Wall clock time and date at job start Wed Apr 1 2020 04:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50702 * 109.46762 * 2 1 4 4 O 1.21282 * 120.00450 * 0.02562 * 3 2 1 5 5 N 1.34784 * 119.99942 * 179.97438 * 3 2 1 6 6 C 1.39949 * 120.00128 * 184.61937 * 5 3 2 7 7 C 1.38992 * 120.00317 * 144.55999 * 6 5 3 8 8 C 1.38208 * 120.22446 * 180.02562 * 7 6 5 9 9 C 1.38019 * 120.22470 * 359.97438 * 8 7 6 10 10 C 1.39577 * 119.99445 * 359.97202 * 9 8 7 11 11 C 1.47863 * 120.10917 * 180.02562 * 10 9 8 12 12 O 1.21558 * 119.99835 * 180.02562 * 11 10 9 13 13 N 1.34769 * 120.00316 * 0.02562 * 11 10 9 14 14 C 1.46505 * 120.00362 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47124 * 185.07957 * 14 13 11 16 16 H 1.09005 * 109.87712 * 303.31496 * 15 14 13 17 17 C 1.54325 * 109.88674 * 64.33179 * 15 14 13 18 18 C 1.55154 * 102.94357 * 141.60750 * 17 15 14 19 19 C 1.54906 * 101.58101 * 324.49856 * 18 17 15 20 20 N 1.47026 * 109.88056 * 182.14316 * 15 14 13 21 21 C 1.36930 * 125.65247 * 61.61973 * 20 15 14 22 22 H 1.08006 * 119.99641 * 12.39753 * 21 20 15 23 23 C 1.38808 * 120.00538 * 192.39910 * 21 20 15 24 24 N 1.31620 * 119.99571 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00243 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47268 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47361 * 119.99874 * 25 23 21 28 28 H 1.48496 * 109.47465 * 239.99796 * 25 23 21 29 29 C 1.38596 * 119.99685 * 324.27644 * 6 5 3 30 30 H 1.08994 * 109.46670 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46847 * 299.99673 * 1 2 3 32 32 H 1.08993 * 109.46933 * 59.99869 * 1 2 3 33 33 H 1.09003 * 109.46923 * 240.00492 * 2 1 3 34 34 H 1.09001 * 109.47262 * 120.00105 * 2 1 3 35 35 H 0.97000 * 119.99646 * 4.61787 * 5 3 2 36 36 H 1.07999 * 119.88216 * 359.97438 * 7 6 5 37 37 H 1.08002 * 119.88441 * 179.97438 * 8 7 6 38 38 H 1.07997 * 120.00455 * 180.02562 * 9 8 7 39 39 H 0.97009 * 120.00065 * 359.97438 * 13 11 10 40 40 H 1.08994 * 109.46855 * 305.07891 * 14 13 11 41 41 H 1.08997 * 109.46766 * 65.07622 * 14 13 11 42 42 H 1.08994 * 110.72498 * 259.97842 * 17 15 14 43 43 H 1.09008 * 110.71592 * 23.24821 * 17 15 14 44 44 H 1.08994 * 111.00117 * 82.57664 * 18 17 15 45 45 H 1.09008 * 111.00481 * 206.42734 * 18 17 15 46 46 H 1.09008 * 110.36329 * 155.84654 * 19 18 17 47 47 H 1.08997 * 110.37103 * 278.05746 * 19 18 17 48 48 H 0.97005 * 120.00003 * 179.97438 * 24 23 21 49 49 H 1.07999 * 120.11636 * 359.97438 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3575 1.6672 0.0005 6 6 3.8246 2.9828 0.0981 7 6 4.9909 3.2557 0.8032 8 6 5.4560 4.5534 0.9030 9 6 4.7659 5.5869 0.3027 10 6 3.5943 5.3232 -0.4086 11 6 2.8532 6.4285 -1.0533 12 8 1.8328 6.1966 -1.6718 13 7 3.3090 7.6930 -0.9550 14 6 2.5751 8.7880 -1.5942 15 6 3.3648 10.0894 -1.4404 16 1 3.5525 10.2864 -0.3849 17 6 4.7035 9.9840 -2.2008 18 6 4.8719 11.4026 -2.8061 19 6 3.4054 11.7754 -3.1376 20 7 2.6121 11.2041 -2.0341 21 6 1.3784 11.6392 -1.6294 22 1 0.9642 11.2940 -0.6936 23 6 0.6601 12.5241 -2.4219 24 7 1.1651 12.9452 -3.5620 25 14 -1.0231 13.1170 -1.8702 26 1 -1.3608 12.5008 -0.5619 27 1 -1.0059 14.5954 -1.7306 28 1 -2.0405 12.7270 -2.8790 29 6 3.1274 4.0128 -0.5133 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 3.9873 0.9326 -0.0667 36 1 5.5349 2.4511 1.2754 37 1 6.3627 4.7592 1.4526 38 1 5.1328 6.5995 0.3825 39 1 4.1231 7.8781 -0.4610 40 1 2.4420 8.5668 -2.6531 41 1 1.5995 8.8967 -1.1203 42 1 5.5199 9.7579 -1.5149 43 1 4.6414 9.2334 -2.9888 44 1 5.2946 12.0917 -2.0750 45 1 5.4810 11.3721 -3.7097 46 1 3.2871 12.8586 -3.1686 47 1 3.1076 11.3346 -4.0889 48 1 0.6631 13.5632 -4.1161 49 1 2.2237 3.8023 -1.0659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027918357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:26 Heat of formation + Delta-G solvation = -23.089024 kcal Electronic energy + Delta-G solvation = -29568.084834 eV Core-core repulsion = 25495.548317 eV Total energy + Delta-G solvation = -4072.536517 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.92928 -39.69741 -38.30364 -37.47543 -35.11238 -34.24140 -33.25370 -32.46289 -31.37749 -30.08470 -29.50380 -28.48369 -25.27341 -25.07628 -24.35275 -23.03660 -22.60875 -20.59001 -20.49664 -20.06265 -19.58157 -18.32067 -17.57099 -16.73862 -16.55848 -16.18385 -15.94045 -15.82943 -15.07089 -14.87771 -14.59686 -14.48116 -14.24475 -13.93028 -13.81708 -13.66760 -13.24357 -13.17184 -12.76769 -12.61483 -12.16852 -12.13967 -12.04439 -11.87755 -11.79734 -11.70739 -11.56941 -11.28141 -10.92432 -10.78052 -10.69028 -10.22030 -10.09177 -10.06926 -9.92084 -9.82901 -9.70026 -9.58704 -9.15265 -8.63627 -8.55456 -8.46333 -6.83614 -5.73498 -3.10062 0.68947 1.10299 2.22484 2.62875 2.98227 3.40622 3.45596 3.49449 3.51321 3.82930 4.23831 4.50556 4.58304 4.62841 4.65080 4.66030 4.90994 4.96647 5.05719 5.24650 5.26613 5.36049 5.40628 5.42425 5.52850 5.54984 5.63654 5.67411 5.82813 5.88449 5.98305 6.02678 6.08492 6.11968 6.17117 6.25205 6.26172 6.47815 6.56950 6.64171 6.70365 6.74291 6.84840 6.97943 7.08275 7.55350 7.62375 7.77132 7.82198 7.82639 8.27968 8.51732 9.20072 9.80533 10.46811 11.37812 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013684 B = 0.002300 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.739082 B =12169.430209 C =13730.859097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.140 4.140 3 C 0.505 3.495 4 O -0.508 6.508 5 N -0.677 5.677 6 C 0.132 3.868 7 C -0.126 4.126 8 C -0.108 4.108 9 C -0.101 4.101 10 C -0.108 4.108 11 C 0.548 3.452 12 O -0.533 6.533 13 N -0.717 5.717 14 C 0.109 3.891 15 C 0.152 3.848 16 H 0.038 0.962 17 C -0.127 4.127 18 C -0.148 4.148 19 C 0.170 3.830 20 N -0.589 5.589 21 C -0.231 4.231 22 H 0.077 0.923 23 C -0.003 4.003 24 N -0.917 5.917 25 Si 0.911 3.089 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.289 1.289 29 C -0.064 4.064 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.411 0.589 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.394 0.606 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.077 0.923 47 H 0.024 0.976 48 H 0.253 0.747 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.603 -25.625 8.985 29.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.180 4.180 3 C 0.292 3.708 4 O -0.381 6.381 5 N -0.323 5.323 6 C 0.038 3.962 7 C -0.146 4.146 8 C -0.127 4.127 9 C -0.121 4.121 10 C -0.112 4.112 11 C 0.334 3.666 12 O -0.410 6.410 13 N -0.368 5.368 14 C -0.016 4.016 15 C 0.043 3.957 16 H 0.055 0.945 17 C -0.165 4.165 18 C -0.187 4.187 19 C 0.046 3.954 20 N -0.313 5.313 21 C -0.360 4.360 22 H 0.095 0.905 23 C -0.200 4.200 24 N -0.563 5.563 25 Si 0.741 3.259 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.216 1.216 29 C -0.085 4.085 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.247 0.753 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.229 0.771 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.042 0.958 48 H 0.063 0.937 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 11.030 -24.963 8.445 28.568 hybrid contribution -0.125 -0.054 0.446 0.467 sum 10.905 -25.017 8.891 28.702 Atomic orbital electron populations 1.21565 0.92544 1.01877 1.03844 1.21635 0.99111 0.92712 1.04547 1.21114 0.81553 0.92564 0.75542 1.90810 1.54882 1.46137 1.46277 1.43548 1.08035 1.06844 1.73894 1.17625 0.95567 0.84540 0.98463 1.21037 0.96742 0.97707 0.99144 1.20867 1.00141 0.91772 0.99898 1.21352 0.94141 0.99752 0.96845 1.20008 0.96344 0.93994 1.00810 1.18228 0.84799 0.82818 0.80730 1.90803 1.24395 1.83854 1.41957 1.46048 1.28851 1.06836 1.55069 1.22277 0.96289 0.85207 0.97854 1.21126 0.90851 0.87306 0.96382 0.94463 1.22614 0.96386 0.98147 0.99319 1.23008 1.00442 0.95758 0.99502 1.21505 0.84333 0.99736 0.89869 1.44503 1.18162 1.31237 1.37403 1.19057 0.91798 1.22715 1.02396 0.90498 1.24883 0.98452 1.00538 0.96156 1.69948 1.37459 1.36146 1.12770 0.86057 0.83890 0.78065 0.77843 1.20359 1.21738 1.21611 1.21401 1.00167 0.90418 0.96545 0.91809 0.91764 0.91627 0.88579 0.88616 0.75342 0.85424 0.84954 0.85283 0.77119 0.91434 0.91416 0.92415 0.91791 0.92288 0.92355 0.90462 0.95806 0.93685 0.83075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.20 37.16 0.34 -0.63 16 2 C -0.14 -0.75 6.42 -27.88 -0.18 -0.93 16 3 C 0.50 4.87 7.67 -10.98 -0.08 4.79 16 4 O -0.51 -7.58 13.46 5.56 0.07 -7.51 16 5 N -0.68 -5.22 5.33 -9.89 -0.05 -5.27 16 6 C 0.13 1.39 6.28 -83.74 -0.53 0.86 16 7 C -0.13 -1.01 9.96 -39.31 -0.39 -1.40 16 8 C -0.11 -0.88 10.02 -39.67 -0.40 -1.28 16 9 C -0.10 -1.05 9.54 -39.16 -0.37 -1.43 16 10 C -0.11 -1.53 5.87 -104.99 -0.62 -2.14 16 11 C 0.55 9.74 7.77 -12.32 -0.10 9.64 16 12 O -0.53 -11.90 16.34 5.31 0.09 -11.81 16 13 N -0.72 -11.57 5.27 -61.25 -0.32 -11.89 16 14 C 0.11 2.19 5.07 -4.04 -0.02 2.17 16 15 C 0.15 3.05 3.22 -66.95 -0.22 2.83 16 16 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 17 C -0.13 -2.13 6.09 -24.90 -0.15 -2.28 16 18 C -0.15 -2.74 7.08 -24.59 -0.17 -2.91 16 19 C 0.17 4.11 5.45 -2.53 -0.01 4.09 16 20 N -0.59 -14.82 3.13 -162.57 -0.51 -15.33 16 21 C -0.23 -6.44 9.78 -15.06 -0.15 -6.59 16 22 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 23 C 0.00 -0.10 5.47 -17.43 -0.10 -0.19 16 24 N -0.92 -27.02 10.49 55.49 0.58 -26.44 16 25 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 C -0.06 -0.92 8.24 -38.98 -0.32 -1.24 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.41 1.44 8.82 -40.82 -0.36 1.08 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.13 1.07 6.40 -52.49 -0.34 0.73 16 39 H 0.39 4.98 6.36 -40.82 -0.26 4.72 16 40 H 0.07 1.52 8.08 -51.93 -0.42 1.10 16 41 H 0.07 1.54 7.93 -51.93 -0.41 1.13 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.08 7.81 -51.92 -0.41 0.67 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 46 H 0.08 2.07 6.76 -51.92 -0.35 1.72 16 47 H 0.02 0.63 8.10 -51.93 -0.42 0.21 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 49 H 0.15 2.61 5.86 -52.49 -0.31 2.30 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -36.82 399.61 -10.07 -46.89 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.46 Total: 4.45 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -3.46 Total: 3.35 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.30 Total: -58.94 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.16 Total: -19.32 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.82 -10.07 -46.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027918357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.799 kcal (2) G-P(sol) polarization free energy of solvation -36.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds