Wall clock time and date at job start Wed Apr 1 2020 04:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47281 * 2 1 4 4 O 1.21282 * 120.00143 * 0.02562 * 3 2 1 5 5 N 1.34772 * 119.99975 * 179.97438 * 3 2 1 6 6 C 1.39293 * 119.99985 * 184.84396 * 5 3 2 7 7 C 1.38849 * 120.16500 * 23.58791 * 6 5 3 8 8 C 1.38026 * 120.07074 * 180.02562 * 7 6 5 9 9 C 1.38560 * 120.40100 * 0.02562 * 8 7 6 10 10 C 1.37793 * 120.33369 * 359.70165 * 9 8 7 11 11 C 1.39684 * 119.92257 * 0.55165 * 10 9 8 12 12 C 1.47517 * 120.20044 * 179.74863 * 11 10 9 13 13 O 1.21599 * 119.99918 * 185.74015 * 12 11 10 14 14 N 1.34776 * 120.00329 * 5.73711 * 12 11 10 15 15 C 1.46496 * 120.00400 * 179.97438 * 14 12 11 16 16 H 1.09008 * 109.52275 * 34.92185 * 15 14 12 17 17 C 1.53038 * 109.50047 * 155.00150 * 15 14 12 18 18 C 1.53038 * 109.54272 * 181.32014 * 17 15 14 19 19 C 1.53199 * 109.31001 * 298.63936 * 18 17 15 20 20 N 1.46924 * 108.77723 * 54.63117 * 19 18 17 21 21 C 1.36938 * 120.63102 * 126.36858 * 20 19 18 22 22 H 1.07993 * 120.00264 * 208.70134 * 21 20 19 23 23 C 1.38815 * 119.99724 * 28.69295 * 21 20 19 24 24 N 1.31613 * 119.99924 * 15.69938 * 23 21 20 25 25 Si 1.86798 * 120.00010 * 195.69341 * 23 21 20 26 26 H 1.48508 * 109.47223 * 265.05521 * 25 23 21 27 27 H 1.48496 * 109.47325 * 145.05723 * 25 23 21 28 28 H 1.48496 * 109.47177 * 25.05250 * 25 23 21 29 29 C 1.46926 * 118.74067 * 306.64582 * 20 19 18 30 30 H 1.08993 * 109.47040 * 59.99620 * 1 2 3 31 31 H 1.09004 * 109.46910 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46915 * 299.99618 * 1 2 3 33 33 H 1.09002 * 109.46673 * 239.99887 * 2 1 3 34 34 H 1.09002 * 109.47212 * 120.00158 * 2 1 3 35 35 H 0.96999 * 120.00134 * 4.84457 * 5 3 2 36 36 H 1.07999 * 119.96503 * 359.97438 * 7 6 5 37 37 H 1.07999 * 119.79450 * 179.97438 * 8 7 6 38 38 H 1.08002 * 119.82731 * 179.97438 * 9 8 7 39 39 H 1.07999 * 120.04184 * 180.28194 * 10 9 8 40 40 H 0.97001 * 119.99669 * 0.02562 * 14 12 11 41 41 H 1.09006 * 109.45506 * 61.29729 * 17 15 14 42 42 H 1.09001 * 109.44953 * 301.33821 * 17 15 14 43 43 H 1.08991 * 109.50064 * 178.68779 * 18 17 15 44 44 H 1.08998 * 109.49466 * 58.58405 * 18 17 15 45 45 H 1.08999 * 109.58286 * 294.84217 * 19 18 17 46 46 H 1.09001 * 109.58276 * 174.42309 * 19 18 17 47 47 H 0.97005 * 120.00016 * 179.97438 * 24 23 21 48 48 H 1.09001 * 109.58669 * 173.14144 * 29 20 19 49 49 H 1.09000 * 109.58407 * 293.57134 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8225 2.9760 0.1024 7 6 3.0258 3.9567 0.6780 8 6 3.4884 5.2533 0.7775 9 6 4.7475 5.5868 0.3049 10 6 5.5542 4.6256 -0.2643 11 6 5.0978 3.3102 -0.3768 12 6 5.9542 2.2775 -0.9901 13 8 5.5161 1.1594 -1.1814 14 7 7.2221 2.5731 -1.3384 15 6 8.0728 1.5474 -1.9470 16 1 7.4668 0.9018 -2.5829 17 6 9.1598 2.2190 -2.7892 18 6 10.0290 1.1477 -3.4518 19 6 10.7086 0.3049 -2.3680 20 7 9.6774 -0.2271 -1.4666 21 6 9.6003 -1.5700 -1.2101 22 1 8.6496 -2.0190 -0.9637 23 6 10.7443 -2.3542 -1.2669 24 7 11.9320 -1.7871 -1.2581 25 14 10.5981 -4.2143 -1.3559 26 1 10.7021 -4.7850 0.0112 27 1 11.6905 -4.7568 -2.2030 28 1 9.2856 -4.5800 -1.9464 29 6 8.7267 0.7085 -0.8505 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.9872 0.9327 -0.0700 36 1 2.0427 3.7049 1.0476 37 1 2.8648 6.0127 1.2257 38 1 5.1000 6.6043 0.3871 39 1 6.5366 4.8898 -0.6270 40 1 7.5717 3.4649 -1.1855 41 1 9.7807 2.8451 -2.1483 42 1 8.6942 2.8356 -3.5580 43 1 10.7884 1.6264 -4.0699 44 1 9.4046 0.5060 -4.0734 45 1 11.4023 0.9272 -1.8027 46 1 11.2493 -0.5200 -2.8320 47 1 12.7315 -2.3352 -1.2974 48 1 7.9601 0.1497 -0.3137 49 1 9.2555 1.3643 -0.1590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008921467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:52 Heat of formation + Delta-G solvation = -44.243574 kcal Electronic energy + Delta-G solvation = -30472.406763 eV Core-core repulsion = 26398.952916 eV Total energy + Delta-G solvation = -4073.453847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.08302 -40.84943 -39.45606 -38.67284 -36.31674 -35.57791 -34.23893 -33.85388 -32.39221 -32.33582 -30.67483 -29.98460 -27.26101 -25.95098 -25.09323 -23.89610 -23.83881 -22.88769 -21.82851 -21.06631 -21.01816 -18.99024 -18.72476 -18.31608 -18.17289 -17.26522 -16.95561 -16.70114 -16.25788 -16.07781 -15.76007 -15.66817 -15.41002 -15.24701 -14.94430 -14.81384 -14.61392 -14.35999 -14.15427 -14.04295 -13.62139 -13.40497 -13.25058 -13.05543 -13.01387 -12.75650 -12.74010 -12.57666 -12.50924 -12.12852 -12.10120 -11.97500 -11.76578 -11.66015 -11.56550 -11.31746 -11.01812 -10.72028 -10.62329 -10.25383 -9.94032 -9.12449 -8.68106 -7.90437 -5.36949 -0.22458 0.30282 1.44239 1.45787 1.51325 1.56360 1.79910 2.05918 2.07442 2.50447 2.87550 3.24696 3.58524 3.59090 3.76416 3.80126 3.91942 4.08900 4.11438 4.14435 4.17696 4.24708 4.39534 4.42617 4.45818 4.47828 4.58398 4.66828 4.81077 4.87659 4.92972 4.94979 4.99501 5.02166 5.09799 5.12600 5.15669 5.26895 5.27138 5.30496 5.42880 5.46300 5.51292 5.55484 5.63136 5.76916 5.95780 6.33728 6.37131 6.52636 6.95649 7.12862 7.19686 7.82512 8.32461 9.15396 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011271 B = 0.002930 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.564036 B = 9552.414161 C =11496.726251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.143 4.143 3 C 0.505 3.495 4 O -0.553 6.553 5 N -0.663 5.663 6 C 0.186 3.814 7 C -0.167 4.167 8 C -0.066 4.066 9 C -0.143 4.143 10 C -0.058 4.058 11 C -0.192 4.192 12 C 0.559 3.441 13 O -0.580 6.580 14 N -0.698 5.698 15 C 0.142 3.858 16 H 0.061 0.939 17 C -0.106 4.106 18 C -0.130 4.130 19 C 0.171 3.829 20 N -0.606 5.606 21 C -0.267 4.267 22 H 0.055 0.945 23 C -0.044 4.044 24 N -0.930 5.930 25 Si 0.965 3.035 26 H -0.285 1.285 27 H -0.287 1.287 28 H -0.274 1.274 29 C 0.146 3.854 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.424 0.576 36 H 0.141 0.859 37 H 0.157 0.843 38 H 0.166 0.834 39 H 0.158 0.842 40 H 0.415 0.585 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.047 0.953 45 H 0.005 0.995 46 H 0.054 0.946 47 H 0.252 0.748 48 H 0.033 0.967 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.939 15.592 1.845 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.182 4.182 3 C 0.296 3.704 4 O -0.431 6.431 5 N -0.312 5.312 6 C 0.088 3.912 7 C -0.187 4.187 8 C -0.085 4.085 9 C -0.162 4.162 10 C -0.077 4.077 11 C -0.198 4.198 12 C 0.349 3.651 13 O -0.462 6.462 14 N -0.349 5.349 15 C 0.036 3.964 16 H 0.079 0.921 17 C -0.143 4.143 18 C -0.169 4.169 19 C 0.046 3.954 20 N -0.330 5.330 21 C -0.397 4.397 22 H 0.073 0.927 23 C -0.240 4.240 24 N -0.576 5.576 25 Si 0.793 3.207 26 H -0.212 1.212 27 H -0.213 1.213 28 H -0.198 1.198 29 C 0.019 3.981 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.125 0.875 34 H 0.134 0.866 35 H 0.269 0.731 36 H 0.158 0.842 37 H 0.174 0.826 38 H 0.183 0.817 39 H 0.176 0.824 40 H 0.253 0.747 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.066 0.934 45 H 0.023 0.977 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.051 0.949 49 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -16.626 15.247 1.695 22.623 hybrid contribution 0.753 -1.379 0.132 1.577 sum -15.873 13.868 1.828 21.157 Atomic orbital electron populations 1.21526 0.92092 1.02986 1.02383 1.21751 0.99137 0.90937 1.06397 1.21691 0.81136 0.93598 0.73992 1.90597 1.55973 1.47223 1.49342 1.44223 1.08988 1.08238 1.69757 1.18137 0.92688 0.85628 0.94763 1.21547 1.01494 0.93603 1.02094 1.21642 0.96079 0.95322 0.95452 1.21459 0.93912 1.01017 0.99779 1.21495 1.00597 0.89961 0.95652 1.19676 0.95538 0.95666 1.08922 1.18493 0.82098 0.87185 0.77333 1.90542 1.74167 1.24492 1.56972 1.45740 1.11398 1.15578 1.62150 1.21216 0.91144 0.89303 0.94729 0.92083 1.21624 0.95945 0.97706 0.99074 1.22015 0.99280 0.97367 0.98248 1.20725 0.89495 0.95498 0.89716 1.44195 1.34616 1.02756 1.51463 1.19409 0.92612 0.84578 1.43115 0.92687 1.25743 0.94935 1.02235 1.01073 1.70154 0.97089 1.35396 1.54930 0.85303 0.77285 0.80623 0.77510 1.21159 1.21272 1.19849 1.21117 0.91607 0.91739 0.93634 0.93137 0.89584 0.92552 0.87466 0.86554 0.73092 0.84154 0.82583 0.81667 0.82438 0.74713 0.90449 0.89499 0.89772 0.93415 0.97691 0.92737 0.93902 0.94855 0.96256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 9.20 71.98 0.66 -1.51 16 2 C -0.14 -2.58 6.42 29.85 0.19 -2.39 16 3 C 0.51 12.93 7.65 87.66 0.67 13.60 16 4 O -0.55 -16.48 13.04 -3.04 -0.04 -16.52 16 5 N -0.66 -18.11 4.89 -302.95 -1.48 -19.59 16 6 C 0.19 5.01 6.46 38.60 0.25 5.26 16 7 C -0.17 -3.96 8.72 22.37 0.20 -3.76 16 8 C -0.07 -1.10 10.03 22.30 0.22 -0.87 16 9 C -0.14 -1.96 10.02 22.24 0.22 -1.74 16 10 C -0.06 -0.98 9.52 22.51 0.21 -0.76 16 11 C -0.19 -4.77 5.89 -19.99 -0.12 -4.88 16 12 C 0.56 16.64 7.71 86.69 0.67 17.31 16 13 O -0.58 -21.25 13.47 -4.03 -0.05 -21.31 16 14 N -0.70 -18.23 5.03 -446.03 -2.24 -20.47 16 15 C 0.14 4.78 2.59 44.92 0.12 4.90 16 16 H 0.06 2.42 7.58 -2.38 -0.02 2.41 16 17 C -0.11 -2.97 5.36 30.62 0.16 -2.81 16 18 C -0.13 -4.50 6.08 30.67 0.19 -4.32 16 19 C 0.17 8.01 5.30 86.37 0.46 8.47 16 20 N -0.61 -30.89 3.00 -699.92 -2.10 -32.99 16 21 C -0.27 -15.18 9.58 84.03 0.81 -14.37 16 22 H 0.06 3.16 7.88 -2.91 -0.02 3.14 16 23 C -0.04 -2.49 4.94 84.86 0.42 -2.07 16 24 N -0.93 -54.66 11.16 21.65 0.24 -54.42 16 25 Si 0.97 45.46 29.58 68.60 2.03 47.49 16 26 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 27 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 28 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 29 C 0.15 6.25 6.06 86.22 0.52 6.77 16 30 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 31 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 33 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.42 12.17 5.95 -92.71 -0.55 11.62 16 36 H 0.14 3.65 5.66 -2.91 -0.02 3.63 16 37 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 38 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.16 1.64 6.45 -2.91 -0.02 1.62 16 40 H 0.41 7.56 6.67 -92.71 -0.62 6.94 16 41 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.08 2.45 8.14 -2.39 -0.02 2.44 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 46 H 0.05 2.92 6.06 -2.39 -0.01 2.91 16 47 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 48 H 0.03 1.55 7.93 -2.39 -0.02 1.53 16 49 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -74.62 391.09 2.02 -72.61 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: -0.19 Total: 28.38 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 5.85 Total: 16.82 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -5.58 Total: -127.47 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.09 Total: -37.83 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -74.62 2.02 -72.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008921467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.362 kcal (2) G-P(sol) polarization free energy of solvation -74.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds