Wall clock time and date at job start Wed Apr 1 2020 04:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47020 * 2 1 4 4 O 1.21281 * 120.00138 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99731 * 179.97438 * 3 2 1 6 6 C 1.39953 * 119.99740 * 186.68482 * 5 3 2 7 7 C 1.38986 * 120.00322 * 33.15165 * 6 5 3 8 8 C 1.38211 * 120.22439 * 180.23596 * 7 6 5 9 9 C 1.38026 * 120.22379 * 359.78380 * 8 7 6 10 10 C 1.39577 * 119.99119 * 359.97438 * 9 8 7 11 11 C 1.47862 * 120.10736 * 180.02562 * 10 9 8 12 12 O 1.21553 * 120.00016 * 7.35275 * 11 10 9 13 13 N 1.34777 * 120.00052 * 187.34795 * 11 10 9 14 14 C 1.47020 * 125.64629 * 354.15467 * 13 11 10 15 15 C 1.54322 * 107.27124 * 181.02460 * 14 13 11 16 16 H 1.08999 * 110.72233 * 263.65250 * 15 14 13 17 17 N 1.46500 * 110.72124 * 140.55954 * 15 14 13 18 18 C 1.36933 * 120.00016 * 86.45606 * 17 15 14 19 19 H 1.07995 * 120.00239 * 359.97438 * 18 17 15 20 20 C 1.38814 * 119.99913 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99992 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99945 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47090 * 90.00177 * 22 20 18 24 24 H 1.48499 * 109.46955 * 209.99998 * 22 20 18 25 25 H 1.48496 * 109.47223 * 329.99716 * 22 20 18 26 26 C 1.55161 * 102.94234 * 22.19519 * 15 14 13 27 27 C 1.47424 * 125.64705 * 173.85304 * 13 11 10 28 28 H 1.09002 * 110.36506 * 274.74217 * 27 13 11 29 29 C 1.52997 * 110.36821 * 37.06937 * 27 13 11 30 30 C 1.38596 * 119.99724 * 212.91806 * 6 5 3 31 31 H 1.09000 * 109.47333 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47231 * 300.00451 * 1 2 3 33 33 H 1.08998 * 109.46966 * 60.00087 * 1 2 3 34 34 H 1.08999 * 109.47231 * 239.99549 * 2 1 3 35 35 H 1.09001 * 109.46543 * 119.99611 * 2 1 3 36 36 H 0.96999 * 119.99782 * 6.67955 * 5 3 2 37 37 H 1.07998 * 119.88588 * 0.02562 * 7 6 5 38 38 H 1.07998 * 119.88949 * 179.76639 * 8 7 6 39 39 H 1.07994 * 120.00277 * 179.97438 * 9 8 7 40 40 H 1.08996 * 109.88538 * 300.44010 * 14 13 11 41 41 H 1.08997 * 109.87998 * 61.60778 * 14 13 11 42 42 H 0.96996 * 119.99796 * 266.45348 * 17 15 14 43 43 H 0.97005 * 120.00124 * 180.02562 * 21 20 18 44 44 H 1.08995 * 111.00476 * 82.57104 * 26 15 14 45 45 H 1.08997 * 111.00457 * 206.38692 * 26 15 14 46 46 H 1.08995 * 109.47734 * 58.54909 * 29 27 13 47 47 H 1.09007 * 109.46761 * 178.54707 * 29 27 13 48 48 H 1.09000 * 109.46995 * 298.53819 * 29 27 13 49 49 H 1.08001 * 120.11302 * 0.02562 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8254 2.9785 0.1416 7 6 3.1220 3.8871 0.9236 8 6 3.5773 5.1846 1.0622 9 6 4.7360 5.5857 0.4285 10 6 5.4523 4.6795 -0.3550 11 6 6.6943 5.1063 -1.0345 12 8 7.1656 6.2033 -0.8067 13 7 7.3038 4.2790 -1.9066 14 6 6.9148 2.8884 -2.1834 15 6 7.9092 2.3331 -3.2247 16 1 7.4986 2.4135 -4.2312 17 7 8.2580 0.9435 -2.9187 18 6 7.4720 -0.0776 -3.3822 19 1 6.5949 0.1415 -3.9728 20 6 7.8022 -1.3942 -3.0918 21 7 8.8710 -1.6612 -2.3715 22 14 6.7297 -2.7872 -3.7234 23 1 7.2161 -3.2204 -5.0578 24 1 6.7952 -3.9302 -2.7776 25 1 5.3252 -2.3183 -3.8366 26 6 9.1428 3.2588 -3.0553 27 6 8.4671 4.6204 -2.7453 28 1 8.1417 5.1035 -3.6667 29 6 9.4291 5.5289 -1.9772 30 6 4.9928 3.3699 -0.4946 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8901 36 1 3.9867 0.9354 -0.0968 37 1 2.2147 3.5790 1.4220 38 1 3.0245 5.8872 1.6681 39 1 5.0883 6.6006 0.5389 40 1 6.9689 2.2991 -1.2681 41 1 5.9022 2.8599 -2.5858 42 1 9.0456 0.7468 -2.3880 43 1 9.1020 -2.5813 -2.1689 44 1 9.7666 2.9303 -2.2240 45 1 9.7210 3.3119 -3.9777 46 1 9.7561 5.0256 -1.0675 47 1 10.2951 5.7510 -2.6009 48 1 8.9215 6.4576 -1.7164 49 1 5.5426 2.6645 -1.1000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988910271.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:41 Heat of formation + Delta-G solvation = -25.562665 kcal Electronic energy + Delta-G solvation = -30809.892616 eV Core-core repulsion = 26737.248835 eV Total energy + Delta-G solvation = -4072.643782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.97870 -41.21904 -39.44012 -38.61297 -35.98493 -35.80740 -33.94088 -33.72651 -33.20604 -31.29598 -30.68213 -30.09133 -27.13210 -26.02088 -25.78584 -24.86860 -23.55749 -22.66053 -21.78503 -21.43553 -20.39245 -19.17027 -18.52305 -18.40073 -17.73963 -17.42851 -17.01941 -16.74529 -16.56799 -16.21781 -15.63719 -15.47440 -15.36542 -15.15694 -14.98958 -14.69744 -14.45213 -14.32768 -14.24861 -13.69411 -13.54137 -13.30710 -13.21648 -13.08301 -12.95614 -12.89826 -12.78923 -12.63828 -12.62879 -12.23090 -12.07811 -12.04857 -11.81543 -11.69680 -11.56332 -11.45749 -11.04146 -10.94866 -10.61363 -10.05355 -9.70509 -9.21264 -9.03724 -7.90743 -5.21361 -0.21363 0.19870 1.45930 1.52896 1.55795 1.62727 1.82353 1.89025 2.03335 2.59729 2.80833 3.30627 3.39281 3.62257 3.74122 3.79542 3.84858 3.93845 4.10658 4.15686 4.17235 4.21026 4.24185 4.27727 4.35711 4.43452 4.50371 4.52280 4.66381 4.71754 4.72419 4.79889 4.84283 4.98706 5.04106 5.06667 5.10867 5.14651 5.20037 5.25438 5.31174 5.33137 5.37890 5.38739 5.55436 5.58535 5.87750 6.28810 6.33450 6.45283 7.03707 7.06992 7.37508 8.07583 8.32695 9.31851 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006155 B = 0.005152 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4548.357951 B = 5432.998289 C = 9646.035456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.141 4.141 3 C 0.510 3.490 4 O -0.559 6.559 5 N -0.670 5.670 6 C 0.132 3.868 7 C -0.106 4.106 8 C -0.105 4.105 9 C -0.083 4.083 10 C -0.127 4.127 11 C 0.570 3.430 12 O -0.565 6.565 13 N -0.603 5.603 14 C 0.078 3.922 15 C 0.164 3.836 16 H 0.072 0.928 17 N -0.723 5.723 18 C -0.241 4.241 19 H 0.082 0.918 20 C -0.064 4.064 21 N -0.966 5.966 22 Si 0.964 3.036 23 H -0.295 1.295 24 H -0.299 1.299 25 H -0.262 1.262 26 C -0.125 4.125 27 C 0.135 3.865 28 H 0.090 0.910 29 C -0.154 4.154 30 C -0.152 4.152 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.425 0.575 37 H 0.135 0.865 38 H 0.160 0.840 39 H 0.139 0.861 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.376 0.624 43 H 0.250 0.750 44 H 0.068 0.932 45 H 0.099 0.901 46 H 0.041 0.959 47 H 0.082 0.918 48 H 0.070 0.930 49 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.523 7.712 4.711 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.181 4.181 3 C 0.300 3.700 4 O -0.437 6.437 5 N -0.315 5.315 6 C 0.037 3.963 7 C -0.126 4.126 8 C -0.123 4.123 9 C -0.103 4.103 10 C -0.131 4.131 11 C 0.361 3.639 12 O -0.447 6.447 13 N -0.336 5.336 14 C -0.047 4.047 15 C 0.054 3.946 16 H 0.090 0.910 17 N -0.362 5.362 18 C -0.373 4.373 19 H 0.100 0.900 20 C -0.257 4.257 21 N -0.616 5.616 22 Si 0.794 3.206 23 H -0.223 1.223 24 H -0.226 1.226 25 H -0.186 1.186 26 C -0.164 4.164 27 C 0.033 3.967 28 H 0.108 0.892 29 C -0.211 4.211 30 C -0.172 4.172 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.263 0.737 37 H 0.153 0.847 38 H 0.178 0.822 39 H 0.157 0.843 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.209 0.791 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.117 0.883 46 H 0.060 0.940 47 H 0.100 0.900 48 H 0.088 0.912 49 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.037 8.784 4.779 14.893 hybrid contribution 0.308 -1.400 -0.072 1.435 sum -10.729 7.384 4.708 13.849 Atomic orbital electron populations 1.21536 0.92761 1.02842 1.02173 1.21762 0.98691 0.90708 1.06893 1.21684 0.81008 0.93506 0.73788 1.90684 1.55811 1.47804 1.49433 1.43721 1.08509 1.07262 1.72057 1.17793 0.95040 0.86294 0.97151 1.21439 1.00169 0.93984 0.97047 1.21256 0.95648 0.95806 0.99586 1.21350 0.94284 0.99798 0.94844 1.19731 0.96366 0.94878 1.02117 1.18171 0.83693 0.83593 0.78474 1.90656 1.66505 1.22609 1.64915 1.48497 1.31562 1.13366 1.40153 1.23425 1.00099 0.80696 1.00473 1.21418 0.93355 0.84027 0.95834 0.90964 1.42506 1.30686 0.99984 1.62979 1.19602 1.05475 0.86392 1.25811 0.90038 1.25454 0.99296 0.99583 1.01379 1.69808 1.28558 1.18678 1.44533 0.85282 0.79222 0.79287 0.76802 1.22302 1.22590 1.18628 1.23105 0.97317 0.92836 1.03106 1.22094 0.85184 0.95939 0.93517 0.89242 1.22093 0.99093 1.00191 0.99770 1.22699 0.97515 0.97088 0.99873 0.89667 0.92830 0.93417 0.86830 0.86016 0.73670 0.84747 0.82245 0.84278 0.91075 0.90744 0.79108 0.94078 0.91324 0.88275 0.93976 0.89950 0.91153 0.81379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.20 71.98 0.66 -1.44 16 2 C -0.14 -2.14 6.42 29.85 0.19 -1.94 16 3 C 0.51 11.68 7.54 87.66 0.66 12.34 16 4 O -0.56 -16.55 13.72 -3.03 -0.04 -16.59 16 5 N -0.67 -15.25 5.34 -303.60 -1.62 -16.87 16 6 C 0.13 3.53 6.27 38.11 0.24 3.77 16 7 C -0.11 -2.72 8.65 22.44 0.19 -2.53 16 8 C -0.10 -2.41 10.02 22.21 0.22 -2.19 16 9 C -0.08 -2.20 9.59 22.54 0.22 -1.99 16 10 C -0.13 -3.81 5.87 -20.10 -0.12 -3.93 16 11 C 0.57 18.72 7.64 86.79 0.66 19.38 16 12 O -0.57 -20.51 13.89 -3.88 -0.05 -20.57 16 13 N -0.60 -18.47 3.24 -803.70 -2.60 -21.07 16 14 C 0.08 2.44 4.62 86.73 0.40 2.84 16 15 C 0.16 5.50 3.59 46.18 0.17 5.67 16 16 H 0.07 2.38 8.12 -2.39 -0.02 2.36 16 17 N -0.72 -31.33 5.18 -317.33 -1.64 -32.97 16 18 C -0.24 -11.57 9.98 84.03 0.84 -10.73 16 19 H 0.08 3.70 7.83 -2.91 -0.02 3.68 16 20 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 21 N -0.97 -53.89 13.06 21.65 0.28 -53.60 16 22 Si 0.96 41.13 29.55 68.60 2.03 43.15 16 23 H -0.30 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.30 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 26 C -0.13 -3.56 6.12 32.07 0.20 -3.36 16 27 C 0.14 3.69 3.80 45.54 0.17 3.87 16 28 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 29 C -0.15 -4.11 8.63 71.98 0.62 -3.49 16 30 C -0.15 -4.32 8.53 22.66 0.19 -4.13 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.42 8.14 8.82 -92.71 -0.82 7.32 16 37 H 0.13 3.45 6.44 -2.91 -0.02 3.43 16 38 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 39 H 0.14 3.49 7.66 -2.91 -0.02 3.47 16 40 H 0.07 2.42 6.63 -2.39 -0.02 2.40 16 41 H 0.07 2.23 6.74 -2.39 -0.02 2.21 16 42 H 0.38 18.01 7.71 -92.71 -0.72 17.29 16 43 H 0.25 13.74 8.31 -92.70 -0.77 12.97 16 44 H 0.07 2.11 7.93 -2.39 -0.02 2.10 16 45 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 48 H 0.07 2.13 5.88 -2.39 -0.01 2.11 16 49 H 0.17 4.85 2.75 -7.80 -0.02 4.83 16 Total: -1.00 -65.15 393.33 1.78 -63.37 By element: Atomic # 1 Polarization: 46.38 SS G_CDS: -0.55 Total: 45.83 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 5.99 Total: 9.33 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -5.59 Total: -124.52 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.10 Total: -37.16 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Total: -65.15 1.78 -63.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988910271.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.803 kcal (2) G-P(sol) polarization free energy of solvation -65.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds