Wall clock time and date at job start Wed Apr 1 2020 04:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.46943 * 2 1 4 4 O 1.21277 * 120.00192 * 359.97438 * 3 2 1 5 5 N 1.34781 * 120.00087 * 179.97438 * 3 2 1 6 6 C 1.39289 * 120.00313 * 176.12078 * 5 3 2 7 7 C 1.38849 * 120.16476 * 32.35190 * 6 5 3 8 8 C 1.38019 * 120.06952 * 180.02562 * 7 6 5 9 9 C 1.38565 * 120.40485 * 359.97438 * 8 7 6 10 10 C 1.37797 * 120.32919 * 359.69949 * 9 8 7 11 11 C 1.39692 * 119.92163 * 0.57952 * 10 9 8 12 12 C 1.47521 * 120.19807 * 179.72493 * 11 10 9 13 13 O 1.21596 * 119.99556 * 233.22275 * 12 11 10 14 14 N 1.34774 * 120.00001 * 53.21886 * 12 11 10 15 15 C 1.46926 * 120.63323 * 356.46337 * 14 12 11 16 16 C 1.53194 * 108.77360 * 126.40948 * 15 14 12 17 17 C 1.53042 * 109.31290 * 54.63874 * 16 15 14 18 18 C 1.53042 * 109.53301 * 298.62889 * 17 16 15 19 19 H 1.08997 * 109.50492 * 301.38115 * 18 17 16 20 20 N 1.46503 * 109.49183 * 181.31952 * 18 17 16 21 21 C 1.36938 * 119.99636 * 155.00677 * 20 18 17 22 22 H 1.08005 * 120.00284 * 359.97438 * 21 20 18 23 23 C 1.38821 * 119.99745 * 179.97438 * 21 20 18 24 24 N 1.31611 * 120.00025 * 359.71926 * 23 21 20 25 25 Si 1.86804 * 119.99700 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47343 * 59.99597 * 25 23 21 27 27 H 1.48497 * 109.46689 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46756 * 299.99263 * 25 23 21 29 29 C 1.46932 * 120.62545 * 176.48074 * 14 12 11 30 30 H 1.09002 * 109.46929 * 60.00473 * 1 2 3 31 31 H 1.09004 * 109.47566 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47827 * 300.00313 * 1 2 3 33 33 H 1.08995 * 109.47342 * 239.99485 * 2 1 3 34 34 H 1.09000 * 109.46500 * 119.99834 * 2 1 3 35 35 H 0.97003 * 119.99524 * 356.12019 * 5 3 2 36 36 H 1.07996 * 119.96612 * 359.97438 * 7 6 5 37 37 H 1.08002 * 119.79839 * 179.97438 * 8 7 6 38 38 H 1.07997 * 119.83470 * 180.02562 * 9 8 7 39 39 H 1.08001 * 120.04286 * 180.29823 * 10 9 8 40 40 H 1.08998 * 109.58497 * 6.62225 * 15 14 12 41 41 H 1.08996 * 109.58329 * 246.19746 * 15 14 12 42 42 H 1.09001 * 109.49819 * 294.68365 * 16 15 14 43 43 H 1.09005 * 109.49292 * 174.58761 * 16 15 14 44 44 H 1.09005 * 109.45934 * 178.61414 * 17 16 15 45 45 H 1.08996 * 109.45294 * 58.64628 * 17 16 15 46 46 H 0.96997 * 120.00125 * 334.99746 * 20 18 17 47 47 H 0.96997 * 120.00208 * 180.02562 * 24 23 21 48 48 H 1.08995 * 109.58173 * 113.80619 * 29 14 12 49 49 H 1.08997 * 109.58856 * 353.37416 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8222 2.9776 -0.0811 7 6 3.0909 4.0138 0.4842 8 6 3.5531 5.3116 0.4017 9 6 4.7472 5.5912 -0.2433 10 6 5.4896 4.5748 -0.8043 11 6 5.0318 3.2569 -0.7340 12 6 5.8187 2.1649 -1.3377 13 8 5.2949 1.4030 -2.1275 14 7 7.1180 2.0118 -1.0140 15 6 7.7851 2.9696 -0.1217 16 6 8.4360 2.1987 1.0310 17 6 9.3614 1.1215 0.4606 18 6 8.5440 0.1365 -0.3784 19 1 7.7691 -0.3141 0.2417 20 7 9.4255 -0.9119 -0.8980 21 6 8.9123 -2.1395 -1.2220 22 1 7.8578 -2.3348 -1.0940 23 6 9.7474 -3.1328 -1.7149 24 7 11.0315 -2.8930 -1.8760 25 14 9.0475 -4.8076 -2.1562 26 1 8.0152 -4.6501 -3.2119 27 1 10.1373 -5.6832 -2.6567 28 1 8.4334 -5.4205 -0.9509 29 6 7.8943 0.8840 -1.5471 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 3.9873 0.9317 0.0577 36 1 2.1591 3.8040 0.9882 37 1 2.9806 6.1143 0.8426 38 1 5.1004 6.6101 -0.3020 39 1 6.4220 4.7974 -1.3017 40 1 7.0513 3.6707 0.2759 41 1 8.5502 3.5134 -0.6758 42 1 7.6617 1.7292 1.6378 43 1 9.0149 2.8865 1.6475 44 1 9.8448 0.5876 1.2789 45 1 10.1205 1.5897 -0.1660 46 1 10.3726 -0.7366 -1.0127 47 1 11.6150 -3.5869 -2.2208 48 1 8.6684 1.2577 -2.2173 49 1 7.2326 0.2090 -2.0899 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000492356.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:40 Heat of formation + Delta-G solvation = -31.281272 kcal Electronic energy + Delta-G solvation = -30890.573031 eV Core-core repulsion = 26817.681271 eV Total energy + Delta-G solvation = -4072.891759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.13753 -39.89157 -38.38956 -37.23809 -35.07202 -34.50475 -33.10976 -32.47876 -31.49358 -30.99992 -29.84823 -28.23992 -25.73202 -24.99738 -24.04738 -23.40500 -22.46841 -21.90530 -20.44337 -20.40383 -19.22412 -17.79589 -17.42967 -17.24628 -17.13124 -16.24165 -15.83465 -15.34839 -15.18388 -14.94624 -14.48733 -14.41149 -14.24030 -13.99373 -13.83057 -13.66848 -13.42477 -13.40693 -12.87449 -12.74056 -12.56691 -12.45661 -12.32200 -12.08136 -12.00934 -11.78741 -11.40394 -11.35418 -11.10263 -10.87093 -10.77038 -10.65590 -10.56773 -10.28323 -9.98341 -9.90222 -9.84378 -9.66218 -9.12365 -9.01743 -8.43909 -8.31979 -7.05604 -5.83380 -3.13572 0.81343 1.11569 2.36791 2.71541 2.83990 3.12115 3.41673 3.46338 3.47108 3.60457 4.36498 4.44443 4.53620 4.67549 4.80174 4.82420 4.86880 4.91542 5.03549 5.09524 5.21859 5.23678 5.27428 5.35988 5.42949 5.50706 5.57894 5.59028 5.69705 5.71623 5.75388 5.84452 5.96042 5.98416 6.00698 6.04523 6.11404 6.16579 6.21740 6.29332 6.29869 6.42695 6.65659 6.74703 6.76583 6.93641 7.12396 7.55760 7.64962 7.86433 8.25028 8.34768 9.46356 10.00135 10.35259 11.38745 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.003371 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.871731 B = 8303.234731 C =10463.160753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.146 4.146 3 C 0.518 3.482 4 O -0.524 6.524 5 N -0.665 5.665 6 C 0.193 3.807 7 C -0.131 4.131 8 C -0.086 4.086 9 C -0.142 4.142 10 C -0.073 4.073 11 C -0.151 4.151 12 C 0.552 3.448 13 O -0.534 6.534 14 N -0.596 5.596 15 C 0.097 3.903 16 C -0.129 4.129 17 C -0.127 4.127 18 C 0.170 3.830 19 H 0.050 0.950 20 N -0.718 5.718 21 C -0.246 4.246 22 H 0.071 0.929 23 C -0.009 4.009 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.285 1.285 29 C 0.091 3.909 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.416 0.584 36 H 0.147 0.853 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.386 0.614 47 H 0.257 0.743 48 H 0.063 0.937 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.446 16.298 8.240 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.186 4.186 3 C 0.307 3.693 4 O -0.400 6.400 5 N -0.309 5.309 6 C 0.096 3.904 7 C -0.151 4.151 8 C -0.104 4.104 9 C -0.161 4.161 10 C -0.092 4.092 11 C -0.157 4.157 12 C 0.339 3.661 13 O -0.411 6.411 14 N -0.329 5.329 15 C -0.026 4.026 16 C -0.168 4.168 17 C -0.165 4.165 18 C 0.058 3.942 19 H 0.068 0.932 20 N -0.358 5.358 21 C -0.377 4.377 22 H 0.089 0.911 23 C -0.205 4.205 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.212 1.212 29 C -0.033 4.033 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.253 0.747 36 H 0.164 0.836 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.220 0.780 47 H 0.067 0.933 48 H 0.081 0.919 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.386 16.250 7.762 23.049 hybrid contribution 0.565 -1.196 -0.446 1.396 sum -13.822 15.054 7.316 21.707 Atomic orbital electron populations 1.21533 0.92615 1.01907 1.03295 1.21672 0.98849 0.92767 1.05271 1.21011 0.81178 0.92535 0.74551 1.90660 1.55106 1.46283 1.47949 1.43471 1.08450 1.07123 1.71834 1.17608 0.92638 0.84973 0.95186 1.21323 1.01295 0.91728 1.00757 1.21192 0.95548 0.96213 0.97481 1.21046 0.95568 0.99169 1.00313 1.21112 0.99428 0.90747 0.97940 1.19801 0.97299 0.94882 1.03699 1.18246 0.81838 0.84222 0.81802 1.90821 1.70429 1.45462 1.34398 1.48269 1.09577 1.27769 1.47269 1.22009 0.97301 0.91700 0.91541 1.21878 0.99417 0.98303 0.97172 1.21838 0.98101 0.96494 1.00087 1.20474 0.92931 0.88677 0.92070 0.93243 1.42368 1.07223 1.09204 1.77010 1.19203 0.93435 0.88855 1.36169 0.91141 1.24745 0.95522 0.98502 1.01730 1.69642 1.03069 1.33730 1.51465 0.86275 0.77727 0.83937 0.78314 1.21099 1.21638 1.21185 1.22861 0.94936 0.86693 0.98810 0.91892 0.91756 0.91983 0.88010 0.88392 0.74738 0.83559 0.85410 0.85392 0.85038 0.89407 0.91256 0.91705 0.90938 0.91376 0.91985 0.78028 0.93345 0.91877 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.20 37.16 0.34 -0.82 16 2 C -0.15 -1.32 6.42 -27.89 -0.18 -1.50 16 3 C 0.52 6.33 7.68 -10.99 -0.08 6.25 16 4 O -0.52 -7.61 13.26 5.56 0.07 -7.53 16 5 N -0.67 -8.30 4.79 -9.69 -0.05 -8.35 16 6 C 0.19 2.51 6.34 -83.48 -0.53 1.98 16 7 C -0.13 -1.54 8.70 -39.44 -0.34 -1.88 16 8 C -0.09 -0.80 10.03 -39.54 -0.40 -1.20 16 9 C -0.14 -1.25 10.02 -39.62 -0.40 -1.65 16 10 C -0.07 -0.76 7.41 -39.20 -0.29 -1.05 16 11 C -0.15 -1.98 4.91 -104.81 -0.52 -2.49 16 12 C 0.55 8.66 6.45 -12.48 -0.08 8.58 16 13 O -0.53 -10.34 15.90 5.28 0.08 -10.26 16 14 N -0.60 -8.75 2.97 -174.00 -0.52 -9.27 16 15 C 0.10 1.08 5.48 -3.71 -0.02 1.06 16 16 C -0.13 -1.46 6.08 -26.61 -0.16 -1.63 16 17 C -0.13 -1.89 5.35 -26.69 -0.14 -2.03 16 18 C 0.17 3.19 2.92 -67.81 -0.20 2.99 16 19 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 20 N -0.72 -17.21 5.12 -53.30 -0.27 -17.48 16 21 C -0.25 -6.64 9.93 -15.06 -0.15 -6.79 16 22 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 24 N -0.93 -27.48 13.06 55.49 0.72 -26.75 16 25 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 C 0.09 1.65 6.01 -3.71 -0.02 1.63 16 30 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.42 4.98 7.92 -40.82 -0.32 4.65 16 36 H 0.15 1.79 6.03 -52.49 -0.32 1.48 16 37 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.13 1.17 7.31 -52.49 -0.38 0.79 16 40 H 0.09 0.84 4.72 -51.93 -0.25 0.59 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.39 9.80 7.80 -40.82 -0.32 9.48 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.09 1.92 7.02 -51.93 -0.36 1.56 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -33.25 395.02 -9.70 -42.95 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -7.41 Total: 12.52 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -3.26 Total: 1.12 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.11 Total: -61.85 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.16 Total: -17.79 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.25 -9.70 -42.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000492356.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.666 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds