Wall clock time and date at job start Wed Apr 1 2020 04:52:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50707 * 109.46721 * 2 1
4 4 O 1.21277 * 120.00049 * 0.02562 * 3 2 1
5 5 N 1.34780 * 119.99265 * 179.97438 * 3 2 1
6 6 C 1.39956 * 119.99597 * 175.30835 * 5 3 2
7 7 C 1.38988 * 120.00284 * 215.19900 * 6 5 3
8 8 C 1.38208 * 120.22780 * 179.97438 * 7 6 5
9 9 C 1.38022 * 120.22093 * 359.97438 * 8 7 6
10 10 C 1.39577 * 119.99691 * 0.02562 * 9 8 7
11 11 C 1.47862 * 120.11219 * 179.97438 * 10 9 8
12 12 O 1.21548 * 119.99990 * 212.64386 * 11 10 9
13 13 N 1.34775 * 119.99881 * 32.64496 * 11 10 9
14 14 C 1.46926 * 120.63059 * 358.28699 * 13 11 10
15 15 C 1.53194 * 108.77239 * 126.41449 * 14 13 11
16 16 C 1.53033 * 109.31487 * 54.63641 * 15 14 13
17 17 C 1.53039 * 109.53970 * 298.63341 * 16 15 14
18 18 H 1.09008 * 109.49695 * 301.38128 * 17 16 15
19 19 N 1.46497 * 109.50269 * 181.31571 * 17 16 15
20 20 C 1.36936 * 120.00169 * 154.99815 * 19 17 16
21 21 H 1.08007 * 120.00091 * 0.02562 * 20 19 17
22 22 C 1.38816 * 120.00112 * 180.02562 * 20 19 17
23 23 N 1.31613 * 119.99637 * 359.72438 * 22 20 19
24 24 Si 1.86794 * 120.00118 * 180.02562 * 22 20 19
25 25 H 1.48495 * 109.47210 * 59.99965 * 24 22 20
26 26 H 1.48500 * 109.47360 * 180.02562 * 24 22 20
27 27 H 1.48501 * 109.47224 * 300.00001 * 24 22 20
28 28 C 1.46927 * 120.62986 * 178.31134 * 13 11 10
29 29 C 1.38598 * 119.99958 * 35.47492 * 6 5 3
30 30 H 1.09001 * 109.47644 * 59.99809 * 1 2 3
31 31 H 1.09004 * 109.47437 * 179.97438 * 1 2 3
32 32 H 1.09002 * 109.47258 * 299.99940 * 1 2 3
33 33 H 1.08999 * 109.46984 * 240.00775 * 2 1 3
34 34 H 1.08997 * 109.46961 * 119.99957 * 2 1 3
35 35 H 0.96998 * 120.00386 * 355.31488 * 5 3 2
36 36 H 1.08007 * 119.88249 * 359.97438 * 7 6 5
37 37 H 1.07997 * 119.89365 * 179.97438 * 8 7 6
38 38 H 1.07995 * 120.00338 * 180.02562 * 9 8 7
39 39 H 1.09003 * 109.58458 * 6.62841 * 14 13 11
40 40 H 1.08992 * 109.70663 * 246.26925 * 14 13 11
41 41 H 1.09004 * 109.49971 * 294.68341 * 15 14 13
42 42 H 1.08999 * 109.49496 * 174.58718 * 15 14 13
43 43 H 1.09005 * 109.46240 * 178.61236 * 16 15 14
44 44 H 1.08997 * 109.45417 * 58.64637 * 16 15 14
45 45 H 0.96998 * 120.00037 * 335.00499 * 19 17 16
46 46 H 0.97001 * 119.99900 * 179.97438 * 23 22 20
47 47 H 1.08995 * 109.58518 * 113.80077 * 28 13 11
48 48 H 1.09003 * 109.58828 * 353.37566 * 28 13 11
49 49 H 1.08004 * 120.11418 * 0.02562 * 29 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0322 1.4209 0.0000
4 8 1.2441 2.3427 0.0005
5 7 3.3574 1.6671 0.0005
6 6 3.8246 2.9826 -0.0986
7 6 4.9943 3.2538 -0.7987
8 6 5.4597 4.5512 -0.8999
9 6 4.7657 5.5865 -0.3070
10 6 3.5900 5.3248 0.3982
11 6 2.8448 6.4318 1.0349
12 8 2.2358 6.2389 2.0690
13 7 2.8408 7.6548 0.4686
14 6 3.6026 7.9129 -0.7609
15 6 2.6610 8.5191 -1.8062
16 6 1.9803 9.7567 -1.2172
17 6 1.1505 9.3522 0.0035
18 1 0.4077 8.6107 -0.2910
19 7 0.4742 10.5322 0.5480
20 6 -0.6781 10.3871 1.2733
21 1 -1.0883 9.4027 1.4444
22 6 -1.3192 11.5053 1.7888
23 7 -0.8165 12.7044 1.5849
24 14 -2.8908 11.3073 2.7789
25 1 -2.6212 10.4663 3.9726
26 1 -3.3741 12.6428 3.2126
27 1 -3.9268 10.6556 1.9380
28 6 2.0750 8.7554 1.0694
29 6 3.1240 4.0143 0.5061
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3634 -1.0277 -0.0005
32 1 -0.3634 0.5138 0.8900
33 1 1.8933 -0.5137 -0.8901
34 1 1.8933 -0.5138 0.8900
35 1 3.9871 0.9326 0.0695
36 1 5.5415 2.4478 -1.2651
37 1 6.3695 4.7557 -1.4448
38 1 5.1324 6.5990 -0.3887
39 1 4.0143 6.9771 -1.1389
40 1 4.4134 8.6105 -0.5513
41 1 1.9044 7.7851 -2.0835
42 1 3.2329 8.8041 -2.6893
43 1 1.3282 10.2042 -1.9674
44 1 2.7386 10.4799 -0.9173
45 1 0.8427 11.4162 0.3946
46 1 -1.2646 13.4858 1.9448
47 1 2.7599 9.5228 1.4301
48 1 1.4788 8.3756 1.8991
49 1 2.2175 3.8051 1.0547
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000999321895.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:52:26
Heat of formation + Delta-G solvation = -39.521786 kcal
Electronic energy + Delta-G solvation = -30256.957899 eV
Core-core repulsion = 26183.708804 eV
Total energy + Delta-G solvation = -4073.249095 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.17 seconds
Orbital eigenvalues (eV)
-41.98310 -41.20422 -39.38485 -38.64265 -36.48012 -35.82694 -34.07310 -33.77849
-32.81515 -32.19585 -31.04461 -29.69438 -27.03312 -26.15220 -25.70661 -24.34373
-23.61159 -23.03452 -21.81237 -21.30044 -20.58705 -19.21681 -18.87837 -18.34990
-17.65232 -17.27701 -16.91517 -16.76458 -16.68302 -16.33090 -15.74318 -15.60617
-15.43327 -15.30650 -15.05244 -14.84878 -14.64548 -14.35309 -14.12843 -13.98854
-13.77843 -13.61840 -13.25817 -13.18204 -12.94506 -12.83443 -12.79175 -12.63357
-12.46799 -12.28635 -12.07793 -11.99568 -11.90998 -11.69450 -11.49500 -11.40230
-11.14901 -10.91807 -10.77572 -10.04191 -9.76505 -9.19629 -9.06941 -8.03380
-5.32818 -0.15036 0.26053 1.39596 1.42838 1.48681 1.49419 1.66652
1.90735 2.09104 2.49414 2.76778 3.28801 3.38274 3.67459 3.71309
3.91592 3.95492 3.99079 4.07155 4.14983 4.17386 4.22716 4.23157
4.29003 4.32391 4.42561 4.50537 4.57746 4.67577 4.71901 4.81950
4.85232 4.87288 4.93963 5.00623 5.00901 5.09155 5.21821 5.25832
5.30043 5.33310 5.36579 5.37520 5.40812 5.44364 5.52706 5.93718
6.19508 6.36573 6.39478 7.04318 7.14044 7.26119 7.96922 8.24482
9.18861
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.011356 B = 0.002758 C = 0.002350
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2465.039439 B =10150.024785 C =11911.931082
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.129 4.129
3 C 0.496 3.504
4 O -0.574 6.574
5 N -0.660 5.660
6 C 0.127 3.873
7 C -0.105 4.105
8 C -0.091 4.091
9 C -0.115 4.115
10 C -0.128 4.128
11 C 0.541 3.459
12 O -0.599 6.599
13 N -0.595 5.595
14 C 0.068 3.932
15 C -0.122 4.122
16 C -0.117 4.117
17 C 0.167 3.833
18 H 0.022 0.978
19 N -0.727 5.727
20 C -0.251 4.251
21 H 0.059 0.941
22 C -0.064 4.064
23 N -0.961 5.961
24 Si 0.968 3.032
25 H -0.285 1.285
26 H -0.284 1.284
27 H -0.279 1.279
28 C 0.107 3.893
29 C -0.100 4.100
30 H 0.042 0.958
31 H 0.091 0.909
32 H 0.036 0.964
33 H 0.133 0.867
34 H 0.125 0.875
35 H 0.434 0.566
36 H 0.176 0.824
37 H 0.183 0.817
38 H 0.169 0.831
39 H 0.137 0.863
40 H 0.101 0.899
41 H 0.051 0.949
42 H 0.119 0.881
43 H 0.062 0.938
44 H 0.074 0.926
45 H 0.380 0.620
46 H 0.255 0.745
47 H 0.067 0.933
48 H 0.041 0.959
49 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.085 -28.052 -12.535 37.265
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.168 4.168
3 C 0.286 3.714
4 O -0.452 6.452
5 N -0.308 5.308
6 C 0.033 3.967
7 C -0.125 4.125
8 C -0.109 4.109
9 C -0.134 4.134
10 C -0.132 4.132
11 C 0.332 3.668
12 O -0.481 6.481
13 N -0.326 5.326
14 C -0.052 4.052
15 C -0.161 4.161
16 C -0.155 4.155
17 C 0.057 3.943
18 H 0.040 0.960
19 N -0.367 5.367
20 C -0.383 4.383
21 H 0.077 0.923
22 C -0.257 4.257
23 N -0.610 5.610
24 Si 0.796 3.204
25 H -0.212 1.212
26 H -0.210 1.210
27 H -0.205 1.205
28 C -0.018 4.018
29 C -0.122 4.122
30 H 0.062 0.938
31 H 0.110 0.890
32 H 0.055 0.945
33 H 0.151 0.849
34 H 0.143 0.857
35 H 0.275 0.725
36 H 0.193 0.807
37 H 0.200 0.800
38 H 0.186 0.814
39 H 0.154 0.846
40 H 0.119 0.881
41 H 0.070 0.930
42 H 0.137 0.863
43 H 0.080 0.920
44 H 0.093 0.907
45 H 0.213 0.787
46 H 0.064 0.936
47 H 0.085 0.915
48 H 0.060 0.940
49 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges 20.006 -27.602 -11.935 36.119
hybrid contribution -1.548 0.582 1.395 2.164
sum 18.458 -27.020 -10.539 34.378
Atomic orbital electron populations
1.21588 0.94276 1.02829 1.01475 1.21707 0.97494 0.90025 1.07587
1.22020 0.81679 0.93719 0.73980 1.90795 1.56634 1.48433 1.49349
1.43462 1.07984 1.06717 1.72616 1.17783 0.96119 0.84567 0.98265
1.21571 0.94714 0.99398 0.96839 1.21470 1.00408 0.90602 0.98389
1.22019 0.92934 1.02445 0.95976 1.19642 0.98595 0.92047 1.02918
1.19125 0.80366 0.83418 0.83934 1.90737 1.47214 1.83673 1.26508
1.48183 1.48275 1.08854 1.27263 1.23168 0.94616 1.04555 0.82876
1.21908 0.99055 0.96096 0.99019 1.21744 0.98981 0.98877 0.95920
1.20634 0.92275 0.88760 0.92588 0.96022 1.42451 1.26966 1.04197
1.63118 1.19442 1.00918 0.92611 1.25338 0.92340 1.25468 1.02544
0.95021 1.02680 1.69771 1.42208 0.97570 1.51481 0.85309 0.79852
0.76540 0.78664 1.21174 1.20950 1.20462 1.22260 0.94355 0.87775
0.97458 1.21109 1.00323 0.92027 0.98706 0.93830 0.89009 0.94479
0.84937 0.85650 0.72525 0.80691 0.79981 0.81357 0.84571 0.88086
0.92966 0.86284 0.91969 0.90734 0.78748 0.93628 0.91480 0.94002
0.88268
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.09 9.20 71.98 0.66 -1.43 16
2 C -0.13 -1.18 6.42 29.85 0.19 -0.99 16
3 C 0.50 9.72 7.67 87.66 0.67 10.39 16
4 O -0.57 -18.98 13.44 -3.02 -0.04 -19.02 16
5 N -0.66 -9.06 5.34 -303.60 -1.62 -10.68 16
6 C 0.13 2.47 6.29 38.11 0.24 2.71 16
7 C -0.11 -1.10 9.96 22.44 0.22 -0.88 16
8 C -0.09 -0.89 10.02 22.21 0.22 -0.66 16
9 C -0.12 -2.00 7.44 22.54 0.17 -1.83 16
10 C -0.13 -3.78 5.53 -20.10 -0.11 -3.89 16
11 C 0.54 21.30 7.45 86.79 0.65 21.95 16
12 O -0.60 -30.31 16.18 -3.87 -0.06 -30.37 16
13 N -0.59 -20.77 2.97 -822.30 -2.44 -23.21 16
14 C 0.07 1.50 4.90 86.36 0.42 1.92 16
15 C -0.12 -2.86 6.08 30.67 0.19 -2.67 16
16 C -0.12 -3.79 5.35 30.62 0.16 -3.62 16
17 C 0.17 7.41 2.92 45.07 0.13 7.54 16
18 H 0.02 1.07 8.08 -2.38 -0.02 1.05 16
19 N -0.73 -39.36 5.12 -322.55 -1.65 -41.02 16
20 C -0.25 -15.29 9.93 84.03 0.83 -14.46 16
21 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16
22 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16
23 N -0.96 -60.48 13.06 21.65 0.28 -60.20 16
24 Si 0.97 49.60 29.55 68.60 2.03 51.63 16
25 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16
26 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16
27 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16
28 C 0.11 4.64 6.01 86.36 0.52 5.16 16
29 C -0.10 -3.08 8.25 22.66 0.19 -2.89 16
30 H 0.04 0.80 8.10 -2.39 -0.02 0.78 16
31 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16
32 H 0.04 0.73 8.10 -2.39 -0.02 0.71 16
33 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16
34 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16
35 H 0.43 1.49 8.82 -92.71 -0.82 0.67 16
36 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16
37 H 0.18 0.16 8.06 -2.91 -0.02 0.14 16
38 H 0.17 2.14 5.31 -2.91 -0.02 2.13 16
39 H 0.14 2.30 3.55 -3.76 -0.01 2.28 16
40 H 0.10 1.71 8.13 -2.39 -0.02 1.69 16
41 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16
42 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16
43 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16
44 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16
45 H 0.38 21.14 7.80 -92.71 -0.72 20.41 16
46 H 0.25 15.47 8.31 -92.71 -0.77 14.69 16
47 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16
48 H 0.04 2.20 7.01 -2.39 -0.02 2.18 16
49 H 0.10 3.99 6.15 -2.91 -0.02 3.97 16
Total: -1.00 -95.85 394.35 1.76 -94.09
By element:
Atomic # 1 Polarization: 26.41 SS G_CDS: -0.56 Total: 25.86 kcal
Atomic # 6 Polarization: 7.09 SS G_CDS: 5.83 Total: 12.92 kcal
Atomic # 7 Polarization: -129.67 SS G_CDS: -5.43 Total: -135.10 kcal
Atomic # 8 Polarization: -49.29 SS G_CDS: -0.10 Total: -49.39 kcal
Atomic # 14 Polarization: 49.60 SS G_CDS: 2.03 Total: 51.63 kcal
Total: -95.85 1.76 -94.09 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999321895.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.570 kcal
(2) G-P(sol) polarization free energy of solvation -95.853 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.284 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.091 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.522 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds