 3.92513 4.10535 4.23932 4.37128 4.53868 4.54945 4.63118 4.65159 4.78276 4.91807 4.95386 5.06764 5.10663 5.34316 5.37917 5.43758 5.50308 5.51667 5.60410 5.67044 5.71656 5.86651 5.89347 5.90586 6.01891 6.10091 6.14579 6.15459 6.29120 6.34983 6.46331 6.54312 6.66501 6.72059 6.79725 6.95479 7.09726 7.31297 7.67362 8.04744 8.28647 8.46800 9.25506 9.98044 10.18131 11.46025 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014295 B = 0.002300 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.201749 B =12169.502778 C =13183.453952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.152 4.152 3 C 0.078 3.922 4 O -0.265 6.265 5 C 0.139 3.861 6 C -0.178 4.178 7 C -0.108 4.108 8 C 0.057 3.943 9 N -0.419 5.419 10 C 0.046 3.954 11 C 0.570 3.430 12 O -0.515 6.515 13 N -0.707 5.707 14 C 0.150 3.850 15 H 0.090 0.910 16 C -0.124 4.124 17 C -0.114 4.114 18 C -0.137 4.137 19 C 0.188 3.812 20 H 0.058 0.942 21 N -0.749 5.749 22 C -0.240 4.240 23 H 0.091 0.909 24 C 0.002 3.998 25 N -0.935 5.935 26 Si 0.884 3.116 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.277 1.277 30 C -0.133 4.133 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.166 0.834 39 H 0.407 0.593 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.070 0.930 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.445 12.067 -29.515 34.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.003 3.997 4 O -0.175 6.175 5 C 0.088 3.912 6 C -0.205 4.205 7 C -0.128 4.128 8 C -0.103 4.103 9 N -0.131 5.131 10 C -0.093 4.093 11 C 0.354 3.646 12 O -0.389 6.389 13 N -0.358 5.358 14 C 0.045 3.955 15 H 0.108 0.892 16 C -0.163 4.163 17 C -0.153 4.153 18 C -0.177 4.177 19 C 0.078 3.922 20 H 0.076 0.924 21 N -0.390 5.390 22 C -0.370 4.370 23 H 0.108 0.892 24 C -0.193 4.193 25 N -0.583 5.583 26 Si 0.715 3.285 27 H -0.212 1.212 28 H -0.219 1.219 29 H -0.203 1.203 30 C -0.172 4.172 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.183 0.817 39 H 0.242 0.758 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.346 10.893 -28.661 33.054 hybrid contribution 0.324 1.867 -0.684 2.014 sum -12.022 12.760 -29.345 34.183 Atomic orbital electron populations 1.23877 0.95334 1.02601 0.98998 1.22620 0.95594 0.97731 1.01010 1.21994 0.88046 0.97523 0.92109 1.86456 1.40739 1.33257 1.57048 1.20017 0.90706 0.86945 0.93533 1.21761 1.03016 0.93456 1.02232 1.22211 0.94344 0.98524 0.97695 1.22723 0.97544 0.96335 0.93734 1.67637 1.24803 0.98870 1.21758 1.20796 0.94424 0.94999 0.99068 1.17585 0.81079 0.85868 0.80105 1.90845 1.48289 1.32801 1.66986 1.45953 1.32029 1.18315 1.39475 1.21028 0.99499 0.85218 0.89725 0.89199 1.21894 0.99402 0.96378 0.98613 1.21477 1.00751 0.96453 0.96590 1.22252 0.99166 1.00983 0.95312 1.20074 0.94903 0.91576 0.85613 0.92435 1.42774 1.60030 1.27328 1.08916 1.19083 1.26161 1.04277 0.87431 0.89150 1.24672 1.00507 0.98327 0.95796 1.69698 1.47858 1.38977 1.01773 0.86550 0.80359 0.84582 0.77043 1.21165 1.21853 1.20316 1.22123 1.00238 1.00002 0.94821 0.88361 0.87241 0.85829 0.91355 0.90902 0.83708 0.83907 0.81694 0.75764 0.92076 0.92056 0.92395 0.91964 0.92774 0.91439 0.80724 0.93130 0.91170 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 14.31 29.01 0.42 -0.62 16 2 C -0.15 -1.17 9.89 -36.03 -0.36 -1.52 16 3 C 0.08 0.59 5.17 36.00 0.19 0.77 16 4 O -0.27 -3.14 8.18 -40.57 -0.33 -3.47 16 5 C 0.14 1.53 6.71 -38.56 -0.26 1.27 16 6 C -0.18 -1.29 9.13 -39.15 -0.36 -1.64 16 7 C -0.11 -0.64 10.10 -39.37 -0.40 -1.03 16 8 C 0.06 0.43 11.17 -17.55 -0.20 0.24 16 9 N -0.42 -4.55 9.54 -9.71 -0.09 -4.64 16 10 C 0.05 0.58 6.76 -82.88 -0.56 0.02 16 11 C 0.57 8.49 7.77 -12.34 -0.10 8.39 16 12 O -0.51 -9.10 14.80 -16.64 -0.25 -9.34 16 13 N -0.71 -9.64 5.07 -54.75 -0.28 -9.92 16 14 C 0.15 2.20 2.45 -67.93 -0.17 2.04 16 15 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16 16 C -0.12 -1.75 5.49 -26.73 -0.15 -1.89 16 17 C -0.11 -1.67 5.92 -26.73 -0.16 -1.83 16 18 C -0.14 -2.41 5.50 -26.73 -0.15 -2.56 16 19 C 0.19 3.63 2.77 -67.93 -0.19 3.44 16 20 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 21 N -0.75 -17.75 4.93 -53.43 -0.26 -18.01 16 22 C -0.24 -6.79 10.41 -15.06 -0.16 -6.95 16 23 H 0.09 2.75 8.06 -52.48 -0.42 2.32 16 24 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 25 N -0.94 -29.65 13.97 55.49 0.78 -28.87 16 26 Si 0.88 22.31 27.74 -169.99 -4.71 17.60 16 27 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 29 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 30 C -0.13 -2.11 4.86 -26.73 -0.13 -2.24 16 31 H 0.10 0.46 7.90 -52.49 -0.41 0.05 16 32 H 0.11 0.55 8.06 -52.49 -0.42 0.13 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.07 0.39 7.42 -51.93 -0.39 0.01 16 35 H 0.07 0.40 7.70 -51.93 -0.40 0.00 16 36 H 0.15 0.63 6.46 -52.48 -0.34 0.29 16 37 H 0.14 0.36 8.06 -52.48 -0.42 -0.07 16 38 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.41 4.96 7.93 -40.82 -0.32 4.64 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.36 8.38 5.66 -40.82 -0.23 8.15 16 47 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 48 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 401.33 15.07 6.05 6.05 Total: -1.00 -35.12 401.33 -9.48 -44.61 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.57 Total: 10.13 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.81 Total: -4.13 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 0.14 Total: -61.44 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.58 Total: -12.82 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.12 -9.48 -44.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981448490.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.611 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds