Wall clock time and date at job start Wed Apr 1 2020 04:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46991 * 2 1 4 4 O 1.42905 * 109.46891 * 119.99634 * 2 1 3 5 5 C 1.35918 * 116.99928 * 155.83040 * 4 2 1 6 6 C 1.38845 * 120.40846 * 177.31832 * 5 4 2 7 7 N 1.31881 * 121.00397 * 179.97438 * 6 5 4 8 8 C 1.31687 * 121.94193 * 359.69817 * 7 6 5 9 9 C 1.39524 * 120.68395 * 0.58250 * 8 7 6 10 10 C 1.47860 * 120.52856 * 179.70107 * 9 8 7 11 11 O 1.21553 * 119.99939 * 179.72775 * 10 9 8 12 12 N 1.34778 * 119.99663 * 359.73296 * 10 9 8 13 13 C 1.46504 * 119.99539 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.46868 * 179.97438 * 13 12 10 15 15 C 1.29446 * 117.69789 * 94.99735 * 14 13 12 16 16 C 1.50320 * 123.65257 * 181.14179 * 15 14 13 17 17 N 1.47125 * 109.10573 * 348.53768 * 16 15 14 18 18 C 1.36941 * 121.53707 * 223.16103 * 17 16 15 19 19 H 1.08004 * 120.00129 * 152.47010 * 18 17 16 20 20 C 1.38812 * 119.99979 * 332.47418 * 18 17 16 21 21 N 1.31622 * 120.00056 * 349.73254 * 20 18 17 22 22 Si 1.86793 * 120.00034 * 169.73578 * 20 18 17 23 23 H 1.48503 * 109.47146 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47367 * 119.99486 * 22 20 18 25 25 H 1.48505 * 109.47109 * 239.99701 * 22 20 18 26 26 C 1.47340 * 117.08922 * 43.38133 * 17 16 15 27 27 C 1.49971 * 117.68993 * 275.02011 * 14 13 12 28 28 C 1.38846 * 120.40443 * 357.28771 * 5 4 2 29 29 H 1.08996 * 109.47011 * 300.00218 * 1 2 3 30 30 H 1.09004 * 109.46519 * 60.00462 * 1 2 3 31 31 H 1.08996 * 109.46955 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47467 * 239.99987 * 2 1 3 33 33 H 1.08997 * 109.47102 * 299.99538 * 3 2 1 34 34 H 1.09004 * 109.47126 * 60.00194 * 3 2 1 35 35 H 1.09002 * 109.47057 * 179.97438 * 3 2 1 36 36 H 1.08001 * 119.49901 * 359.94525 * 6 5 4 37 37 H 1.07996 * 119.65704 * 180.31846 * 8 7 6 38 38 H 0.96997 * 120.00087 * 359.97438 * 12 10 9 39 39 H 1.08994 * 109.47428 * 60.00069 * 13 12 10 40 40 H 1.09002 * 109.47127 * 299.99264 * 13 12 10 41 41 H 1.07998 * 118.17422 * 0.85665 * 15 14 13 42 42 H 1.09001 * 109.52688 * 108.64486 * 16 15 14 43 43 H 1.09008 * 109.52201 * 228.83420 * 16 15 14 44 44 H 0.96994 * 120.00290 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.77925 * 178.40493 * 26 17 16 46 46 H 1.08994 * 109.77869 * 57.58961 * 26 17 16 47 47 H 1.09000 * 109.31377 * 281.28775 * 27 14 13 48 48 H 1.08999 * 109.31742 * 40.71454 * 27 14 13 49 49 H 1.07999 * 120.88378 * 0.04551 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2537 -1.2098 1.1039 6 6 3.8084 -1.8313 2.2147 7 7 5.0174 -2.3559 2.1665 8 6 5.7486 -2.3217 1.0718 9 6 5.2678 -1.7107 -0.0868 10 6 6.0944 -1.6685 -1.3120 11 8 5.6640 -1.1381 -2.3175 12 7 7.3249 -2.2184 -1.3140 13 6 8.1440 -2.1761 -2.5279 14 6 9.4644 -2.8540 -2.2667 15 6 9.5746 -4.1022 -2.5915 16 6 10.8196 -4.9143 -2.3682 17 7 11.9230 -4.0131 -2.0009 18 6 13.1761 -4.1612 -2.5329 19 1 13.8274 -3.3048 -2.6276 20 6 13.6094 -5.4121 -2.9507 21 7 12.9062 -6.4848 -2.6549 22 14 15.1903 -5.5732 -3.9324 23 1 15.7885 -4.2286 -4.1315 24 1 16.1463 -6.4362 -3.1933 25 1 14.8926 -6.1826 -5.2536 26 6 11.6228 -2.9455 -1.0308 27 6 10.5580 -2.0350 -1.6483 28 6 3.9886 -1.1432 -0.0723 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4425 0.0005 36 1 3.2414 -1.8855 3.1322 37 1 6.7323 -2.7675 1.0721 38 1 7.6684 -2.6414 -0.5116 39 1 8.3188 -1.1385 -2.8124 40 1 7.6240 -2.6917 -3.3353 41 1 8.7230 -4.5884 -3.0442 42 1 10.6478 -5.6313 -1.5653 43 1 11.0766 -5.4465 -3.2842 44 1 13.2091 -7.3589 -2.9464 45 1 12.5253 -2.3703 -0.8244 46 1 11.2437 -3.3825 -0.1071 47 1 11.0178 -1.4105 -2.4143 48 1 10.1356 -1.3965 -0.8724 49 1 3.5839 -0.6661 -0.9525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001038289.