Wall clock time and date at job start Wed Apr 1 2020 04:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47281 * 2 1 4 4 O 1.21282 * 120.00143 * 0.02562 * 3 2 1 5 5 N 1.34772 * 119.99975 * 179.97438 * 3 2 1 6 6 C 1.39293 * 119.99985 * 184.84396 * 5 3 2 7 7 C 1.38849 * 120.16500 * 23.58791 * 6 5 3 8 8 C 1.38026 * 120.07074 * 180.02562 * 7 6 5 9 9 C 1.38560 * 120.40100 * 0.02562 * 8 7 6 10 10 C 1.37793 * 120.33369 * 359.70165 * 9 8 7 11 11 C 1.39684 * 119.92257 * 0.55165 * 10 9 8 12 12 C 1.47517 * 120.20044 * 179.74863 * 11 10 9 13 13 O 1.21599 * 119.99918 * 185.74015 * 12 11 10 14 14 N 1.34776 * 120.00329 * 5.73711 * 12 11 10 15 15 C 1.46496 * 120.00400 * 179.97438 * 14 12 11 16 16 H 1.09008 * 109.52275 * 34.92185 * 15 14 12 17 17 C 1.53038 * 109.50047 * 155.00150 * 15 14 12 18 18 C 1.53038 * 109.54272 * 181.32014 * 17 15 14 19 19 C 1.53199 * 109.31001 * 298.63936 * 18 17 15 20 20 N 1.46924 * 108.77723 * 54.63117 * 19 18 17 21 21 C 1.36938 * 120.63102 * 126.36858 * 20 19 18 22 22 H 1.07993 * 120.00264 * 208.70134 * 21 20 19 23 23 C 1.38815 * 119.99724 * 28.69295 * 21 20 19 24 24 N 1.31613 * 119.99924 * 15.69938 * 23 21 20 25 25 Si 1.86798 * 120.00010 * 195.69341 * 23 21 20 26 26 H 1.48508 * 109.47223 * 265.05521 * 25 23 21 27 27 H 1.48496 * 109.47325 * 145.05723 * 25 23 21 28 28 H 1.48496 * 109.47177 * 25.05250 * 25 23 21 29 29 C 1.46926 * 118.74067 * 306.64582 * 20 19 18 30 30 H 1.08993 * 109.47040 * 59.99620 * 1 2 3 31 31 H 1.09004 * 109.46910 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46915 * 299.99618 * 1 2 3 33 33 H 1.09002 * 109.46673 * 239.99887 * 2 1 3 34 34 H 1.09002 * 109.47212 * 120.00158 * 2 1 3 35 35 H 0.96999 * 120.00134 * 4.84457 * 5 3 2 36 36 H 1.07999 * 119.96503 * 359.97438 * 7 6 5 37 37 H 1.07999 * 119.79450 * 179.97438 * 8 7 6 38 38 H 1.08002 * 119.82731 * 179.97438 * 9 8 7 39 39 H 1.07999 * 120.04184 * 180.28194 * 10 9 8 40 40 H 0.97001 * 119.99669 * 0.02562 * 14 12 11 41 41 H 1.09006 * 109.45506 * 61.29729 * 17 15 14 42 42 H 1.09001 * 109.44953 * 301.33821 * 17 15 14 43 43 H 1.08991 * 109.50064 * 178.68779 * 18 17 15 44 44 H 1.08998 * 109.49466 * 58.58405 * 18 17 15 45 45 H 1.08999 * 109.58286 * 294.84217 * 19 18 17 46 46 H 1.09001 * 109.58276 * 174.42309 * 19 18 17 47 47 H 0.97005 * 120.00016 * 179.97438 * 24 23 21 48 48 H 1.09001 * 109.58669 * 173.14144 * 29 20 19 49 49 H 1.09000 * 109.58407 * 293.57134 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8225 2.9760 0.1024 7 6 3.0258 3.9567 0.6780 8 6 3.4884 5.2533 0.7775 9 6 4.7475 5.5868 0.3049 10 6 5.5542 4.6256 -0.2643 11 6 5.0978 3.3102 -0.3768 12 6 5.9542 2.2775 -0.9901 13 8 5.5161 1.1594 -1.1814 14 7 7.2221 2.5731 -1.3384 15 6 8.0728 1.5474 -1.9470 16 1 7.4668 0.9018 -2.5829 17 6 9.1598 2.2190 -2.7892 18 6 10.0290 1.1477 -3.4518 19 6 10.7086 0.3049 -2.3680 20 7 9.6774 -0.2271 -1.4666 21 6 9.6003 -1.5700 -1.2101 22 1 8.6496 -2.0190 -0.9637 23 6 10.7443 -2.3542 -1.2669 24 7 11.9320 -1.7871 -1.2581 25 14 10.5981 -4.2143 -1.3559 26 1 10.7021 -4.7850 0.0112 27 1 11.6905 -4.7568 -2.2030 28 1 9.2856 -4.5800 -1.9464 29 6 8.7267 0.7085 -0.8505 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.9872 0.9327 -0.0700 36 1 2.0427 3.7049 1.0476 37 1 2.8648 6.0127 1.2257 38 1 5.1000 6.6043 0.3871 39 1 6.5366 4.8898 -0.6270 40 1 7.5717 3.4649 -1.1855 41 1 9.7807 2.8451 -2.1483 42 1 8.6942 2.8356 -3.5580 43 1 10.7884 1.6264 -4.0699 44 1 9.4046 0.5060 -4.0734 45 1 11.4023 0.9272 -1.8027 46 1 11.2493 -0.5200 -2.8320 47 1 12.7315 -2.3352 -1.2974 48 1 7.9601 0.1497 -0.3137 49 1 9.2555 1.3643 -0.1590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008921467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:53 Heat of formation + Delta-G solvation = -23.875264 kcal Electronic energy + Delta-G solvation = -30471.523527 eV Core-core repulsion = 26398.952916 eV Total energy + Delta-G solvation = -4072.570611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.10638 -39.70400 -38.35924 -37.28097 -35.14890 -34.23184 -33.11099 -32.60580 -31.33284 -30.49155 -29.82631 -28.53261 -25.32387 -25.11290 -24.09489 -22.75890 -22.19118 -21.68935 -20.70394 -20.08134 -19.46840 -17.96485 -17.39355 -17.25002 -16.81063 -16.10305 -15.79210 -15.25009 -15.00013 -14.80688 -14.75652 -14.44702 -14.09358 -13.94778 -13.79820 -13.52135 -13.31320 -13.15666 -12.75085 -12.55206 -12.44222 -12.41190 -12.24409 -12.00784 -11.86486 -11.76521 -11.39198 -11.12910 -10.94479 -10.80984 -10.75528 -10.30096 -10.27432 -10.08740 -9.94077 -9.86922 -9.68814 -9.55392 -9.18822 -8.89347 -8.45204 -8.21773 -6.69052 -5.80914 -3.24425 0.68018 1.12923 2.42513 2.83207 2.98757 3.24249 3.36919 3.44123 3.47747 3.77030 4.43658 4.48217 4.60012 4.62422 4.82138 4.84198 4.87292 5.14397 5.21447 5.24249 5.27438 5.35102 5.41780 5.50478 5.57662 5.58004 5.66480 5.69392 5.70311 5.94592 5.98724 6.03237 6.05536 6.10256 6.19997 6.25629 6.30674 6.48323 6.56736 6.59835 6.64254 6.77959 6.79342 6.93437 7.30846 7.33523 7.62593 7.63381 7.79768 7.92120 8.29431 8.44073 9.19577 9.81548 10.37394 11.27862 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011271 B = 0.002930 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.564036 B = 9552.414161 C =11496.726251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C 0.512 3.488 4 O -0.527 6.527 5 N -0.658 5.658 6 C 0.213 3.787 7 C -0.150 4.150 8 C -0.074 4.074 9 C -0.152 4.152 10 C -0.064 4.064 11 C -0.174 4.174 12 C 0.563 3.437 13 O -0.545 6.545 14 N -0.711 5.711 15 C 0.125 3.875 16 H 0.088 0.912 17 C -0.115 4.115 18 C -0.140 4.140 19 C 0.167 3.833 20 N -0.587 5.587 21 C -0.251 4.251 22 H 0.066 0.934 23 C 0.003 3.997 24 N -0.904 5.904 25 Si 0.903 3.097 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.278 1.278 29 C 0.143 3.857 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.429 0.571 36 H 0.154 0.846 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.396 0.604 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.019 0.981 46 H 0.090 0.910 47 H 0.254 0.746 48 H 0.057 0.943 49 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.658 13.219 2.109 20.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C 0.301 3.699 4 O -0.404 6.404 5 N -0.308 5.308 6 C 0.114 3.886 7 C -0.170 4.170 8 C -0.093 4.093 9 C -0.171 4.171 10 C -0.083 4.083 11 C -0.180 4.180 12 C 0.351 3.649 13 O -0.425 6.425 14 N -0.361 5.361 15 C 0.020 3.980 16 H 0.106 0.894 17 C -0.154 4.154 18 C -0.179 4.179 19 C 0.041 3.959 20 N -0.310 5.310 21 C -0.381 4.381 22 H 0.084 0.916 23 C -0.195 4.195 24 N -0.548 5.548 25 Si 0.733 3.267 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.203 1.203 29 C 0.015 3.985 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.275 0.725 36 H 0.171 0.829 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.230 0.770 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.037 0.963 46 H 0.108 0.892 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -16.337 12.817 1.954 20.856 hybrid contribution 0.696 -0.722 -0.026 1.003 sum -15.641 12.095 1.928 19.866 Atomic orbital electron populations 1.21537 0.92708 1.01850 1.03275 1.21661 0.98692 0.92885 1.05270 1.21091 0.81530 0.92506 0.74772 1.90621 1.55579 1.46165 1.48033 1.44140 1.08807 1.08121 1.69724 1.17795 0.91912 0.85257 0.93652 1.21520 1.01832 0.92492 1.01150 1.21243 0.95362 0.95960 0.96725 1.21027 0.94806 0.99615 1.01648 1.21115 0.99305 0.91251 0.96617 1.19754 0.95856 0.94944 1.07426 1.18068 0.81812 0.87134 0.77907 1.90555 1.73430 1.22820 1.55687 1.46029 1.12076 1.15459 1.62515 1.21729 0.90895 0.89003 0.96409 0.89412 1.21686 0.96865 0.98393 0.98410 1.22184 0.98631 0.97333 0.99788 1.20853 0.89735 0.96283 0.88987 1.43970 1.33639 1.02934 1.50444 1.19204 0.92883 0.82777 1.43220 0.91629 1.25050 0.95271 0.98265 1.00959 1.70021 0.96700 1.34159 1.53966 0.86266 0.77306 0.85525 0.77634 1.21439 1.21537 1.20325 1.21085 0.92818 0.92111 0.92447 0.91930 0.91802 0.91991 0.88155 0.88317 0.72540 0.82909 0.85395 0.85435 0.85294 0.76970 0.92185 0.93043 0.92659 0.92412 0.96268 0.89212 0.93641 0.92418 0.96517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.20 37.16 0.34 -0.79 16 2 C -0.15 -1.30 6.42 -27.88 -0.18 -1.48 16 3 C 0.51 6.30 7.65 -10.99 -0.08 6.22 16 4 O -0.53 -7.57 13.04 5.56 0.07 -7.50 16 5 N -0.66 -8.61 4.89 -9.69 -0.05 -8.66 16 6 C 0.21 2.84 6.46 -83.48 -0.54 2.31 16 7 C -0.15 -1.81 8.72 -39.43 -0.34 -2.15 16 8 C -0.07 -0.71 10.03 -39.54 -0.40 -1.11 16 9 C -0.15 -1.35 10.02 -39.63 -0.40 -1.75 16 10 C -0.06 -0.64 9.52 -39.20 -0.37 -1.01 16 11 C -0.17 -2.25 5.89 -104.81 -0.62 -2.86 16 12 C 0.56 8.48 7.71 -12.48 -0.10 8.38 16 13 O -0.55 -9.68 13.47 5.28 0.07 -9.61 16 14 N -0.71 -9.90 5.03 -54.95 -0.28 -10.18 16 15 C 0.12 2.15 2.59 -68.04 -0.18 1.97 16 16 H 0.09 1.73 7.58 -51.92 -0.39 1.34 16 17 C -0.12 -1.79 5.36 -26.69 -0.14 -1.94 16 18 C -0.14 -2.53 6.08 -26.61 -0.16 -2.69 16 19 C 0.17 3.87 5.30 -3.71 -0.02 3.85 16 20 N -0.59 -14.59 3.00 -172.58 -0.52 -15.11 16 21 C -0.25 -6.92 9.58 -15.06 -0.14 -7.07 16 22 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 23 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 24 N -0.90 -25.93 11.16 55.49 0.62 -25.31 16 25 Si 0.90 21.67 29.58 -169.99 -5.03 16.64 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 C 0.14 3.02 6.06 -3.93 -0.02 3.00 16 30 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.43 5.80 5.95 -40.82 -0.24 5.56 16 36 H 0.15 1.93 5.66 -52.49 -0.30 1.64 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 0.97 6.45 -52.49 -0.34 0.63 16 40 H 0.40 4.27 6.67 -40.82 -0.27 4.00 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 2.34 6.06 -51.93 -0.31 2.02 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 49 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 391.09 15.07 5.89 5.89 Total: -1.00 -32.42 391.09 -9.96 -42.38 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.31 Total: 8.58 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -3.44 Total: 2.87 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.22 Total: -59.26 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.14 Total: -17.11 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.42 -9.96 -42.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008921467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.509 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds