Wall clock time and date at job start Wed Apr 1 2020 04:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 120.00014 * 2 1 4 4 O 1.42897 * 109.47156 * 135.00264 * 3 2 1 5 5 C 1.35640 * 117.00494 * 180.02562 * 4 3 2 6 6 C 1.39342 * 120.53894 * 359.97438 * 5 4 3 7 7 C 1.38298 * 118.44019 * 180.02562 * 6 5 4 8 8 C 1.38762 * 119.44968 * 0.02562 * 7 6 5 9 9 N 1.31381 * 121.06300 * 359.73651 * 8 7 6 10 10 C 1.32858 * 121.69385 * 0.53495 * 9 8 7 11 11 C 1.47834 * 119.77923 * 179.74895 * 10 9 8 12 12 O 1.21561 * 119.99248 * 179.71990 * 11 10 9 13 13 N 1.34772 * 120.00286 * 359.72596 * 11 10 9 14 14 C 1.46496 * 120.00151 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47021 * 324.99552 * 14 13 11 16 16 C 1.53005 * 109.47414 * 84.99440 * 14 13 11 17 17 C 1.52997 * 109.47452 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46817 * 300.00239 * 17 16 14 19 19 C 1.53000 * 109.47233 * 60.00194 * 18 17 16 20 20 H 1.09002 * 109.47398 * 59.99826 * 19 18 17 21 21 N 1.46500 * 109.47023 * 179.97438 * 19 18 17 22 22 C 1.36931 * 119.99971 * 274.99678 * 21 19 18 23 23 H 1.08005 * 120.00425 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00390 * 180.02562 * 22 21 19 25 25 N 1.31615 * 120.00668 * 180.02562 * 24 22 21 26 26 Si 1.86807 * 119.99606 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.46957 * 90.00190 * 26 24 22 28 28 H 1.48504 * 109.47174 * 209.99865 * 26 24 22 29 29 H 1.48499 * 109.46983 * 330.00165 * 26 24 22 30 30 C 1.52997 * 109.47060 * 299.99657 * 19 18 17 31 31 H 1.08000 * 119.99733 * 359.97438 * 1 2 3 32 32 H 1.07996 * 119.99859 * 180.02562 * 1 2 3 33 33 H 1.08000 * 119.99854 * 180.02562 * 2 1 3 34 34 H 1.09002 * 109.47210 * 15.00548 * 3 2 1 35 35 H 1.08996 * 109.47163 * 255.00800 * 3 2 1 36 36 H 1.08005 * 120.77927 * 0.02562 * 6 5 4 37 37 H 1.08006 * 120.27642 * 180.02562 * 7 6 5 38 38 H 1.07999 * 119.47280 * 179.97438 * 8 7 6 39 39 H 0.96994 * 119.99727 * 359.97438 * 13 11 10 40 40 H 1.09002 * 109.46935 * 60.00059 * 16 14 13 41 41 H 1.09001 * 109.46812 * 300.00401 * 16 14 13 42 42 H 1.08993 * 109.47194 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.46695 * 59.99734 * 17 16 14 44 44 H 1.08992 * 109.47063 * 299.99823 * 18 17 16 45 45 H 1.09004 * 109.46733 * 179.97438 * 18 17 16 46 46 H 0.97004 * 120.00223 * 94.99655 * 21 19 18 47 47 H 0.96997 * 120.00544 * 180.02562 * 25 24 22 48 48 H 1.08996 * 109.47853 * 180.02562 * 30 19 18 49 49 H 1.09002 * 109.47153 * 300.00319 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9077 2.3431 1.0787 6 6 3.6656 3.4751 0.3031 7 6 4.4890 4.5741 0.4667 8 6 5.5240 4.5197 1.3894 9 7 5.7309 3.4431 2.1134 10 6 4.9702 2.3611 1.9884 11 6 5.2444 1.1706 2.8210 12 8 4.5477 0.1803 2.7134 13 7 6.2666 1.1834 3.6992 14 6 6.5386 0.0035 4.5238 15 1 5.5982 -0.4815 4.7855 16 6 7.4163 -0.9749 3.7406 17 6 7.6999 -2.2074 4.6015 18 6 8.4260 -1.7811 5.8790 19 6 7.5482 -0.8028 6.6622 20 1 6.6076 -1.2877 6.9236 21 7 8.2433 -0.3950 7.8857 22 6 8.1578 -1.1690 9.0120 23 1 7.5776 -2.0799 8.9987 24 6 8.8159 -0.7825 10.1715 25 7 8.7341 -1.5266 11.2540 26 14 9.8188 0.7934 10.1950 27 1 8.9511 1.9262 10.6061 28 1 10.9393 0.6528 11.1594 29 1 10.3632 1.0538 8.8381 30 6 7.2647 0.4297 5.8013 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3856 2.1161 0.2661 35 1 2.4754 1.4868 -0.9926 36 1 2.8539 3.4938 -0.4092 37 1 4.3279 5.4672 -0.1188 38 1 6.1675 5.3776 1.5172 39 1 6.8226 1.9735 3.7847 40 1 8.3567 -0.4899 3.4789 41 1 6.8988 -1.2789 2.8307 42 1 8.3247 -2.9046 4.0434 43 1 6.7592 -2.6922 4.8628 44 1 9.3665 -1.2962 5.6177 45 1 8.6276 -2.6591 6.4925 46 1 8.7641 0.4232 7.8979 47 1 9.1937 -1.2563 12.0643 48 1 6.6397 1.1269 6.3593 49 1 8.2053 0.9146 5.5399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981448490.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:12 Heat of formation + Delta-G solvation = -31.450891 kcal Electronic energy + Delta-G solvation = -29774.055715 eV Core-core repulsion = 25701.156601 eV Total energy + Delta-G solvation = -4072.899114 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.00779 -40.68151 -39.42457 -39.09899 -36.33212 -35.12612 -34.80393 -33.47123 -33.17009 -31.70242 -30.69617 -29.67229 -27.72076 -25.88190 -25.35466 -23.94130 -23.34972 -22.77102 -21.52541 -21.14764 -20.84678 -19.78448 -19.29103 -18.66380 -18.15094 -17.31809 -17.11882 -16.53680 -16.34844 -16.18436 -15.91940 -15.65655 -15.39830 -15.19147 -15.13622 -14.90220 -14.66057 -14.59134 -14.40604 -14.07997 -13.72422 -13.71334 -13.50988 -13.05182 -13.03143 -12.88008 -12.57120 -12.36889 -12.20321 -12.05221 -11.99984 -11.80045 -11.67442 -11.56061 -11.45794 -11.15687 -10.91438 -10.84620 -10.68091 -10.42552 -10.06990 -9.49591 -9.30454 -8.00380 -5.34108 -0.36800 0.21185 1.07907 1.38965 1.43053 1.50296 1.76638 2.05225 2.25121 2.50403 2.82458 3.19465 3.30231 3.44856 3.55504 3.66232 3.83237 3.89615 3.99770 4.01496 4.05397 4.09107 4.17665 4.26439 4.28671 4.36129 4.46096 4.47728 4.52730 4.54645 4.63855 4.73481 4.87303 4.92453 4.97547 5.00943 5.10412 5.14099 5.18655 5.33673 5.40767 5.46397 5.48810 5.58566 5.61670 5.64338 5.79283 6.20311 6.23460 6.47128 6.81726 7.09531 7.23286 7.84852 8.05831 9.21290 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014295 B = 0.002300 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.201749 B =12169.502778 C =13183.453952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.180 4.180 3 C 0.074 3.926 4 O -0.300 6.300 5 C 0.124 3.876 6 C -0.173 4.173 7 C -0.086 4.086 8 C 0.053 3.947 9 N -0.438 5.438 10 C 0.005 3.995 11 C 0.565 3.435 12 O -0.555 6.555 13 N -0.700 5.700 14 C 0.157 3.843 15 H 0.067 0.933 16 C -0.115 4.115 17 C -0.106 4.106 18 C -0.128 4.128 19 C 0.181 3.819 20 H 0.036 0.964 21 N -0.750 5.750 22 C -0.227 4.227 23 H 0.053 0.947 24 C -0.068 4.068 25 N -0.986 5.986 26 Si 0.958 3.042 27 H -0.279 1.279 28 H -0.297 1.297 29 H -0.248 1.248 30 C -0.118 4.118 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.177 0.823 37 H 0.189 0.811 38 H 0.197 0.803 39 H 0.415 0.585 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.040 0.960 46 H 0.367 0.633 47 H 0.257 0.743 48 H 0.066 0.934 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.270 16.011 -32.859 38.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.199 4.199 3 C 0.000 4.000 4 O -0.211 6.211 5 C 0.073 3.927 6 C -0.200 4.200 7 C -0.106 4.106 8 C -0.109 4.109 9 N -0.150 5.150 10 C -0.132 4.132 11 C 0.351 3.649 12 O -0.433 6.433 13 N -0.351 5.351 14 C 0.052 3.948 15 H 0.085 0.915 16 C -0.153 4.153 17 C -0.144 4.144 18 C -0.168 4.168 19 C 0.073 3.927 20 H 0.054 0.946 21 N -0.393 5.393 22 C -0.358 4.358 23 H 0.071 0.929 24 C -0.259 4.259 25 N -0.637 5.637 26 Si 0.785 3.215 27 H -0.205 1.205 28 H -0.224 1.224 29 H -0.173 1.173 30 C -0.157 4.157 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.194 0.806 37 H 0.206 0.794 38 H 0.214 0.786 39 H 0.252 0.748 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.200 0.800 47 H 0.066 0.934 48 H 0.085 0.915 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.178 14.845 -32.065 37.374 hybrid contribution 0.125 0.652 0.254 0.711 sum -12.053 15.497 -31.811 37.381 Atomic orbital electron populations 1.24100 0.94758 1.03851 0.96619 1.22659 0.96354 0.97545 1.03303 1.22225 0.87591 0.97806 0.92359 1.86411 1.41870 1.34438 1.58426 1.20250 0.90458 0.87968 0.94067 1.22169 1.03836 0.92277 1.01672 1.22737 0.92261 0.99263 0.96290 1.23417 0.98295 0.96030 0.93148 1.67564 1.25099 0.99319 1.23053 1.20435 0.96804 0.95044 1.00879 1.18075 0.80390 0.86447 0.79998 1.90807 1.49590 1.34581 1.68331 1.45807 1.32116 1.18088 1.39062 1.20787 0.98446 0.85880 0.89652 0.91490 1.21804 0.99789 0.95754 0.97967 1.21404 1.00418 0.97213 0.95415 1.22078 0.99430 0.99339 0.95906 1.20256 0.93918 0.93578 0.84942 0.94569 1.42732 1.60559 1.27016 1.08961 1.19001 1.24527 1.03243 0.89061 0.92893 1.25540 1.02543 1.02496 0.95332 1.69892 1.49669 1.41494 1.02621 0.85367 0.78270 0.79653 0.78232 1.20522 1.22399 1.17250 1.21920 1.01221 0.98069 0.94490 0.86474 0.86585 0.87747 0.89377 0.88989 0.80587 0.79407 0.78605 0.74765 0.90491 0.92373 0.90355 0.92666 0.91798 0.94091 0.80005 0.93417 0.91530 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 14.31 67.77 0.97 -0.75 16 2 C -0.18 -2.80 9.89 25.64 0.25 -2.54 16 3 C 0.07 1.04 5.17 71.24 0.37 1.41 16 4 O -0.30 -7.22 8.18 -68.56 -0.56 -7.78 16 5 C 0.12 2.61 6.71 22.93 0.15 2.76 16 6 C -0.17 -1.93 9.13 22.55 0.21 -1.72 16 7 C -0.09 -0.62 10.10 22.41 0.23 -0.39 16 8 C 0.05 0.62 11.17 84.89 0.95 1.57 16 9 N -0.44 -8.81 9.54 -184.63 -1.76 -10.58 16 10 C 0.00 0.12 6.76 41.93 0.28 0.40 16 11 C 0.56 17.34 7.77 86.78 0.67 18.02 16 12 O -0.56 -20.76 14.80 17.08 0.25 -20.51 16 13 N -0.70 -19.07 5.07 -445.42 -2.26 -21.33 16 14 C 0.16 4.66 2.45 44.99 0.11 4.77 16 15 H 0.07 2.31 7.58 -2.39 -0.02 2.29 16 16 C -0.11 -3.13 5.49 30.60 0.17 -2.96 16 17 C -0.11 -3.06 5.92 30.59 0.18 -2.88 16 18 C -0.13 -4.49 5.50 30.60 0.17 -4.32 16 19 C 0.18 7.09 2.77 44.99 0.12 7.22 16 20 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 21 N -0.75 -35.55 4.93 -322.94 -1.59 -37.14 16 22 C -0.23 -13.26 10.41 84.03 0.87 -12.38 16 23 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 24 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 25 N -0.99 -64.57 13.97 21.65 0.30 -64.27 16 26 Si 0.96 46.10 27.74 68.60 1.90 48.00 16 27 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 28 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 29 H -0.25 -10.65 6.52 99.48 0.65 -10.00 16 30 C -0.12 -3.68 4.86 30.59 0.15 -3.53 16 31 H 0.12 0.82 7.90 -2.91 -0.02 0.80 16 32 H 0.12 1.07 8.06 -2.91 -0.02 1.05 16 33 H 0.10 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.09 0.81 7.42 -2.39 -0.02 0.80 16 35 H 0.09 0.84 7.70 -2.39 -0.02 0.82 16 36 H 0.18 0.73 6.46 -2.91 -0.02 0.71 16 37 H 0.19 -0.33 8.06 -2.91 -0.02 -0.35 16 38 H 0.20 0.89 8.06 -2.91 -0.02 0.87 16 39 H 0.42 9.78 7.93 -92.71 -0.74 9.05 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 44 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.37 16.42 5.66 -92.71 -0.52 15.89 16 47 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 48 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -81.72 401.33 2.26 -79.46 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: -0.36 Total: 33.11 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 6.33 Total: 1.03 kcal Atomic # 7 Polarization: -128.01 SS G_CDS: -5.31 Total: -133.31 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.31 Total: -28.29 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.90 Total: 48.00 kcal Total: -81.72 2.26 -79.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981448490.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.012 kcal (2) G-P(sol) polarization free energy of solvation -81.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds