Wall clock time and date at job start Wed Apr 1 2020 04:56:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.50701 * 109.47044 * 2 1
4 4 O 1.21290 * 119.99939 * 0.02562 * 3 2 1
5 5 N 1.34777 * 119.99837 * 179.97438 * 3 2 1
6 6 C 1.39959 * 119.99864 * 185.28441 * 5 3 2
7 7 C 1.38992 * 119.99719 * 214.81622 * 6 5 3
8 8 C 1.38210 * 120.22146 * 180.02562 * 7 6 5
9 9 C 1.38025 * 120.22490 * 359.96842 * 8 7 6
10 10 C 1.39575 * 119.99066 * 0.02562 * 9 8 7
11 11 C 1.47864 * 120.10947 * 179.97438 * 10 9 8
12 12 O 1.21548 * 120.00526 * 215.03799 * 11 10 9
13 13 N 1.34779 * 119.99734 * 35.03898 * 11 10 9
14 14 C 1.46501 * 119.99888 * 5.82669 * 13 11 10
15 15 C 1.46502 * 120.00042 * 185.82944 * 13 11 10
16 16 H 1.09000 * 110.91496 * 3.89696 * 15 13 11
17 17 C 1.55168 * 111.00197 * 239.99922 * 15 13 11
18 18 C 1.54319 * 102.94252 * 206.42283 * 17 15 13
19 19 N 1.47029 * 107.27138 * 22.19357 * 18 17 15
20 20 C 1.36932 * 125.64792 * 181.02253 * 19 18 17
21 21 H 1.08003 * 119.99761 * 174.91498 * 20 19 18
22 22 C 1.38806 * 120.00393 * 354.92196 * 20 19 18
23 23 N 1.31620 * 120.00190 * 214.20479 * 22 20 19
24 24 Si 1.86805 * 119.99972 * 34.47062 * 22 20 19
25 25 H 1.48501 * 109.47203 * 173.98898 * 24 22 20
26 26 H 1.48498 * 109.47172 * 293.98803 * 24 22 20
27 27 H 1.48493 * 109.46752 * 53.98950 * 24 22 20
28 28 C 1.47426 * 108.70114 * 1.28795 * 19 18 17
29 29 C 1.38590 * 120.00179 * 35.08645 * 6 5 3
30 30 H 1.08993 * 109.47294 * 179.97438 * 1 2 3
31 31 H 1.09006 * 109.46961 * 299.99793 * 1 2 3
32 32 H 1.09004 * 109.47203 * 59.99804 * 1 2 3
33 33 H 1.08999 * 109.47245 * 240.00479 * 2 1 3
34 34 H 1.09004 * 109.47203 * 120.00195 * 2 1 3
35 35 H 0.96997 * 119.99886 * 5.28939 * 5 3 2
36 36 H 1.07999 * 119.89197 * 359.96757 * 7 6 5
37 37 H 1.08000 * 119.89121 * 179.97438 * 8 7 6
38 38 H 1.07994 * 120.00386 * 180.02562 * 9 8 7
39 39 H 1.08995 * 109.47417 * 274.69115 * 14 13 11
40 40 H 1.08998 * 109.47124 * 34.69869 * 14 13 11
41 41 H 1.09000 * 109.47137 * 154.69295 * 14 13 11
42 42 H 1.09003 * 110.71839 * 88.06001 * 17 15 13
43 43 H 1.08997 * 110.86840 * 324.85903 * 17 15 13
44 44 H 1.08997 * 109.88279 * 262.78075 * 18 17 15
45 45 H 1.08998 * 109.88636 * 141.61018 * 18 17 15
46 46 H 0.97000 * 120.00047 * 5.27096 * 23 22 20
47 47 H 1.08992 * 110.36882 * 94.48112 * 28 19 18
48 48 H 1.09006 * 110.36402 * 216.80893 * 28 19 18
49 49 H 1.08000 * 120.11320 * 0.02562 * 29 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 8 1.2441 2.3427 0.0005
5 7 3.3574 1.6671 0.0005
6 6 3.8248 2.9816 0.1122
7 6 4.9770 3.3690 -0.5618
8 6 5.4430 4.6658 -0.4545
9 6 4.7670 5.5849 0.3223
10 6 3.6090 5.2057 1.0029
11 6 2.8831 6.1881 1.8362
12 8 2.3367 5.8299 2.8612
13 7 2.8272 7.4809 1.4592
14 6 3.3741 7.8902 0.1631
15 6 2.2196 8.4768 2.3454
16 1 1.9252 8.0262 3.2932
17 6 1.0118 9.1684 1.6594
18 6 0.9556 10.5417 2.3611
19 7 2.2915 10.8028 2.9169
20 6 2.6546 11.9111 3.6345
21 1 3.6406 11.9726 4.0710
22 6 1.7555 12.9554 3.8011
23 7 2.1902 14.1968 3.8498
24 14 -0.0709 12.5984 3.9639
25 1 -0.7954 13.8567 4.2755
26 1 -0.5811 12.0366 2.6875
27 1 -0.2880 11.6182 5.0580
28 6 3.1770 9.6769 2.5682
29 6 3.1420 3.8954 0.8992
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8901
32 1 -0.3634 0.5139 -0.8900
33 1 1.8934 -0.5137 -0.8900
34 1 1.8934 -0.5139 0.8900
35 1 3.9871 0.9333 -0.0765
36 1 5.5105 2.6542 -1.1708
37 1 6.3390 4.9609 -0.9802
38 1 5.1341 6.5973 0.4033
39 1 4.4429 8.0791 0.2630
40 1 3.2118 7.0969 -0.5665
41 1 2.8742 8.7992 -0.1714
42 1 0.0944 8.6070 1.8365
43 1 1.1886 9.2883 0.5906
44 1 0.2184 10.5181 3.1636
45 1 0.6965 11.3164 1.6395
46 1 3.1280 14.3887 3.6930
47 1 3.7305 9.8981 1.6557
48 1 3.8638 9.4665 3.3880
49 1 2.2492 3.5950 1.4275
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001033126232.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:56:16
Heat of formation + Delta-G solvation = 7.350631 kcal
Electronic energy + Delta-G solvation = -30135.054258 eV
Core-core repulsion = 26063.837704 eV
Total energy + Delta-G solvation = -4071.216554 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.43 seconds
Orbital eigenvalues (eV)
-41.07044 -40.13862 -38.55512 -37.46698 -35.38301 -34.82298 -33.32034 -32.42334
-31.37626 -30.14188 -29.33874 -28.10528 -26.97861 -25.27520 -24.56386 -23.34974
-22.64917 -21.07878 -20.64994 -20.45309 -19.28756 -18.02001 -17.66563 -17.42824
-16.87348 -16.47271 -16.20070 -15.92117 -15.44811 -15.12261 -14.81984 -14.48901
-14.27262 -13.91627 -13.74277 -13.43415 -13.36837 -13.23825 -13.00101 -12.86714
-12.77299 -12.51881 -12.39251 -12.22407 -11.98265 -11.94104 -11.69767 -11.61140
-11.29122 -11.01885 -10.95426 -10.77166 -10.51520 -10.24552 -9.96926 -9.82160
-9.66667 -9.21520 -9.04801 -8.51608 -8.47535 -8.29227 -7.09844 -6.36235
-3.11125 0.64965 1.01320 2.15220 2.54834 2.74765 3.02644 3.48493
3.58241 3.60498 3.77166 4.14387 4.36098 4.53936 4.57713 4.59540
4.69259 4.73655 4.84992 4.99219 5.01178 5.12651 5.14760 5.16489
5.18072 5.33406 5.35078 5.41972 5.47449 5.48288 5.56025 5.58999
5.70415 5.80973 5.87518 5.91008 5.94504 5.99561 6.06766 6.13459
6.26033 6.44136 6.52024 6.60719 6.61362 6.80082 6.83992 6.89823
7.46215 7.68457 7.72073 8.20165 8.35186 9.03535 9.61275 10.27750
11.11704
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.018940 B = 0.002340 C = 0.002148
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1477.996249 B =11963.892327 C =13034.453113
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.141 4.141
3 C 0.507 3.493
4 O -0.512 6.512
5 N -0.677 5.677
6 C 0.135 3.865
7 C -0.126 4.126
8 C -0.107 4.107
9 C -0.107 4.107
10 C -0.105 4.105
11 C 0.558 3.442
12 O -0.534 6.534
13 N -0.596 5.596
14 C 0.072 3.928
15 C 0.121 3.879
16 H 0.110 0.890
17 C -0.140 4.140
18 C 0.123 3.877
19 N -0.607 5.607
20 C -0.341 4.341
21 H 0.080 0.920
22 C -0.009 4.009
23 N -0.902 5.902
24 Si 1.032 2.968
25 H -0.298 1.298
26 H -0.277 1.277
27 H -0.296 1.296
28 C 0.135 3.865
29 C -0.066 4.066
30 H 0.063 0.937
31 H 0.064 0.936
32 H 0.063 0.937
33 H 0.095 0.905
34 H 0.097 0.903
35 H 0.411 0.589
36 H 0.128 0.872
37 H 0.133 0.867
38 H 0.140 0.860
39 H 0.061 0.939
40 H 0.071 0.929
41 H 0.080 0.920
42 H 0.070 0.930
43 H 0.071 0.929
44 H 0.029 0.971
45 H 0.046 0.954
46 H 0.265 0.735
47 H 0.030 0.970
48 H 0.045 0.955
49 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.948 -30.611 -14.348 34.326
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.181 4.181
3 C 0.295 3.705
4 O -0.386 6.386
5 N -0.323 5.323
6 C 0.042 3.958
7 C -0.146 4.146
8 C -0.126 4.126
9 C -0.125 4.125
10 C -0.108 4.108
11 C 0.347 3.653
12 O -0.411 6.411
13 N -0.327 5.327
14 C -0.070 4.070
15 C 0.017 3.983
16 H 0.127 0.873
17 C -0.179 4.179
18 C -0.002 4.002
19 N -0.335 5.335
20 C -0.467 4.467
21 H 0.098 0.902
22 C -0.211 4.211
23 N -0.541 5.541
24 Si 0.863 3.137
25 H -0.226 1.226
26 H -0.204 1.204
27 H -0.224 1.224
28 C 0.008 3.992
29 C -0.087 4.087
30 H 0.082 0.918
31 H 0.083 0.917
32 H 0.082 0.918
33 H 0.114 0.886
34 H 0.116 0.884
35 H 0.247 0.753
36 H 0.146 0.854
37 H 0.151 0.849
38 H 0.158 0.842
39 H 0.079 0.921
40 H 0.090 0.910
41 H 0.099 0.901
42 H 0.089 0.911
43 H 0.090 0.910
44 H 0.046 0.954
45 H 0.063 0.937
46 H 0.074 0.926
47 H 0.048 0.952
48 H 0.063 0.937
49 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 3.592 -29.367 -13.442 32.496
hybrid contribution 1.919 -1.165 -0.292 2.264
sum 5.511 -30.532 -13.735 33.929
Atomic orbital electron populations
1.21564 0.92538 1.01940 1.03756 1.21643 0.99115 0.92713 1.04635
1.21096 0.81523 0.92544 0.75345 1.90791 1.54888 1.46372 1.46564
1.43585 1.08012 1.06983 1.73752 1.17558 0.95632 0.85142 0.97502
1.21044 0.96883 0.97148 0.99549 1.20908 1.00041 0.92430 0.99199
1.21732 0.94363 1.00778 0.95673 1.19800 0.97110 0.94118 0.99798
1.18302 0.79885 0.81937 0.85223 1.90779 1.45780 1.78808 1.25722
1.47649 1.59034 1.06960 1.19069 1.22073 0.98820 1.01773 0.84357
1.22595 0.93829 0.88072 0.93758 0.87252 1.22964 0.98039 0.96914
0.99964 1.21862 0.88842 0.93676 0.95807 1.44776 1.05349 1.20481
1.62870 1.19938 1.01186 0.92444 1.33130 0.90215 1.25578 1.04786
0.91474 0.99237 1.70931 1.17247 1.17850 1.48064 0.84483 0.77698
0.74386 0.77102 1.22579 1.20423 1.22362 1.21803 0.92775 0.86257
0.98368 1.21120 1.00285 0.91482 0.95809 0.91758 0.91663 0.91805
0.88632 0.88439 0.75274 0.85391 0.84883 0.84204 0.92056 0.90996
0.90137 0.91114 0.91042 0.95379 0.93651 0.92574 0.95209 0.93685
0.84113
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.86 9.20 37.16 0.34 -0.52 16
2 C -0.14 -0.66 6.42 -27.88 -0.18 -0.84 16
3 C 0.51 4.44 7.55 -10.98 -0.08 4.36 16
4 O -0.51 -6.99 13.79 5.55 0.08 -6.92 16
5 N -0.68 -4.73 5.34 -9.89 -0.05 -4.78 16
6 C 0.14 1.32 6.24 -83.74 -0.52 0.79 16
7 C -0.13 -0.94 9.96 -39.31 -0.39 -1.33 16
8 C -0.11 -0.83 10.02 -39.67 -0.40 -1.22 16
9 C -0.11 -1.07 7.81 -39.16 -0.31 -1.37 16
10 C -0.10 -1.39 5.17 -104.99 -0.54 -1.93 16
11 C 0.56 9.25 7.37 -12.32 -0.09 9.16 16
12 O -0.53 -10.84 16.22 5.32 0.09 -10.75 16
13 N -0.60 -9.21 2.91 -172.44 -0.50 -9.71 16
14 C 0.07 0.84 7.45 59.85 0.45 1.29 16
15 C 0.12 2.24 3.45 -65.66 -0.23 2.01 16
16 H 0.11 2.25 7.05 -51.93 -0.37 1.88 16
17 C -0.14 -2.54 6.49 -24.89 -0.16 -2.70 16
18 C 0.12 2.78 4.58 -3.06 -0.01 2.77 16
19 N -0.61 -15.25 3.38 -169.94 -0.57 -15.83 16
20 C -0.34 -9.90 10.39 -15.06 -0.16 -10.06 16
21 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16
22 C -0.01 -0.26 5.42 -17.43 -0.09 -0.35 16
23 N -0.90 -28.29 13.70 55.49 0.76 -27.53 16
24 Si 1.03 26.58 25.17 -169.99 -4.28 22.30 16
25 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16
26 H -0.28 -6.51 5.09 56.52 0.29 -6.22 16
27 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16
28 C 0.14 2.80 6.79 -2.41 -0.02 2.78 16
29 C -0.07 -0.87 8.21 -38.98 -0.32 -1.19 16
30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
31 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16
32 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16
33 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16
34 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16
35 H 0.41 1.21 8.82 -40.82 -0.36 0.85 16
36 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16
37 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16
38 H 0.14 1.24 5.22 -52.49 -0.27 0.97 16
39 H 0.06 0.60 6.39 -51.93 -0.33 0.27 16
40 H 0.07 0.73 6.50 -51.93 -0.34 0.39 16
41 H 0.08 0.96 6.38 -51.93 -0.33 0.62 16
42 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16
43 H 0.07 1.15 6.46 -51.93 -0.34 0.81 16
44 H 0.03 0.67 4.72 -51.93 -0.25 0.43 16
45 H 0.05 1.06 6.84 -51.93 -0.36 0.71 16
46 H 0.26 8.17 8.73 -40.82 -0.36 7.82 16
47 H 0.03 0.58 6.97 -51.93 -0.36 0.22 16
48 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16
49 H 0.14 2.20 6.48 -52.49 -0.34 1.86 16
LS Contribution 383.97 15.07 5.79 5.79
Total: -1.00 -37.86 383.97 -8.54 -46.40
By element:
Atomic # 1 Polarization: 6.51 SS G_CDS: -7.13 Total: -0.61 kcal
Atomic # 6 Polarization: 4.36 SS G_CDS: -2.72 Total: 1.65 kcal
Atomic # 7 Polarization: -57.49 SS G_CDS: -0.37 Total: -57.86 kcal
Atomic # 8 Polarization: -17.83 SS G_CDS: 0.16 Total: -17.67 kcal
Atomic # 14 Polarization: 26.58 SS G_CDS: -4.28 Total: 22.30 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -37.86 -8.54 -46.40 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033126232.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.752 kcal
(2) G-P(sol) polarization free energy of solvation -37.861 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.891 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.401 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.351 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.43 seconds