Wall clock time and date at job start Wed Apr 1 2020 04:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50702 * 109.46762 * 2 1 4 4 O 1.21282 * 120.00450 * 0.02562 * 3 2 1 5 5 N 1.34784 * 119.99942 * 179.97438 * 3 2 1 6 6 C 1.39949 * 120.00128 * 184.61937 * 5 3 2 7 7 C 1.38992 * 120.00317 * 144.55999 * 6 5 3 8 8 C 1.38208 * 120.22446 * 180.02562 * 7 6 5 9 9 C 1.38019 * 120.22470 * 359.97438 * 8 7 6 10 10 C 1.39577 * 119.99445 * 359.97202 * 9 8 7 11 11 C 1.47863 * 120.10917 * 180.02562 * 10 9 8 12 12 O 1.21558 * 119.99835 * 180.02562 * 11 10 9 13 13 N 1.34769 * 120.00316 * 0.02562 * 11 10 9 14 14 C 1.46505 * 120.00362 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47124 * 185.07957 * 14 13 11 16 16 H 1.09005 * 109.87712 * 303.31496 * 15 14 13 17 17 C 1.54325 * 109.88674 * 64.33179 * 15 14 13 18 18 C 1.55154 * 102.94357 * 141.60750 * 17 15 14 19 19 C 1.54906 * 101.58101 * 324.49856 * 18 17 15 20 20 N 1.47026 * 109.88056 * 182.14316 * 15 14 13 21 21 C 1.36930 * 125.65247 * 61.61973 * 20 15 14 22 22 H 1.08006 * 119.99641 * 12.39753 * 21 20 15 23 23 C 1.38808 * 120.00538 * 192.39910 * 21 20 15 24 24 N 1.31620 * 119.99571 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00243 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47268 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47361 * 119.99874 * 25 23 21 28 28 H 1.48496 * 109.47465 * 239.99796 * 25 23 21 29 29 C 1.38596 * 119.99685 * 324.27644 * 6 5 3 30 30 H 1.08994 * 109.46670 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46847 * 299.99673 * 1 2 3 32 32 H 1.08993 * 109.46933 * 59.99869 * 1 2 3 33 33 H 1.09003 * 109.46923 * 240.00492 * 2 1 3 34 34 H 1.09001 * 109.47262 * 120.00105 * 2 1 3 35 35 H 0.97000 * 119.99646 * 4.61787 * 5 3 2 36 36 H 1.07999 * 119.88216 * 359.97438 * 7 6 5 37 37 H 1.08002 * 119.88441 * 179.97438 * 8 7 6 38 38 H 1.07997 * 120.00455 * 180.02562 * 9 8 7 39 39 H 0.97009 * 120.00065 * 359.97438 * 13 11 10 40 40 H 1.08994 * 109.46855 * 305.07891 * 14 13 11 41 41 H 1.08997 * 109.46766 * 65.07622 * 14 13 11 42 42 H 1.08994 * 110.72498 * 259.97842 * 17 15 14 43 43 H 1.09008 * 110.71592 * 23.24821 * 17 15 14 44 44 H 1.08994 * 111.00117 * 82.57664 * 18 17 15 45 45 H 1.09008 * 111.00481 * 206.42734 * 18 17 15 46 46 H 1.09008 * 110.36329 * 155.84654 * 19 18 17 47 47 H 1.08997 * 110.37103 * 278.05746 * 19 18 17 48 48 H 0.97005 * 120.00003 * 179.97438 * 24 23 21 49 49 H 1.07999 * 120.11636 * 359.97438 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3575 1.6672 0.0005 6 6 3.8246 2.9828 0.0981 7 6 4.9909 3.2557 0.8032 8 6 5.4560 4.5534 0.9030 9 6 4.7659 5.5869 0.3027 10 6 3.5943 5.3232 -0.4086 11 6 2.8532 6.4285 -1.0533 12 8 1.8328 6.1966 -1.6718 13 7 3.3090 7.6930 -0.9550 14 6 2.5751 8.7880 -1.5942 15 6 3.3648 10.0894 -1.4404 16 1 3.5525 10.2864 -0.3849 17 6 4.7035 9.9840 -2.2008 18 6 4.8719 11.4026 -2.8061 19 6 3.4054 11.7754 -3.1376 20 7 2.6121 11.2041 -2.0341 21 6 1.3784 11.6392 -1.6294 22 1 0.9642 11.2940 -0.6936 23 6 0.6601 12.5241 -2.4219 24 7 1.1651 12.9452 -3.5620 25 14 -1.0231 13.1170 -1.8702 26 1 -1.3608 12.5008 -0.5619 27 1 -1.0059 14.5954 -1.7306 28 1 -2.0405 12.7270 -2.8790 29 6 3.1274 4.0128 -0.5133 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 3.9873 0.9326 -0.0667 36 1 5.5349 2.4511 1.2754 37 1 6.3627 4.7592 1.4526 38 1 5.1328 6.5995 0.3825 39 1 4.1231 7.8781 -0.4610 40 1 2.4420 8.5668 -2.6531 41 1 1.5995 8.8967 -1.1203 42 1 5.5199 9.7579 -1.5149 43 1 4.6414 9.2334 -2.9888 44 1 5.2946 12.0917 -2.0750 45 1 5.4810 11.3721 -3.7097 46 1 3.2871 12.8586 -3.1686 47 1 3.1076 11.3346 -4.0889 48 1 0.6631 13.5632 -4.1161 49 1 2.2237 3.8023 -1.0659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027918357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:25 Heat of formation + Delta-G solvation = -50.067035 kcal Electronic energy + Delta-G solvation = -29569.254688 eV Core-core repulsion = 25495.548317 eV Total energy + Delta-G solvation = -4073.706371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.77666 -40.92937 -39.51876 -38.95023 -36.05091 -35.74034 -34.43815 -33.82717 -32.34471 -31.45332 -30.88188 -29.99467 -26.85408 -26.09651 -25.79299 -24.34317 -23.34391 -22.08007 -21.52805 -21.28563 -21.18004 -19.51141 -18.62803 -18.27319 -17.52872 -17.27214 -17.05026 -16.81886 -16.63797 -16.41263 -15.94737 -15.68785 -15.48662 -15.28651 -14.80386 -14.70804 -14.63882 -14.30040 -13.99338 -13.68871 -13.65067 -13.42292 -13.21351 -13.04271 -12.89767 -12.83517 -12.78421 -12.70848 -12.58994 -12.06896 -12.01349 -11.89510 -11.75342 -11.52991 -11.48531 -11.41604 -11.10274 -10.90096 -10.72197 -10.26165 -9.91218 -9.24709 -8.90496 -7.90450 -5.27962 -0.20490 0.28158 1.40636 1.43409 1.49500 1.52545 1.84046 1.95185 2.14490 2.47023 2.85578 3.28084 3.55489 3.68743 3.77494 3.91105 3.94979 3.96718 4.08232 4.19022 4.19949 4.23606 4.25170 4.41423 4.43893 4.49316 4.54543 4.69701 4.71711 4.89145 4.93425 4.94762 4.98112 5.01441 5.12312 5.18113 5.23376 5.27999 5.30263 5.31637 5.37579 5.43331 5.45370 5.53055 5.66130 5.77376 5.93870 6.21006 6.40086 6.51247 7.06756 7.14942 7.17063 7.73678 8.38441 9.19704 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013684 B = 0.002300 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.739082 B =12169.430209 C =13730.859097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.495 3.505 4 O -0.573 6.573 5 N -0.660 5.660 6 C 0.123 3.877 7 C -0.102 4.102 8 C -0.096 4.096 9 C -0.095 4.095 10 C -0.135 4.135 11 C 0.544 3.456 12 O -0.595 6.595 13 N -0.696 5.696 14 C 0.128 3.872 15 C 0.149 3.851 16 H 0.056 0.944 17 C -0.113 4.113 18 C -0.132 4.132 19 C 0.170 3.830 20 N -0.611 5.611 21 C -0.238 4.238 22 H 0.076 0.924 23 C -0.062 4.062 24 N -0.945 5.945 25 Si 0.972 3.028 26 H -0.269 1.269 27 H -0.285 1.285 28 H -0.296 1.296 29 C -0.096 4.096 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.434 0.566 36 H 0.175 0.825 37 H 0.179 0.821 38 H 0.154 0.846 39 H 0.416 0.584 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.110 0.890 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.042 0.958 47 H -0.012 1.012 48 H 0.248 0.752 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.221 -28.350 11.989 35.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.285 3.715 4 O -0.451 6.451 5 N -0.308 5.308 6 C 0.029 3.971 7 C -0.122 4.122 8 C -0.114 4.114 9 C -0.114 4.114 10 C -0.139 4.139 11 C 0.333 3.667 12 O -0.477 6.477 13 N -0.349 5.349 14 C 0.002 3.998 15 C 0.041 3.959 16 H 0.074 0.926 17 C -0.151 4.151 18 C -0.170 4.170 19 C 0.045 3.955 20 N -0.335 5.335 21 C -0.368 4.368 22 H 0.094 0.906 23 C -0.255 4.255 24 N -0.594 5.594 25 Si 0.800 3.200 26 H -0.194 1.194 27 H -0.211 1.211 28 H -0.223 1.223 29 C -0.118 4.118 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.274 0.726 36 H 0.192 0.808 37 H 0.196 0.804 38 H 0.172 0.828 39 H 0.255 0.745 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.129 0.871 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.061 0.939 47 H 0.006 0.994 48 H 0.057 0.943 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 15.751 -27.740 11.494 33.907 hybrid contribution -1.512 0.671 -0.435 1.710 sum 14.239 -27.069 11.059 32.524 Atomic orbital electron populations 1.21585 0.94234 1.02827 1.01501 1.21708 0.97536 0.90004 1.07567 1.22031 0.81682 0.93735 0.74026 1.90807 1.56599 1.48389 1.49277 1.43460 1.07991 1.06657 1.72704 1.17787 0.96184 0.84731 0.98410 1.21574 0.94801 0.99269 0.96602 1.21422 1.00737 0.90851 0.98398 1.21644 0.92317 1.01960 0.95511 1.19720 0.98385 0.92273 1.03544 1.18975 0.84179 0.83866 0.79723 1.90764 1.27353 1.84794 1.44823 1.45687 1.29105 1.05469 1.54638 1.21754 0.95396 0.86917 0.95775 1.21355 0.91848 0.85146 0.97505 0.92632 1.22617 0.95605 0.97027 0.99821 1.22869 0.96170 0.96817 1.01167 1.21337 0.88352 0.97332 0.88442 1.44775 1.17928 1.33185 1.37626 1.19346 0.93063 1.22048 1.02306 0.90645 1.25656 1.01819 1.01436 0.96604 1.70149 1.38468 1.36947 1.13814 0.85113 0.79741 0.77659 0.77481 1.19351 1.21146 1.22342 1.21206 0.99916 0.92195 0.98466 0.89016 0.93855 0.94385 0.85612 0.85032 0.72550 0.80796 0.80394 0.82844 0.74485 0.94706 0.95135 0.87136 0.91930 0.90786 0.89848 0.93926 0.99442 0.94290 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.20 71.98 0.66 -1.34 16 2 C -0.13 -1.13 6.42 29.85 0.19 -0.94 16 3 C 0.50 9.55 7.67 87.66 0.67 10.23 16 4 O -0.57 -18.76 13.46 -3.04 -0.04 -18.81 16 5 N -0.66 -8.93 5.33 -303.60 -1.62 -10.55 16 6 C 0.12 2.39 6.28 38.11 0.24 2.63 16 7 C -0.10 -1.12 9.96 22.44 0.22 -0.90 16 8 C -0.10 -1.02 10.02 22.21 0.22 -0.80 16 9 C -0.10 -1.65 9.54 22.54 0.21 -1.44 16 10 C -0.14 -3.88 5.87 -20.10 -0.12 -4.00 16 11 C 0.54 20.45 7.77 86.79 0.67 21.12 16 12 O -0.60 -29.42 16.34 -3.90 -0.06 -29.48 16 13 N -0.70 -22.63 5.27 -465.96 -2.46 -25.09 16 14 C 0.13 5.39 5.07 86.38 0.44 5.83 16 15 C 0.15 5.90 3.22 45.34 0.15 6.05 16 16 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 17 C -0.11 -3.47 6.09 31.78 0.19 -3.28 16 18 C -0.13 -4.59 7.08 31.98 0.23 -4.36 16 19 C 0.17 8.48 5.45 86.85 0.47 8.95 16 20 N -0.61 -31.63 3.13 -668.24 -2.09 -33.72 16 21 C -0.24 -13.77 9.78 84.03 0.82 -12.95 16 22 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 23 C -0.06 -3.64 5.47 84.86 0.46 -3.18 16 24 N -0.95 -58.51 10.49 21.65 0.23 -58.28 16 25 Si 0.97 48.15 29.55 68.60 2.03 50.17 16 26 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 28 H -0.30 -14.89 7.11 99.48 0.71 -14.19 16 29 C -0.10 -2.91 8.24 22.66 0.19 -2.72 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.04 0.77 8.10 -2.39 -0.02 0.75 16 32 H 0.04 0.72 8.10 -2.39 -0.02 0.70 16 33 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.43 1.41 8.82 -92.71 -0.82 0.59 16 36 H 0.17 0.37 8.06 -2.91 -0.02 0.34 16 37 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 38 H 0.15 1.80 6.40 -2.91 -0.02 1.78 16 39 H 0.42 9.51 6.36 -92.70 -0.59 8.92 16 40 H 0.03 1.68 8.08 -2.39 -0.02 1.66 16 41 H 0.03 1.49 7.93 -2.39 -0.02 1.47 16 42 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.06 1.97 7.81 -2.38 -0.02 1.95 16 44 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 46 H 0.04 2.38 6.76 -2.38 -0.02 2.37 16 47 H -0.01 -0.70 8.10 -2.39 -0.02 -0.72 16 48 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 49 H 0.10 4.13 5.86 -2.91 -0.02 4.12 16 Total: -1.00 -94.37 399.61 1.49 -92.89 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -0.43 Total: 13.98 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 5.93 Total: 18.89 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -5.94 Total: -127.64 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -0.10 Total: -48.29 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.17 kcal Total: -94.37 1.49 -92.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027918357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.819 kcal (2) G-P(sol) polarization free energy of solvation -94.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds