Wall clock time and date at job start Wed Apr 1 2020 04:52:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50707 * 109.46721 * 2 1
4 4 O 1.21277 * 120.00049 * 0.02562 * 3 2 1
5 5 N 1.34780 * 119.99265 * 179.97438 * 3 2 1
6 6 C 1.39956 * 119.99597 * 175.30835 * 5 3 2
7 7 C 1.38988 * 120.00284 * 215.19900 * 6 5 3
8 8 C 1.38208 * 120.22780 * 179.97438 * 7 6 5
9 9 C 1.38022 * 120.22093 * 359.97438 * 8 7 6
10 10 C 1.39577 * 119.99691 * 0.02562 * 9 8 7
11 11 C 1.47862 * 120.11219 * 179.97438 * 10 9 8
12 12 O 1.21548 * 119.99990 * 212.64386 * 11 10 9
13 13 N 1.34775 * 119.99881 * 32.64496 * 11 10 9
14 14 C 1.46926 * 120.63059 * 358.28699 * 13 11 10
15 15 C 1.53194 * 108.77239 * 126.41449 * 14 13 11
16 16 C 1.53033 * 109.31487 * 54.63641 * 15 14 13
17 17 C 1.53039 * 109.53970 * 298.63341 * 16 15 14
18 18 H 1.09008 * 109.49695 * 301.38128 * 17 16 15
19 19 N 1.46497 * 109.50269 * 181.31571 * 17 16 15
20 20 C 1.36936 * 120.00169 * 154.99815 * 19 17 16
21 21 H 1.08007 * 120.00091 * 0.02562 * 20 19 17
22 22 C 1.38816 * 120.00112 * 180.02562 * 20 19 17
23 23 N 1.31613 * 119.99637 * 359.72438 * 22 20 19
24 24 Si 1.86794 * 120.00118 * 180.02562 * 22 20 19
25 25 H 1.48495 * 109.47210 * 59.99965 * 24 22 20
26 26 H 1.48500 * 109.47360 * 180.02562 * 24 22 20
27 27 H 1.48501 * 109.47224 * 300.00001 * 24 22 20
28 28 C 1.46927 * 120.62986 * 178.31134 * 13 11 10
29 29 C 1.38598 * 119.99958 * 35.47492 * 6 5 3
30 30 H 1.09001 * 109.47644 * 59.99809 * 1 2 3
31 31 H 1.09004 * 109.47437 * 179.97438 * 1 2 3
32 32 H 1.09002 * 109.47258 * 299.99940 * 1 2 3
33 33 H 1.08999 * 109.46984 * 240.00775 * 2 1 3
34 34 H 1.08997 * 109.46961 * 119.99957 * 2 1 3
35 35 H 0.96998 * 120.00386 * 355.31488 * 5 3 2
36 36 H 1.08007 * 119.88249 * 359.97438 * 7 6 5
37 37 H 1.07997 * 119.89365 * 179.97438 * 8 7 6
38 38 H 1.07995 * 120.00338 * 180.02562 * 9 8 7
39 39 H 1.09003 * 109.58458 * 6.62841 * 14 13 11
40 40 H 1.08992 * 109.70663 * 246.26925 * 14 13 11
41 41 H 1.09004 * 109.49971 * 294.68341 * 15 14 13
42 42 H 1.08999 * 109.49496 * 174.58718 * 15 14 13
43 43 H 1.09005 * 109.46240 * 178.61236 * 16 15 14
44 44 H 1.08997 * 109.45417 * 58.64637 * 16 15 14
45 45 H 0.96998 * 120.00037 * 335.00499 * 19 17 16
46 46 H 0.97001 * 119.99900 * 179.97438 * 23 22 20
47 47 H 1.08995 * 109.58518 * 113.80077 * 28 13 11
48 48 H 1.09003 * 109.58828 * 353.37566 * 28 13 11
49 49 H 1.08004 * 120.11418 * 0.02562 * 29 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0322 1.4209 0.0000
4 8 1.2441 2.3427 0.0005
5 7 3.3574 1.6671 0.0005
6 6 3.8246 2.9826 -0.0986
7 6 4.9943 3.2538 -0.7987
8 6 5.4597 4.5512 -0.8999
9 6 4.7657 5.5865 -0.3070
10 6 3.5900 5.3248 0.3982
11 6 2.8448 6.4318 1.0349
12 8 2.2358 6.2389 2.0690
13 7 2.8408 7.6548 0.4686
14 6 3.6026 7.9129 -0.7609
15 6 2.6610 8.5191 -1.8062
16 6 1.9803 9.7567 -1.2172
17 6 1.1505 9.3522 0.0035
18 1 0.4077 8.6107 -0.2910
19 7 0.4742 10.5322 0.5480
20 6 -0.6781 10.3871 1.2733
21 1 -1.0883 9.4027 1.4444
22 6 -1.3192 11.5053 1.7888
23 7 -0.8165 12.7044 1.5849
24 14 -2.8908 11.3073 2.7789
25 1 -2.6212 10.4663 3.9726
26 1 -3.3741 12.6428 3.2126
27 1 -3.9268 10.6556 1.9380
28 6 2.0750 8.7554 1.0694
29 6 3.1240 4.0143 0.5061
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3634 -1.0277 -0.0005
32 1 -0.3634 0.5138 0.8900
33 1 1.8933 -0.5137 -0.8901
34 1 1.8933 -0.5138 0.8900
35 1 3.9871 0.9326 0.0695
36 1 5.5415 2.4478 -1.2651
37 1 6.3695 4.7557 -1.4448
38 1 5.1324 6.5990 -0.3887
39 1 4.0143 6.9771 -1.1389
40 1 4.4134 8.6105 -0.5513
41 1 1.9044 7.7851 -2.0835
42 1 3.2329 8.8041 -2.6893
43 1 1.3282 10.2042 -1.9674
44 1 2.7386 10.4799 -0.9173
45 1 0.8427 11.4162 0.3946
46 1 -1.2646 13.4858 1.9448
47 1 2.7599 9.5228 1.4301
48 1 1.4788 8.3756 1.8991
49 1 2.2175 3.8051 1.0547
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000999321895.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:52:28
Heat of formation + Delta-G solvation = -11.733000 kcal
Electronic energy + Delta-G solvation = -30255.752886 eV
Core-core repulsion = 26183.708804 eV
Total energy + Delta-G solvation = -4072.044083 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.20 seconds
Orbital eigenvalues (eV)
-41.03617 -40.09795 -38.38886 -37.15516 -35.26751 -34.37420 -33.25575 -32.30244
-31.40885 -31.03186 -30.02946 -28.07936 -25.71799 -25.24350 -24.01277 -23.22877
-22.63013 -21.75510 -20.59360 -20.40671 -19.26266 -17.85195 -17.59579 -17.06239
-16.72002 -16.16418 -16.05574 -15.58937 -15.19435 -14.90682 -14.57820 -14.37062
-14.13891 -13.92581 -13.82836 -13.58947 -13.35068 -13.34694 -12.90924 -12.71025
-12.63687 -12.43889 -12.25612 -12.13723 -12.02775 -11.77882 -11.55892 -11.17573
-10.99486 -10.77709 -10.74735 -10.55084 -10.34008 -10.17712 -10.09340 -9.78007
-9.72349 -9.48995 -9.11625 -9.01058 -8.41393 -8.27318 -6.95065 -5.73890
-3.03388 0.72621 1.08738 2.22801 2.63024 2.91096 3.25045 3.50590
3.53462 3.56442 3.69769 4.23369 4.46967 4.61095 4.63280 4.63707
4.66902 4.80757 4.87840 5.02260 5.06484 5.16602 5.21578 5.25091
5.34973 5.42083 5.53166 5.56531 5.57841 5.62231 5.72079 5.84767
5.89931 5.93877 5.98358 6.04535 6.10134 6.11723 6.20099 6.24341
6.28148 6.41294 6.55065 6.69751 6.81118 6.89102 6.98101 7.07213
7.70559 7.77038 7.77561 8.42226 8.45703 9.56265 10.10221 10.45885
11.48394
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.011356 B = 0.002758 C = 0.002350
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2465.039439 B =10150.024785 C =11911.931082
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.140 4.140
3 C 0.505 3.495
4 O -0.509 6.509
5 N -0.677 5.677
6 C 0.134 3.866
7 C -0.128 4.128
8 C -0.109 4.109
9 C -0.119 4.119
10 C -0.102 4.102
11 C 0.552 3.448
12 O -0.534 6.534
13 N -0.597 5.597
14 C 0.074 3.926
15 C -0.130 4.130
16 C -0.126 4.126
17 C 0.168 3.832
18 H 0.051 0.949
19 N -0.718 5.718
20 C -0.242 4.242
21 H 0.071 0.929
22 C -0.011 4.011
23 N -0.934 5.934
24 Si 0.907 3.093
25 H -0.284 1.284
26 H -0.291 1.291
27 H -0.285 1.285
28 C 0.093 3.907
29 C -0.067 4.067
30 H 0.063 0.937
31 H 0.063 0.937
32 H 0.065 0.935
33 H 0.096 0.904
34 H 0.096 0.904
35 H 0.411 0.589
36 H 0.128 0.872
37 H 0.133 0.867
38 H 0.148 0.852
39 H 0.108 0.892
40 H 0.070 0.930
41 H 0.065 0.935
42 H 0.071 0.929
43 H 0.067 0.933
44 H 0.061 0.939
45 H 0.385 0.615
46 H 0.256 0.744
47 H 0.062 0.938
48 H 0.091 0.909
49 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.841 -25.575 -9.532 32.071
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.180 4.180
3 C 0.293 3.707
4 O -0.383 6.383
5 N -0.323 5.323
6 C 0.040 3.960
7 C -0.148 4.148
8 C -0.127 4.127
9 C -0.138 4.138
10 C -0.106 4.106
11 C 0.340 3.660
12 O -0.412 6.412
13 N -0.329 5.329
14 C -0.048 4.048
15 C -0.169 4.169
16 C -0.164 4.164
17 C 0.057 3.943
18 H 0.069 0.931
19 N -0.358 5.358
20 C -0.373 4.373
21 H 0.089 0.911
22 C -0.207 4.207
23 N -0.582 5.582
24 Si 0.738 3.262
25 H -0.211 1.211
26 H -0.217 1.217
27 H -0.212 1.212
28 C -0.031 4.031
29 C -0.088 4.088
30 H 0.083 0.917
31 H 0.082 0.918
32 H 0.084 0.916
33 H 0.114 0.886
34 H 0.114 0.886
35 H 0.247 0.753
36 H 0.146 0.854
37 H 0.151 0.849
38 H 0.165 0.835
39 H 0.125 0.875
40 H 0.088 0.912
41 H 0.084 0.916
42 H 0.090 0.910
43 H 0.086 0.914
44 H 0.079 0.921
45 H 0.219 0.781
46 H 0.065 0.935
47 H 0.081 0.919
48 H 0.109 0.891
49 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges 15.683 -25.062 -8.879 30.869
hybrid contribution -0.297 -0.070 0.499 0.585
sum 15.386 -25.132 -8.381 30.636
Atomic orbital electron populations
1.21568 0.92516 1.01900 1.03867 1.21634 0.99133 0.92688 1.04547
1.21109 0.81524 0.92568 0.75472 1.90796 1.54910 1.46185 1.46369
1.43550 1.08043 1.06870 1.73817 1.17611 0.95494 0.84474 0.98391
1.21021 0.96712 0.97735 0.99363 1.20890 0.99891 0.91707 1.00253
1.21800 0.94707 1.00303 0.96962 1.19928 0.96589 0.93875 1.00215
1.18271 0.80906 0.82305 0.84533 1.90791 1.44256 1.82626 1.23491
1.48135 1.48668 1.10130 1.26009 1.22690 0.94624 1.02219 0.85263
1.21897 0.99049 0.98458 0.97515 1.21827 0.99355 0.96718 0.98535
1.20495 0.92388 0.90854 0.90575 0.93101 1.42362 1.27255 1.03112
1.63097 1.19248 0.99803 0.93059 1.25179 0.91088 1.24736 0.99426
0.95238 1.01293 1.69652 1.40954 0.97172 1.50387 0.86259 0.83270
0.76474 0.80194 1.21094 1.21697 1.21200 1.22811 0.94484 0.86789
0.99041 1.21338 1.00538 0.90251 0.96627 0.91742 0.91798 0.91622
0.88604 0.88576 0.75327 0.85443 0.84926 0.83462 0.87491 0.91182
0.91576 0.91023 0.91448 0.92059 0.78081 0.93458 0.91922 0.89078
0.83384
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.00 9.20 37.16 0.34 -0.66 16
2 C -0.14 -0.77 6.42 -27.88 -0.18 -0.95 16
3 C 0.51 4.92 7.67 -10.98 -0.08 4.84 16
4 O -0.51 -7.62 13.44 5.56 0.07 -7.54 16
5 N -0.68 -5.25 5.34 -9.89 -0.05 -5.31 16
6 C 0.13 1.41 6.29 -83.74 -0.53 0.88 16
7 C -0.13 -1.01 9.96 -39.31 -0.39 -1.40 16
8 C -0.11 -0.86 10.02 -39.67 -0.40 -1.26 16
9 C -0.12 -1.23 7.44 -39.16 -0.29 -1.53 16
10 C -0.10 -1.47 5.53 -104.99 -0.58 -2.05 16
11 C 0.55 10.05 7.45 -12.32 -0.09 9.96 16
12 O -0.53 -12.00 16.18 5.32 0.09 -11.91 16
13 N -0.60 -10.04 2.97 -173.87 -0.52 -10.56 16
14 C 0.07 0.92 4.90 -3.71 -0.02 0.90 16
15 C -0.13 -1.68 6.08 -26.61 -0.16 -1.85 16
16 C -0.13 -2.08 5.35 -26.69 -0.14 -2.22 16
17 C 0.17 3.52 2.92 -67.81 -0.20 3.32 16
18 H 0.05 1.16 8.08 -51.92 -0.42 0.74 16
19 N -0.72 -18.46 5.12 -53.30 -0.27 -18.73 16
20 C -0.24 -6.98 9.93 -15.06 -0.15 -7.13 16
21 H 0.07 2.05 7.83 -52.48 -0.41 1.64 16
22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16
23 N -0.93 -28.64 13.06 55.49 0.72 -27.91 16
24 Si 0.91 23.33 29.55 -169.99 -5.02 18.30 16
25 H -0.28 -7.29 7.11 56.52 0.40 -6.88 16
26 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16
27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
28 C 0.09 1.88 6.01 -3.71 -0.02 1.85 16
29 C -0.07 -0.96 8.25 -38.98 -0.32 -1.28 16
30 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16
31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16
32 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16
33 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16
34 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16
35 H 0.41 1.47 8.82 -40.82 -0.36 1.11 16
36 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16
37 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16
38 H 0.15 1.29 5.31 -52.49 -0.28 1.01 16
39 H 0.11 1.11 3.55 -53.39 -0.19 0.92 16
40 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16
41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16
42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
43 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16
44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
45 H 0.39 10.32 7.80 -40.82 -0.32 10.00 16
46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16
47 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16
48 H 0.09 2.15 7.01 -51.93 -0.36 1.79 16
49 H 0.15 2.57 6.15 -52.48 -0.32 2.25 16
LS Contribution 394.35 15.07 5.94 5.94
Total: -1.00 -37.53 394.35 -9.64 -47.17
By element:
Atomic # 1 Polarization: 16.82 SS G_CDS: -7.29 Total: 9.53 kcal
Atomic # 6 Polarization: 4.33 SS G_CDS: -3.31 Total: 1.02 kcal
Atomic # 7 Polarization: -62.39 SS G_CDS: -0.12 Total: -62.51 kcal
Atomic # 8 Polarization: -19.62 SS G_CDS: 0.16 Total: -19.46 kcal
Atomic # 14 Polarization: 23.33 SS G_CDS: -5.02 Total: 18.30 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -37.53 -9.64 -47.17 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999321895.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.439 kcal
(2) G-P(sol) polarization free energy of solvation -37.533 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.094 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.172 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.733 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.20 seconds