Wall clock time and date at job start Wed Apr 1 2020 04:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46991 * 2 1 4 4 O 1.42905 * 109.46891 * 119.99634 * 2 1 3 5 5 C 1.35918 * 116.99928 * 155.83040 * 4 2 1 6 6 C 1.38845 * 120.40846 * 177.31832 * 5 4 2 7 7 N 1.31881 * 121.00397 * 179.97438 * 6 5 4 8 8 C 1.31687 * 121.94193 * 359.69817 * 7 6 5 9 9 C 1.39524 * 120.68395 * 0.58250 * 8 7 6 10 10 C 1.47860 * 120.52856 * 179.70107 * 9 8 7 11 11 O 1.21553 * 119.99939 * 179.72775 * 10 9 8 12 12 N 1.34778 * 119.99663 * 359.73296 * 10 9 8 13 13 C 1.46504 * 119.99539 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.46868 * 179.97438 * 13 12 10 15 15 C 1.29446 * 117.69789 * 94.99735 * 14 13 12 16 16 C 1.50320 * 123.65257 * 181.14179 * 15 14 13 17 17 N 1.47125 * 109.10573 * 348.53768 * 16 15 14 18 18 C 1.36941 * 121.53707 * 223.16103 * 17 16 15 19 19 H 1.08004 * 120.00129 * 152.47010 * 18 17 16 20 20 C 1.38812 * 119.99979 * 332.47418 * 18 17 16 21 21 N 1.31622 * 120.00056 * 349.73254 * 20 18 17 22 22 Si 1.86793 * 120.00034 * 169.73578 * 20 18 17 23 23 H 1.48503 * 109.47146 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47367 * 119.99486 * 22 20 18 25 25 H 1.48505 * 109.47109 * 239.99701 * 22 20 18 26 26 C 1.47340 * 117.08922 * 43.38133 * 17 16 15 27 27 C 1.49971 * 117.68993 * 275.02011 * 14 13 12 28 28 C 1.38846 * 120.40443 * 357.28771 * 5 4 2 29 29 H 1.08996 * 109.47011 * 300.00218 * 1 2 3 30 30 H 1.09004 * 109.46519 * 60.00462 * 1 2 3 31 31 H 1.08996 * 109.46955 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47467 * 239.99987 * 2 1 3 33 33 H 1.08997 * 109.47102 * 299.99538 * 3 2 1 34 34 H 1.09004 * 109.47126 * 60.00194 * 3 2 1 35 35 H 1.09002 * 109.47057 * 179.97438 * 3 2 1 36 36 H 1.08001 * 119.49901 * 359.94525 * 6 5 4 37 37 H 1.07996 * 119.65704 * 180.31846 * 8 7 6 38 38 H 0.96997 * 120.00087 * 359.97438 * 12 10 9 39 39 H 1.08994 * 109.47428 * 60.00069 * 13 12 10 40 40 H 1.09002 * 109.47127 * 299.99264 * 13 12 10 41 41 H 1.07998 * 118.17422 * 0.85665 * 15 14 13 42 42 H 1.09001 * 109.52688 * 108.64486 * 16 15 14 43 43 H 1.09008 * 109.52201 * 228.83420 * 16 15 14 44 44 H 0.96994 * 120.00290 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.77925 * 178.40493 * 26 17 16 46 46 H 1.08994 * 109.77869 * 57.58961 * 26 17 16 47 47 H 1.09000 * 109.31377 * 281.28775 * 27 14 13 48 48 H 1.08999 * 109.31742 * 40.71454 * 27 14 13 49 49 H 1.07999 * 120.88378 * 0.04551 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2537 -1.2098 1.1039 6 6 3.8084 -1.8313 2.2147 7 7 5.0174 -2.3559 2.1665 8 6 5.7486 -2.3217 1.0718 9 6 5.2678 -1.7107 -0.0868 10 6 6.0944 -1.6685 -1.3120 11 8 5.6640 -1.1381 -2.3175 12 7 7.3249 -2.2184 -1.3140 13 6 8.1440 -2.1761 -2.5279 14 6 9.4644 -2.8540 -2.2667 15 6 9.5746 -4.1022 -2.5915 16 6 10.8196 -4.9143 -2.3682 17 7 11.9230 -4.0131 -2.0009 18 6 13.1761 -4.1612 -2.5329 19 1 13.8274 -3.3048 -2.6276 20 6 13.6094 -5.4121 -2.9507 21 7 12.9062 -6.4848 -2.6549 22 14 15.1903 -5.5732 -3.9324 23 1 15.7885 -4.2286 -4.1315 24 1 16.1463 -6.4362 -3.1933 25 1 14.8926 -6.1826 -5.2536 26 6 11.6228 -2.9455 -1.0308 27 6 10.5580 -2.0350 -1.6483 28 6 3.9886 -1.1432 -0.0723 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4425 0.0005 36 1 3.2414 -1.8855 3.1322 37 1 6.7323 -2.7675 1.0721 38 1 7.6684 -2.6414 -0.5116 39 1 8.3188 -1.1385 -2.8124 40 1 7.6240 -2.6917 -3.3353 41 1 8.7230 -4.5884 -3.0442 42 1 10.6478 -5.6313 -1.5653 43 1 11.0766 -5.4465 -3.2842 44 1 13.2091 -7.3589 -2.9464 45 1 12.5253 -2.3703 -0.8244 46 1 11.2437 -3.3825 -0.1071 47 1 11.0178 -1.4105 -2.4143 48 1 10.1356 -1.3965 -0.8724 49 1 3.5839 -0.6661 -0.9525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001038289.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:42 Heat of formation + Delta-G solvation = -1.133618 kcal Electronic energy + Delta-G solvation = -29312.140935 eV Core-core repulsion = 25240.556476 eV Total energy + Delta-G solvation = -4071.584459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.28963 -39.77694 -38.66483 -37.76011 -35.08770 -33.84387 -33.10885 -32.58357 -31.09403 -30.41700 -29.73548 -27.80421 -27.17323 -25.14031 -24.29309 -23.78353 -22.75321 -21.57246 -21.21522 -20.84678 -19.12989 -17.71120 -17.34893 -17.21803 -17.03391 -16.03517 -15.77746 -15.70658 -15.36935 -15.02772 -14.86903 -14.48835 -14.20482 -13.92852 -13.87087 -13.59688 -13.48489 -13.34127 -13.06820 -12.94611 -12.81251 -12.65843 -12.38181 -12.30176 -12.08783 -11.61126 -11.54613 -11.41544 -11.23409 -10.92722 -10.80706 -10.64284 -10.39187 -10.31852 -10.13268 -9.88592 -9.81128 -9.63137 -9.13509 -8.83760 -8.73380 -8.12509 -6.73514 -5.83483 -3.26831 0.28834 0.82990 2.46880 2.59144 2.65125 3.32200 3.35131 3.42669 3.44540 3.51276 4.01621 4.16656 4.28699 4.35473 4.43847 4.45543 4.57393 4.60516 4.63293 4.98959 5.05011 5.08753 5.20770 5.24303 5.26783 5.29348 5.37766 5.48803 5.52914 5.58418 5.64276 5.67190 5.75448 5.86802 5.92307 6.02373 6.11848 6.29482 6.31590 6.47317 6.70250 6.77797 6.83569 7.11611 7.21026 7.26934 7.40767 7.49588 7.69700 7.78140 8.02299 8.36580 9.16319 9.77442 10.37289 11.26930 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027838 B = 0.001831 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.570939 B =15292.291902 C =15663.071273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 C -0.180 4.180 4 O -0.302 6.302 5 C 0.076 3.924 6 C 0.094 3.906 7 N -0.446 5.446 8 C 0.095 3.905 9 C -0.141 4.141 10 C 0.558 3.442 11 O -0.539 6.539 12 N -0.710 5.710 13 C 0.157 3.843 14 C -0.170 4.170 15 C -0.121 4.121 16 C 0.193 3.807 17 N -0.595 5.595 18 C -0.246 4.246 19 H 0.068 0.932 20 C 0.001 3.999 21 N -0.911 5.911 22 Si 0.906 3.094 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.143 3.857 27 C -0.090 4.090 28 C -0.113 4.113 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.168 0.832 37 H 0.164 0.836 38 H 0.402 0.598 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.043 0.957 43 H 0.093 0.907 44 H 0.254 0.746 45 H 0.057 0.943 46 H 0.023 0.977 47 H 0.064 0.936 48 H 0.053 0.947 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.301 12.253 7.234 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 C -0.238 4.238 4 O -0.214 6.214 5 C 0.028 3.972 6 C -0.065 4.065 7 N -0.154 5.154 8 C -0.063 4.063 9 C -0.146 4.146 10 C 0.344 3.656 11 O -0.418 6.418 12 N -0.361 5.361 13 C 0.035 3.965 14 C -0.170 4.170 15 C -0.141 4.141 16 C 0.068 3.932 17 N -0.318 5.318 18 C -0.376 4.376 19 H 0.086 0.914 20 C -0.197 4.197 21 N -0.556 5.556 22 Si 0.736 3.264 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.216 1.216 26 C 0.016 3.984 27 C -0.129 4.129 28 C -0.140 4.140 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.185 0.815 37 H 0.181 0.819 38 H 0.238 0.762 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.061 0.939 43 H 0.111 0.889 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.041 0.959 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -23.324 12.079 7.329 27.270 hybrid contribution 0.653 0.051 -1.205 1.372 sum -22.671 12.130 6.124 26.431 Atomic orbital electron populations 1.21848 0.91906 1.03377 1.03311 1.22580 0.95829 0.92797 0.87292 1.22367 1.02257 0.95660 1.03466 1.86166 1.27381 1.68319 1.39570 1.20050 0.86193 0.96036 0.94875 1.22446 0.91701 0.95204 0.97102 1.67767 1.04850 1.15499 1.27261 1.22942 0.99784 0.96204 0.87411 1.20910 0.95732 1.02106 0.95895 1.18034 0.81599 0.78807 0.87200 1.90770 1.72089 1.44813 1.34099 1.46138 1.15565 1.58122 1.16280 1.20528 0.89068 1.01026 0.85853 1.20476 0.94435 0.95786 1.06336 1.23336 1.00356 0.95374 0.95064 1.19795 0.82437 0.90210 1.00714 1.44123 1.06987 1.33400 1.47273 1.19212 0.91037 0.92598 1.34734 0.91417 1.25108 0.98172 0.95354 1.01096 1.69966 1.39632 0.97521 1.48444 0.86153 0.83014 0.77663 0.79539 1.20271 1.21649 1.21602 1.20971 0.95565 0.90411 0.91430 1.20762 0.95482 0.97631 0.99062 1.21848 0.93879 1.00091 0.98187 0.91281 0.90235 0.91488 0.90516 0.90585 0.91219 0.91883 0.81453 0.81892 0.76186 0.91273 0.91338 0.88760 0.93905 0.88907 0.93590 0.92412 0.95865 0.91738 0.92879 0.82905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.56 37.16 0.36 -0.36 16 2 C 0.07 0.48 2.87 -26.73 -0.08 0.40 16 3 C -0.18 -1.11 9.29 37.16 0.35 -0.76 16 4 O -0.30 -2.61 9.81 -19.48 -0.19 -2.80 16 5 C 0.08 0.73 6.58 -39.13 -0.26 0.47 16 6 C 0.09 0.90 11.13 -17.31 -0.19 0.70 16 7 N -0.45 -4.85 10.34 -12.80 -0.13 -4.98 16 8 C 0.09 0.99 10.71 -17.13 -0.18 0.81 16 9 C -0.14 -1.60 5.89 -104.84 -0.62 -2.22 16 10 C 0.56 7.44 7.78 -12.32 -0.10 7.34 16 11 O -0.54 -8.80 16.42 5.32 0.09 -8.71 16 12 N -0.71 -8.85 5.50 -62.42 -0.34 -9.19 16 13 C 0.16 2.24 5.66 -5.19 -0.03 2.21 16 14 C -0.17 -2.77 5.22 -100.99 -0.53 -3.29 16 15 C -0.12 -2.19 9.47 -35.78 -0.34 -2.53 16 16 C 0.19 4.43 5.19 -5.04 -0.03 4.40 16 17 N -0.59 -14.44 3.00 -173.57 -0.52 -14.96 16 18 C -0.25 -6.61 9.70 -15.06 -0.15 -6.76 16 19 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 20 C 0.00 0.02 5.11 -17.43 -0.09 -0.07 16 21 N -0.91 -25.76 11.03 55.49 0.61 -25.15 16 22 Si 0.91 21.43 29.57 -169.99 -5.03 16.40 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.14 2.84 6.57 -3.53 -0.02 2.82 16 27 C -0.09 -1.50 5.95 -28.18 -0.17 -1.67 16 28 C -0.11 -1.19 8.02 -38.71 -0.31 -1.50 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.53 6.00 -51.93 -0.31 0.22 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.47 7.44 -51.93 -0.39 0.08 16 36 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 37 H 0.16 1.40 6.42 -52.49 -0.34 1.06 16 38 H 0.40 4.33 6.53 -40.82 -0.27 4.06 16 39 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 40 H 0.07 1.00 7.78 -51.93 -0.40 0.60 16 41 H 0.09 1.54 7.73 -52.49 -0.41 1.13 16 42 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.09 2.39 6.51 -51.92 -0.34 2.05 16 44 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.15 1.54 5.53 -52.49 -0.29 1.25 16 LS Contribution 399.20 15.07 6.02 6.02 Total: -1.00 -31.39 399.20 -9.23 -40.62 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.35 Total: 2.77 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.38 Total: -0.01 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.38 Total: -54.28 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.10 Total: -11.52 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.39 -9.23 -40.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001038289.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.489 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds