Wall clock time and date at job start Wed Apr 1 2020 04:42:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.53000 * 109.46823 * 2 1
4 4 O 1.42898 * 109.46799 * 120.00310 * 2 1 3
5 5 C 1.35682 * 117.00124 * 90.00202 * 4 2 1
6 6 C 1.38898 * 119.62063 * 179.97438 * 5 4 2
7 7 C 1.39569 * 118.94179 * 179.97438 * 6 5 4
8 8 C 1.48165 * 120.88967 * 179.97438 * 7 6 5
9 9 O 1.21512 * 119.99920 * 0.02562 * 8 7 6
10 10 N 1.34777 * 119.99719 * 179.97438 * 8 7 6
11 11 C 1.46510 * 119.99531 * 179.72785 * 10 8 7
12 12 C 1.50701 * 109.46649 * 180.27838 * 11 10 8
13 13 C 1.29447 * 117.69678 * 95.00465 * 12 11 10
14 14 C 1.50319 * 123.65536 * 180.85384 * 13 12 11
15 15 N 1.47013 * 109.16349 * 349.02306 * 14 13 12
16 16 C 1.36943 * 121.37171 * 222.97160 * 15 14 13
17 17 H 1.07991 * 120.00016 * 155.96805 * 16 15 14
18 18 C 1.38813 * 119.99580 * 335.96044 * 16 15 14
19 19 N 1.31618 * 120.00505 * 344.52493 * 18 16 15
20 20 Si 1.86800 * 119.99584 * 164.52960 * 18 16 15
21 21 H 1.48499 * 109.47360 * 59.99547 * 20 18 16
22 22 H 1.48505 * 109.47373 * 180.02562 * 20 18 16
23 23 H 1.48507 * 109.47003 * 300.00042 * 20 18 16
24 24 C 1.47333 * 117.25318 * 42.94171 * 15 14 13
25 25 C 1.49973 * 117.69227 * 274.73406 * 12 11 10
26 26 C 1.39969 * 118.22269 * 0.27431 * 7 6 5
27 27 C 1.37978 * 119.12703 * 359.47554 * 26 7 6
28 28 N 1.31910 * 120.97976 * 0.53693 * 27 26 7
29 29 H 1.09001 * 109.46717 * 299.99992 * 1 2 3
30 30 H 1.09003 * 109.46780 * 59.99854 * 1 2 3
31 31 H 1.08993 * 109.47104 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.46717 * 240.00007 * 2 1 3
33 33 H 1.09004 * 109.46385 * 180.02562 * 3 2 1
34 34 H 1.08994 * 109.47441 * 299.99537 * 3 2 1
35 35 H 1.09001 * 109.47468 * 60.00467 * 3 2 1
36 36 H 1.07992 * 120.53035 * 359.97438 * 6 5 4
37 37 H 0.96998 * 120.00331 * 0.02562 * 10 8 7
38 38 H 1.08993 * 109.47052 * 300.27484 * 11 10 8
39 39 H 1.08998 * 109.47190 * 60.27998 * 11 10 8
40 40 H 1.07999 * 118.17423 * 0.87250 * 13 12 11
41 41 H 1.09003 * 109.52654 * 108.92214 * 14 13 12
42 42 H 1.08993 * 109.52762 * 229.11080 * 14 13 12
43 43 H 0.97001 * 119.99949 * 179.97438 * 19 18 16
44 44 H 1.08999 * 109.77642 * 57.81197 * 24 15 14
45 45 H 1.08993 * 109.78173 * 178.62304 * 24 15 14
46 46 H 1.08998 * 109.31837 * 281.29732 * 25 12 11
47 47 H 1.08999 * 109.31348 * 40.72281 * 25 12 11
48 48 H 1.08001 * 120.43841 * 179.72758 * 26 7 6
49 49 H 1.08007 * 119.51042 * 180.27240 * 27 26 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 2.0063 -0.6737 1.1667
5 6 2.2117 -2.0110 1.0652
6 6 2.6746 -2.7201 2.1662
7 6 2.8804 -4.0953 2.0461
8 6 3.3737 -4.8936 3.1927
9 8 3.6043 -4.3519 4.2557
10 7 3.5656 -6.2207 3.0569
11 6 4.0591 -7.0090 4.1889
12 6 4.1921 -8.4522 3.7759
13 6 5.3524 -8.8573 3.3695
14 6 5.6307 -10.2610 2.9094
15 7 4.4826 -11.1155 3.2455
16 6 4.6559 -12.3688 3.7694
17 1 3.8712 -12.8217 4.3571
18 6 5.8403 -13.0572 3.5448
19 7 6.6637 -12.6590 2.5984
20 14 6.2653 -14.5488 4.5859
21 1 5.2125 -15.5832 4.4220
22 1 7.5736 -15.1000 4.1503
23 1 6.3480 -14.1487 6.0137
24 6 3.1378 -10.5676 2.9961
25 6 2.9722 -9.3195 3.8705
26 6 2.6144 -4.6991 0.8116
27 6 2.1517 -3.9219 -0.2303
28 7 1.9688 -2.6242 -0.0802
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 3.1300 1.4424 -0.0005
34 1 1.6768 1.9563 -0.8900
35 1 1.6767 1.9564 0.8900
36 1 2.8722 -2.2154 3.1002
37 1 3.3811 -6.6531 2.2084
38 1 5.0321 -6.6289 4.4996
39 1 3.3568 -6.9319 5.0190
40 1 6.1661 -8.1472 3.3608
41 1 5.7854 -10.2668 1.8304
42 1 6.5235 -10.6377 3.4083
43 1 7.4914 -13.1398 2.4418
44 1 3.0374 -10.3014 1.9439
45 1 2.3829 -11.3067 3.2640
46 1 2.8222 -9.6189 4.9078
47 1 2.1025 -8.7567 3.5313
48 1 2.7654 -5.7600 0.6777
49 1 1.9403 -4.3821 -1.1842
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001001359334.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:42:39
Heat of formation + Delta-G solvation = -19.807218 kcal
Electronic energy + Delta-G solvation = -29070.895674 eV
Core-core repulsion = 24998.501467 eV
Total energy + Delta-G solvation = -4072.394207 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-41.98082 -40.79341 -39.43556 -38.97719 -36.50802 -34.73583 -34.24553 -33.74791
-32.53990 -31.42614 -31.15312 -28.74112 -28.16350 -26.57124 -25.26386 -24.43931
-24.30455 -23.04529 -22.58732 -21.47080 -20.01856 -19.43246 -18.36050 -17.85806
-17.37905 -17.03364 -16.84855 -16.82030 -16.61996 -16.32518 -15.77443 -15.48377
-15.41212 -15.28616 -15.12876 -14.87396 -14.76268 -14.51888 -14.10189 -13.96529
-13.63425 -13.28889 -13.25990 -13.19250 -13.02744 -12.91951 -12.86437 -12.76121
-12.57699 -12.25360 -12.11247 -11.94412 -11.80184 -11.69473 -11.49996 -11.23875
-11.08593 -10.70048 -10.66432 -10.21070 -9.66362 -9.60018 -8.73162 -7.87413
-5.28077 -0.43879 0.07013 1.12686 1.48064 1.50630 1.56669 1.73407
1.84787 2.31303 2.52279 2.73547 3.22787 3.29855 3.47916 3.62770
3.83968 3.85941 3.88422 3.97149 3.98680 4.03122 4.05158 4.27961
4.43825 4.55614 4.59931 4.61038 4.69765 4.70782 4.75591 4.82862
4.85074 4.85461 4.89091 4.93312 4.96503 5.11788 5.19298 5.22020
5.25154 5.26049 5.35764 5.41776 5.50359 5.62789 5.77272 6.16635
6.21069 6.35238 6.38601 6.71146 7.00395 7.15153 7.85538 8.38468
9.20796
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.030710 B = 0.001728 C = 0.001701
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 911.526915 B =16203.427413 C =16456.269934
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.074 3.926
3 C -0.148 4.148
4 O -0.315 6.315
5 C 0.312 3.688
6 C -0.153 4.153
7 C -0.059 4.059
8 C 0.557 3.443
9 O -0.570 6.570
10 N -0.697 5.697
11 C 0.166 3.834
12 C -0.140 4.140
13 C -0.138 4.138
14 C 0.204 3.796
15 N -0.615 5.615
16 C -0.258 4.258
17 H 0.070 0.930
18 C -0.052 4.052
19 N -0.938 5.938
20 Si 0.965 3.035
21 H -0.275 1.275
22 H -0.295 1.295
23 H -0.282 1.282
24 C 0.138 3.862
25 C -0.085 4.085
26 C -0.171 4.171
27 C 0.144 3.856
28 N -0.532 5.532
29 H 0.060 0.940
30 H 0.091 0.909
31 H 0.047 0.953
32 H 0.086 0.914
33 H 0.059 0.941
34 H 0.099 0.901
35 H 0.065 0.935
36 H 0.140 0.860
37 H 0.415 0.585
38 H 0.066 0.934
39 H 0.074 0.926
40 H 0.113 0.887
41 H 0.017 0.983
42 H 0.056 0.944
43 H 0.249 0.751
44 H 0.032 0.968
45 H 0.058 0.942
46 H 0.062 0.938
47 H 0.090 0.910
48 H 0.171 0.829
49 H 0.204 0.796
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.882 24.123 -8.241 28.125
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.018 3.982
3 C -0.205 4.205
4 O -0.223 6.223
5 C 0.134 3.866
6 C -0.175 4.175
7 C -0.069 4.069
8 C 0.344 3.656
9 O -0.450 6.450
10 N -0.349 5.349
11 C 0.043 3.957
12 C -0.141 4.141
13 C -0.158 4.158
14 C 0.078 3.922
15 N -0.339 5.339
16 C -0.388 4.388
17 H 0.087 0.913
18 C -0.247 4.247
19 N -0.585 5.585
20 Si 0.794 3.206
21 H -0.201 1.201
22 H -0.221 1.221
23 H -0.208 1.208
24 C 0.013 3.987
25 C -0.123 4.123
26 C -0.191 4.191
27 C -0.012 4.012
28 N -0.257 5.257
29 H 0.079 0.921
30 H 0.110 0.890
31 H 0.067 0.933
32 H 0.104 0.896
33 H 0.078 0.922
34 H 0.118 0.882
35 H 0.084 0.916
36 H 0.158 0.842
37 H 0.253 0.747
38 H 0.084 0.916
39 H 0.092 0.908
40 H 0.131 0.869
41 H 0.035 0.965
42 H 0.074 0.926
43 H 0.059 0.941
44 H 0.050 0.950
45 H 0.076 0.924
46 H 0.081 0.919
47 H 0.108 0.892
48 H 0.188 0.812
49 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges -11.851 25.083 -7.978 28.866
hybrid contribution 0.913 -1.694 0.790 2.080
sum -10.938 23.389 -7.187 26.802
Atomic orbital electron populations
1.22193 0.94029 1.02299 1.03606 1.22620 0.95132 0.93533 0.86898
1.21933 1.01793 0.92665 1.04099 1.86306 1.80214 1.15607 1.40159
1.19665 0.92155 0.85234 0.89532 1.21085 1.03580 0.93295 0.99490
1.20039 0.99194 0.93140 0.94578 1.18363 0.77559 0.82372 0.87278
1.90771 1.52854 1.71817 1.29589 1.45893 1.65781 1.06733 1.16458
1.20331 0.99727 0.87182 0.88444 1.20569 0.96085 0.94166 1.03291
1.22974 0.97353 0.98073 0.97426 1.19422 0.90893 0.85802 0.96034
1.44391 1.01285 1.13701 1.74507 1.19473 1.01924 0.92876 1.24484
0.91266 1.25696 0.99322 1.00968 0.98754 1.70146 1.12842 1.43281
1.32206 0.85366 0.76920 0.79698 0.78615 1.20095 1.22127 1.20790
1.21190 0.86700 0.94334 0.96472 1.20739 0.95338 0.95698 1.00565
1.22498 1.01419 1.03272 0.91908 1.23059 0.91311 0.86687 1.00103
1.67236 1.20617 1.13905 1.23915 0.92069 0.88981 0.93336 0.89560
0.92228 0.88221 0.91617 0.84211 0.74692 0.91571 0.90815 0.86904
0.96499 0.92589 0.94147 0.94964 0.92358 0.91916 0.89209 0.81198
0.77907
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.07 9.53 71.98 0.69 -1.38 16
2 C 0.07 1.10 3.11 30.60 0.10 1.20 16
3 C -0.15 -1.57 9.56 71.98 0.69 -0.88 16
4 O -0.31 -6.62 9.76 -90.00 -0.88 -7.50 16
5 C 0.31 6.76 7.45 84.80 0.63 7.39 16
6 C -0.15 -3.53 9.61 22.75 0.22 -3.31 16
7 C -0.06 -1.24 5.91 -19.90 -0.12 -1.36 16
8 C 0.56 14.16 7.80 86.88 0.68 14.84 16
9 O -0.57 -18.93 16.44 -3.75 -0.06 -18.99 16
10 N -0.70 -15.30 5.51 -469.39 -2.58 -17.88 16
11 C 0.17 4.29 5.66 85.63 0.48 4.77 16
12 C -0.14 -4.21 5.22 -15.13 -0.08 -4.28 16
13 C -0.14 -4.83 9.47 27.11 0.26 -4.58 16
14 C 0.20 9.41 5.23 85.42 0.45 9.85 16
15 N -0.61 -29.56 3.01 -703.05 -2.11 -31.67 16
16 C -0.26 -13.81 9.71 84.03 0.82 -13.00 16
17 H 0.07 3.61 7.88 -2.92 -0.02 3.58 16
18 C -0.05 -2.87 5.01 84.86 0.43 -2.45 16
19 N -0.94 -54.18 11.08 21.65 0.24 -53.94 16
20 Si 0.97 44.32 29.58 68.60 2.03 46.35 16
21 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16
22 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16
23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16
24 C 0.14 5.18 6.59 86.32 0.57 5.75 16
25 C -0.08 -2.53 5.95 29.72 0.18 -2.36 16
26 C -0.17 -2.46 9.61 22.63 0.22 -2.24 16
27 C 0.14 1.93 11.17 84.62 0.94 2.88 16
28 N -0.53 -9.82 8.61 -309.14 -2.66 -12.48 16
29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
30 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16
31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16
32 H 0.09 1.34 6.98 -2.39 -0.02 1.32 16
33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16
34 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16
35 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16
36 H 0.14 3.49 7.74 -2.91 -0.02 3.47 16
37 H 0.42 7.11 6.60 -92.71 -0.61 6.50 16
38 H 0.07 1.81 7.78 -2.39 -0.02 1.79 16
39 H 0.07 1.93 8.11 -2.39 -0.02 1.91 16
40 H 0.11 3.53 7.73 -2.91 -0.02 3.51 16
41 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16
42 H 0.06 2.98 6.41 -2.39 -0.02 2.96 16
43 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16
44 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16
45 H 0.06 2.15 7.96 -2.39 -0.02 2.13 16
46 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16
47 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16
48 H 0.17 1.49 6.53 -2.91 -0.02 1.48 16
49 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16
Total: -1.00 -69.89 403.40 1.45 -68.44
By element:
Atomic # 1 Polarization: 16.50 SS G_CDS: 0.34 Total: 16.84 kcal
Atomic # 6 Polarization: 3.70 SS G_CDS: 7.14 Total: 10.84 kcal
Atomic # 7 Polarization: -108.85 SS G_CDS: -7.12 Total: -115.98 kcal
Atomic # 8 Polarization: -25.55 SS G_CDS: -0.94 Total: -26.49 kcal
Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal
Total: -69.89 1.45 -68.44 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001001359334.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.632 kcal
(2) G-P(sol) polarization free energy of solvation -69.890 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.258 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.439 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.807 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.23 seconds