Wall clock time and date at job start Wed Apr 1 2020 04:42:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.53000 * 109.46823 * 2 1
4 4 O 1.42898 * 109.46799 * 120.00310 * 2 1 3
5 5 C 1.35682 * 117.00124 * 90.00202 * 4 2 1
6 6 C 1.38898 * 119.62063 * 179.97438 * 5 4 2
7 7 C 1.39569 * 118.94179 * 179.97438 * 6 5 4
8 8 C 1.48165 * 120.88967 * 179.97438 * 7 6 5
9 9 O 1.21512 * 119.99920 * 0.02562 * 8 7 6
10 10 N 1.34777 * 119.99719 * 179.97438 * 8 7 6
11 11 C 1.46510 * 119.99531 * 179.72785 * 10 8 7
12 12 C 1.50701 * 109.46649 * 180.27838 * 11 10 8
13 13 C 1.29447 * 117.69678 * 95.00465 * 12 11 10
14 14 C 1.50319 * 123.65536 * 180.85384 * 13 12 11
15 15 N 1.47013 * 109.16349 * 349.02306 * 14 13 12
16 16 C 1.36943 * 121.37171 * 222.97160 * 15 14 13
17 17 H 1.07991 * 120.00016 * 155.96805 * 16 15 14
18 18 C 1.38813 * 119.99580 * 335.96044 * 16 15 14
19 19 N 1.31618 * 120.00505 * 344.52493 * 18 16 15
20 20 Si 1.86800 * 119.99584 * 164.52960 * 18 16 15
21 21 H 1.48499 * 109.47360 * 59.99547 * 20 18 16
22 22 H 1.48505 * 109.47373 * 180.02562 * 20 18 16
23 23 H 1.48507 * 109.47003 * 300.00042 * 20 18 16
24 24 C 1.47333 * 117.25318 * 42.94171 * 15 14 13
25 25 C 1.49973 * 117.69227 * 274.73406 * 12 11 10
26 26 C 1.39969 * 118.22269 * 0.27431 * 7 6 5
27 27 C 1.37978 * 119.12703 * 359.47554 * 26 7 6
28 28 N 1.31910 * 120.97976 * 0.53693 * 27 26 7
29 29 H 1.09001 * 109.46717 * 299.99992 * 1 2 3
30 30 H 1.09003 * 109.46780 * 59.99854 * 1 2 3
31 31 H 1.08993 * 109.47104 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.46717 * 240.00007 * 2 1 3
33 33 H 1.09004 * 109.46385 * 180.02562 * 3 2 1
34 34 H 1.08994 * 109.47441 * 299.99537 * 3 2 1
35 35 H 1.09001 * 109.47468 * 60.00467 * 3 2 1
36 36 H 1.07992 * 120.53035 * 359.97438 * 6 5 4
37 37 H 0.96998 * 120.00331 * 0.02562 * 10 8 7
38 38 H 1.08993 * 109.47052 * 300.27484 * 11 10 8
39 39 H 1.08998 * 109.47190 * 60.27998 * 11 10 8
40 40 H 1.07999 * 118.17423 * 0.87250 * 13 12 11
41 41 H 1.09003 * 109.52654 * 108.92214 * 14 13 12
42 42 H 1.08993 * 109.52762 * 229.11080 * 14 13 12
43 43 H 0.97001 * 119.99949 * 179.97438 * 19 18 16
44 44 H 1.08999 * 109.77642 * 57.81197 * 24 15 14
45 45 H 1.08993 * 109.78173 * 178.62304 * 24 15 14
46 46 H 1.08998 * 109.31837 * 281.29732 * 25 12 11
47 47 H 1.08999 * 109.31348 * 40.72281 * 25 12 11
48 48 H 1.08001 * 120.43841 * 179.72758 * 26 7 6
49 49 H 1.08007 * 119.51042 * 180.27240 * 27 26 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 2.0063 -0.6737 1.1667
5 6 2.2117 -2.0110 1.0652
6 6 2.6746 -2.7201 2.1662
7 6 2.8804 -4.0953 2.0461
8 6 3.3737 -4.8936 3.1927
9 8 3.6043 -4.3519 4.2557
10 7 3.5656 -6.2207 3.0569
11 6 4.0591 -7.0090 4.1889
12 6 4.1921 -8.4522 3.7759
13 6 5.3524 -8.8573 3.3695
14 6 5.6307 -10.2610 2.9094
15 7 4.4826 -11.1155 3.2455
16 6 4.6559 -12.3688 3.7694
17 1 3.8712 -12.8217 4.3571
18 6 5.8403 -13.0572 3.5448
19 7 6.6637 -12.6590 2.5984
20 14 6.2653 -14.5488 4.5859
21 1 5.2125 -15.5832 4.4220
22 1 7.5736 -15.1000 4.1503
23 1 6.3480 -14.1487 6.0137
24 6 3.1378 -10.5676 2.9961
25 6 2.9722 -9.3195 3.8705
26 6 2.6144 -4.6991 0.8116
27 6 2.1517 -3.9219 -0.2303
28 7 1.9688 -2.6242 -0.0802
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 3.1300 1.4424 -0.0005
34 1 1.6768 1.9563 -0.8900
35 1 1.6767 1.9564 0.8900
36 1 2.8722 -2.2154 3.1002
37 1 3.3811 -6.6531 2.2084
38 1 5.0321 -6.6289 4.4996
39 1 3.3568 -6.9319 5.0190
40 1 6.1661 -8.1472 3.3608
41 1 5.7854 -10.2668 1.8304
42 1 6.5235 -10.6377 3.4083
43 1 7.4914 -13.1398 2.4418
44 1 3.0374 -10.3014 1.9439
45 1 2.3829 -11.3067 3.2640
46 1 2.8222 -9.6189 4.9078
47 1 2.1025 -8.7567 3.5313
48 1 2.7654 -5.7600 0.6777
49 1 1.9403 -4.3821 -1.1842
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001001359334.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:42:41
Heat of formation + Delta-G solvation = 0.087403 kcal
Electronic energy + Delta-G solvation = -29070.032978 eV
Core-core repulsion = 24998.501467 eV
Total energy + Delta-G solvation = -4071.531511 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.29 seconds
Orbital eigenvalues (eV)
-41.18105 -39.79002 -38.38759 -37.75600 -35.10855 -33.70773 -33.28464 -32.63819
-30.96492 -30.41242 -29.76913 -27.67548 -27.26501 -25.27189 -23.99434 -23.61539
-22.81184 -22.07590 -21.14045 -20.59805 -19.12164 -17.72629 -17.51896 -16.88940
-16.17671 -16.08295 -15.80411 -15.65828 -15.33049 -15.01492 -14.76529 -14.64185
-14.19595 -14.10595 -13.89318 -13.69979 -13.52085 -13.42397 -13.02372 -12.74162
-12.71352 -12.39651 -12.31736 -12.22910 -12.10829 -11.62832 -11.43800 -11.35067
-11.18559 -10.95118 -10.76822 -10.53524 -10.40425 -10.35189 -10.23647 -9.90523
-9.87767 -9.65922 -9.11748 -8.87262 -8.73282 -8.13879 -6.80228 -5.84607
-3.23620 0.40056 0.80268 2.37945 2.66017 2.69688 3.35284 3.36464
3.42123 3.43421 3.53227 3.90078 4.34456 4.45550 4.45880 4.57087
4.61895 4.67548 4.71150 4.85682 5.06242 5.14187 5.27914 5.28505
5.34169 5.34412 5.37087 5.41775 5.46360 5.52590 5.70140 5.72116
5.74410 5.78106 5.85936 5.99759 6.00455 6.09741 6.26098 6.30733
6.44729 6.66832 6.80517 6.91347 7.09169 7.18493 7.24630 7.39629
7.44663 7.66827 7.76371 8.01619 8.32996 9.14451 9.77097 10.34655
11.25841
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.030710 B = 0.001728 C = 0.001701
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 911.526915 B =16203.427413 C =16456.269934
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.081 3.919
3 C -0.151 4.151
4 O -0.300 6.300
5 C 0.322 3.678
6 C -0.135 4.135
7 C -0.049 4.049
8 C 0.554 3.446
9 O -0.531 6.531
10 N -0.708 5.708
11 C 0.157 3.843
12 C -0.169 4.169
13 C -0.121 4.121
14 C 0.193 3.807
15 N -0.595 5.595
16 C -0.248 4.248
17 H 0.069 0.931
18 C 0.000 4.000
19 N -0.910 5.910
20 Si 0.905 3.095
21 H -0.283 1.283
22 H -0.290 1.290
23 H -0.284 1.284
24 C 0.144 3.856
25 C -0.090 4.090
26 C -0.182 4.182
27 C 0.140 3.860
28 N -0.528 5.528
29 H 0.062 0.938
30 H 0.071 0.929
31 H 0.061 0.939
32 H 0.090 0.910
33 H 0.063 0.937
34 H 0.077 0.923
35 H 0.065 0.935
36 H 0.153 0.847
37 H 0.403 0.597
38 H 0.069 0.931
39 H 0.070 0.930
40 H 0.095 0.905
41 H 0.042 0.958
42 H 0.094 0.906
43 H 0.255 0.745
44 H 0.023 0.977
45 H 0.057 0.943
46 H 0.065 0.935
47 H 0.052 0.948
48 H 0.144 0.856
49 H 0.167 0.833
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.180 23.296 -7.357 26.466
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.025 3.975
3 C -0.209 4.209
4 O -0.207 6.207
5 C 0.143 3.857
6 C -0.157 4.157
7 C -0.059 4.059
8 C 0.339 3.661
9 O -0.409 6.409
10 N -0.360 5.360
11 C 0.035 3.965
12 C -0.170 4.170
13 C -0.142 4.142
14 C 0.068 3.932
15 N -0.318 5.318
16 C -0.377 4.377
17 H 0.086 0.914
18 C -0.198 4.198
19 N -0.555 5.555
20 Si 0.735 3.265
21 H -0.209 1.209
22 H -0.216 1.216
23 H -0.211 1.211
24 C 0.017 3.983
25 C -0.129 4.129
26 C -0.203 4.203
27 C -0.016 4.016
28 N -0.253 5.253
29 H 0.081 0.919
30 H 0.090 0.910
31 H 0.080 0.920
32 H 0.108 0.892
33 H 0.083 0.917
34 H 0.096 0.904
35 H 0.084 0.916
36 H 0.171 0.829
37 H 0.239 0.761
38 H 0.087 0.913
39 H 0.088 0.912
40 H 0.113 0.887
41 H 0.060 0.940
42 H 0.112 0.888
43 H 0.065 0.935
44 H 0.041 0.959
45 H 0.076 0.924
46 H 0.084 0.916
47 H 0.071 0.929
48 H 0.162 0.838
49 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges -10.111 24.242 -7.077 27.202
hybrid contribution 0.487 -1.467 0.579 1.651
sum -9.624 22.775 -6.498 25.564
Atomic orbital electron populations
1.22222 0.94798 1.02947 1.02658 1.22378 0.94454 0.92829 0.87866
1.21915 1.02088 0.93804 1.03049 1.86321 1.80030 1.15599 1.38747
1.19630 0.91799 0.84921 0.89387 1.21124 1.02262 0.92778 0.99521
1.20185 0.97998 0.93476 0.94277 1.18108 0.78382 0.82310 0.87268
1.90787 1.51084 1.71093 1.27899 1.46113 1.66312 1.07117 1.16433
1.20544 0.99507 0.88647 0.87843 1.20485 0.97005 0.93234 1.06274
1.23320 0.95723 1.00355 0.94765 1.19777 0.92288 0.83420 0.97709
1.44114 0.99284 1.14036 1.74350 1.19142 1.01929 0.91809 1.24849
0.91375 1.24985 0.99099 0.98185 0.97545 1.69991 1.12696 1.42110
1.30700 0.86319 0.77475 0.82485 0.80192 1.20902 1.21611 1.21053
1.20989 0.88911 0.93080 0.95298 1.20797 0.93942 0.96835 1.01376
1.22218 1.02869 1.02019 0.93161 1.22393 0.92912 0.87388 0.98881
1.67141 1.20708 1.12930 1.24479 0.91930 0.91038 0.91958 0.89170
0.91748 0.90426 0.91556 0.82888 0.76147 0.91284 0.91191 0.88711
0.93999 0.88809 0.93514 0.95855 0.92422 0.91641 0.92901 0.83818
0.81568
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.17 9.53 37.16 0.35 -0.81 16
2 C 0.08 0.64 3.11 -26.73 -0.08 0.56 16
3 C -0.15 -0.89 9.56 37.16 0.36 -0.54 16
4 O -0.30 -3.16 9.76 -18.75 -0.18 -3.34 16
5 C 0.32 3.56 7.45 -17.16 -0.13 3.43 16
6 C -0.14 -1.57 9.61 -38.84 -0.37 -1.94 16
7 C -0.05 -0.55 5.91 -104.67 -0.62 -1.17 16
8 C 0.55 7.43 7.80 -12.18 -0.09 7.34 16
9 O -0.53 -8.92 16.44 5.35 0.09 -8.83 16
10 N -0.71 -8.72 5.51 -62.32 -0.34 -9.06 16
11 C 0.16 2.22 5.66 -5.19 -0.03 2.19 16
12 C -0.17 -2.73 5.22 -100.99 -0.53 -3.26 16
13 C -0.12 -2.17 9.47 -35.78 -0.34 -2.51 16
14 C 0.19 4.37 5.23 -5.10 -0.03 4.35 16
15 N -0.59 -14.28 3.01 -173.57 -0.52 -14.80 16
16 C -0.25 -6.61 9.71 -15.06 -0.15 -6.76 16
17 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16
18 C 0.00 0.00 5.01 -17.43 -0.09 -0.09 16
19 N -0.91 -25.56 11.08 55.49 0.61 -24.94 16
20 Si 0.91 21.32 29.58 -169.99 -5.03 16.29 16
21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16
22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
24 C 0.14 2.81 6.59 -3.44 -0.02 2.79 16
25 C -0.09 -1.48 5.95 -28.09 -0.17 -1.65 16
26 C -0.18 -1.59 9.61 -39.03 -0.38 -1.96 16
27 C 0.14 1.15 11.17 -17.61 -0.20 0.96 16
28 N -0.53 -5.34 8.61 -13.38 -0.12 -5.45 16
29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16
32 H 0.09 0.75 6.98 -51.93 -0.36 0.39 16
33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16
34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16
35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16
36 H 0.15 1.80 7.74 -52.49 -0.41 1.40 16
37 H 0.40 4.18 6.60 -40.82 -0.27 3.91 16
38 H 0.07 1.01 7.78 -51.93 -0.40 0.61 16
39 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16
40 H 0.09 1.53 7.73 -52.49 -0.41 1.12 16
41 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16
42 H 0.09 2.39 6.41 -51.93 -0.33 2.06 16
43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16
44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
45 H 0.06 1.11 7.96 -51.93 -0.41 0.69 16
46 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
47 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
48 H 0.14 0.95 6.53 -52.49 -0.34 0.60 16
49 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16
LS Contribution 403.40 15.07 6.08 6.08
Total: -1.00 -31.31 403.40 -9.47 -40.78
By element:
Atomic # 1 Polarization: 9.92 SS G_CDS: -7.56 Total: 2.37 kcal
Atomic # 6 Polarization: 3.43 SS G_CDS: -2.51 Total: 0.92 kcal
Atomic # 7 Polarization: -53.89 SS G_CDS: -0.37 Total: -54.26 kcal
Atomic # 8 Polarization: -12.08 SS G_CDS: -0.09 Total: -12.17 kcal
Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal
Total LS contribution 6.08 Total: 6.08 kcal
Total: -31.31 -9.47 -40.78 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001001359334.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.865 kcal
(2) G-P(sol) polarization free energy of solvation -31.306 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.559 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.087 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.29 seconds