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:41 Heat of formation + Delta-G solvation = -20.277007 kcal Electronic energy + Delta-G solvation = -29312.971054 eV Core-core repulsion = 25240.556476 eV Total energy + Delta-G solvation = -4072.414578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.07845 -40.74149 -39.53491 -39.17469 -36.49237 -34.70161 -34.31455 -33.54930 -32.62390 -31.49763 -31.19941 -28.66030 -28.22333 -26.47347 -25.12561 -25.00347 -24.30719 -22.84108 -22.23538 -21.76903 -20.01336 -19.44242 -18.20049 -18.07370 -17.85919 -17.27570 -17.01371 -16.75876 -16.69707 -16.31112 -15.78847 -15.51411 -15.36250 -15.25162 -15.14810 -14.84541 -14.62390 -14.40149 -14.03926 -13.93084 -13.63012 -13.54978 -13.33403 -13.26242 -13.13957 -12.93205 -12.92229 -12.78182 -12.62491 -12.20139 -12.08805 -12.06456 -11.75907 -11.71959 -11.62818 -11.23520 -10.97568 -10.72096 -10.66818 -10.21380 -9.66366 -9.57326 -8.69044 -7.87990 -5.33584 -0.53877 0.06174 1.14355 1.46511 1.48293 1.58213 1.69077 1.96706 2.22125 2.50773 2.68588 3.23705 3.30285 3.46537 3.62807 3.65410 3.70230 3.77539 3.83138 3.87514 3.94011 3.97432 4.10339 4.32763 4.44144 4.54570 4.62464 4.65718 4.70932 4.73296 4.76021 4.81370 4.82969 4.86127 4.87446 4.93437 5.11662 5.17466 5.20156 5.23302 5.24764 5.27142 5.40895 5.50627 5.62558 5.76836 6.11605 6.16807 6.36587 6.38219 6.72420 7.00728 7.14926 7.83522 8.38826 9.20400 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027838 B = 0.001831 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.570939 B =15292.291902 C =15663.071273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 C -0.178 4.178 4 O -0.305 6.305 5 C 0.078 3.922 6 C 0.097 3.903 7 N -0.461 5.461 8 C 0.096 3.904 9 C -0.153 4.153 10 C 0.563 3.437 11 O -0.572 6.572 12 N -0.702 5.702 13 C 0.167 3.833 14 C -0.141 4.141 15 C -0.139 4.139 16 C 0.204 3.796 17 N -0.615 5.615 18 C -0.255 4.255 19 H 0.069 0.931 20 C -0.053 4.053 21 N -0.940 5.940 22 Si 0.968 3.032 23 H -0.267 1.267 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.137 3.863 27 C -0.085 4.085 28 C -0.117 4.117 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.191 0.809 37 H 0.180 0.820 38 H 0.412 0.588 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.016 0.984 43 H 0.055 0.945 44 H 0.250 0.750 45 H 0.058 0.942 46 H 0.029 0.971 47 H 0.063 0.937 48 H 0.089 0.911 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.628 14.039 7.876 29.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.008 3.992 3 C -0.235 4.235 4 O -0.218 6.218 5 C 0.030 3.970 6 C -0.062 4.062 7 N -0.170 5.170 8 C -0.062 4.062 9 C -0.158 4.158 10 C 0.350 3.650 11 O -0.453 6.453 12 N -0.353 5.353 13 C 0.045 3.955 14 C -0.142 4.142 15 C -0.159 4.159 16 C 0.079 3.921 17 N -0.339 5.339 18 C -0.386 4.386 19 H 0.087 0.913 20 C -0.248 4.248 21 N -0.586 5.586 22 Si 0.797 3.203 23 H -0.191 1.191 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.012 3.988 27 C -0.123 4.123 28 C -0.144 4.144 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.208 0.792 37 H 0.197 0.803 38 H 0.250 0.750 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.131 0.869 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.077 0.923 46 H 0.047 0.953 47 H 0.082 0.918 48 H 0.107 0.893 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -24.657 13.890 8.000 29.409 hybrid contribution 0.987 -0.413 -1.321 1.700 sum -23.670 13.477 6.679 28.044 Atomic orbital electron populations 1.21870 0.90329 1.03598 1.04320 1.22809 0.97038 0.92845 0.86517 1.22355 1.01244 0.95480 1.04399 1.86171 1.26779 1.68306 1.40564 1.20063 0.86501 0.95899 0.94525 1.22857 0.91399 0.94051 0.97875 1.67828 1.05528 1.16200 1.27408 1.23162 1.00360 0.95695 0.86946 1.20751 0.95980 1.03642 0.95403 1.18231 0.81524 0.77945 0.87312 1.90754 1.72762 1.46365 1.35410 1.45950 1.15268 1.57996 1.16093 1.20315 0.87842 1.00864 0.86518 1.20578 0.95219 0.94839 1.03542 1.22986 0.98958 0.96053 0.97903 1.19432 0.84197 0.90350 0.98116 1.44399 1.06635 1.34422 1.48440 1.19526 0.92089 0.92622 1.34326 0.91338 1.25839 1.01181 0.95213 1.02537 1.70130 1.41101 0.97661 1.49751 0.85182 0.79574 0.77790 0.77779 1.19093 1.21891 1.21898 1.21160 0.96827 0.89759 0.91058 1.20701 0.94548 0.97181 0.99889 1.21924 0.93808 0.99973 0.98646 0.90931 0.88570 0.91664 0.90872 0.89136 0.90834 0.93385 0.79195 0.80341 0.74991 0.90748 0.91471 0.86878 0.96600 0.92636 0.94127 0.92326 0.95320 0.91812 0.89314 0.82941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.56 71.98 0.69 -0.44 16 2 C 0.06 0.77 2.87 30.60 0.09 0.85 16 3 C -0.18 -1.93 9.29 71.98 0.67 -1.27 16 4 O -0.31 -4.83 9.81 -92.63 -0.91 -5.74 16 5 C 0.08 1.39 6.58 22.56 0.15 1.54 16 6 C 0.10 1.66 11.13 84.83 0.94 2.60 16 7 N -0.46 -9.21 10.34 -194.40 -2.01 -11.22 16 8 C 0.10 1.84 10.71 85.02 0.91 2.75 16 9 C -0.15 -3.25 5.89 -20.00 -0.12 -3.37 16 10 C 0.56 14.13 7.78 86.79 0.68 14.80 16 11 O -0.57 -18.04 16.42 -3.88 -0.06 -18.11 16 12 N -0.70 -15.90 5.50 -469.68 -2.58 -18.49 16 13 C 0.17 4.36 5.66 85.63 0.48 4.84 16 14 C -0.14 -4.33 5.22 -15.13 -0.08 -4.41 16 15 C -0.14 -4.97 9.47 27.11 0.26 -4.71 16 16 C 0.20 9.62 5.19 85.39 0.44 10.07 16 17 N -0.61 -30.14 3.00 -703.06 -2.11 -32.25 16 18 C -0.26 -13.86 9.70 84.03 0.82 -13.05 16 19 H 0.07 3.62 7.85 -2.91 -0.02 3.60 16 20 C -0.05 -2.92 5.11 84.86 0.43 -2.49 16 21 N -0.94 -54.90 11.03 21.65 0.24 -54.66 16 22 Si 0.97 44.68 29.57 68.60 2.03 46.71 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 C 0.14 5.31 6.57 86.26 0.57 5.88 16 27 C -0.08 -2.60 5.95 29.66 0.18 -2.43 16 28 C -0.12 -2.33 8.02 22.83 0.18 -2.14 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.94 6.00 -2.39 -0.01 0.92 16 33 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.67 7.44 -2.39 -0.02 0.65 16 36 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.18 2.66 6.42 -2.91 -0.02 2.65 16 38 H 0.41 7.79 6.53 -92.71 -0.60 7.19 16 39 H 0.07 1.93 8.11 -2.39 -0.02 1.92 16 40 H 0.07 1.83 7.78 -2.39 -0.02 1.81 16 41 H 0.11 3.60 7.73 -2.91 -0.02 3.58 16 42 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.06 2.99 6.51 -2.38 -0.02 2.98 16 44 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 45 H 0.06 2.23 7.96 -2.39 -0.02 2.21 16 46 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.15 3.00 5.53 -2.91 -0.02 2.98 16 Total: -1.00 -68.51 399.20 2.24 -66.27 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.36 Total: 18.44 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 7.29 Total: 9.04 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -6.47 Total: -116.62 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.97 Total: -23.85 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -68.51 2.24 -66.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001038289.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.998 kcal (2) G-P(sol) polarization free energy of solvation -68.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds