Wall clock time and date at job start Wed Apr 1 2020 04:56:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.50701 * 109.47044 * 2 1
4 4 O 1.21290 * 119.99939 * 0.02562 * 3 2 1
5 5 N 1.34777 * 119.99837 * 179.97438 * 3 2 1
6 6 C 1.39959 * 119.99864 * 185.28441 * 5 3 2
7 7 C 1.38992 * 119.99719 * 214.81622 * 6 5 3
8 8 C 1.38210 * 120.22146 * 180.02562 * 7 6 5
9 9 C 1.38025 * 120.22490 * 359.96842 * 8 7 6
10 10 C 1.39575 * 119.99066 * 0.02562 * 9 8 7
11 11 C 1.47864 * 120.10947 * 179.97438 * 10 9 8
12 12 O 1.21548 * 120.00526 * 215.03799 * 11 10 9
13 13 N 1.34779 * 119.99734 * 35.03898 * 11 10 9
14 14 C 1.46501 * 119.99888 * 5.82669 * 13 11 10
15 15 C 1.46502 * 120.00042 * 185.82944 * 13 11 10
16 16 H 1.09000 * 110.91496 * 3.89696 * 15 13 11
17 17 C 1.55168 * 111.00197 * 239.99922 * 15 13 11
18 18 C 1.54319 * 102.94252 * 206.42283 * 17 15 13
19 19 N 1.47029 * 107.27138 * 22.19357 * 18 17 15
20 20 C 1.36932 * 125.64792 * 181.02253 * 19 18 17
21 21 H 1.08003 * 119.99761 * 174.91498 * 20 19 18
22 22 C 1.38806 * 120.00393 * 354.92196 * 20 19 18
23 23 N 1.31620 * 120.00190 * 214.20479 * 22 20 19
24 24 Si 1.86805 * 119.99972 * 34.47062 * 22 20 19
25 25 H 1.48501 * 109.47203 * 173.98898 * 24 22 20
26 26 H 1.48498 * 109.47172 * 293.98803 * 24 22 20
27 27 H 1.48493 * 109.46752 * 53.98950 * 24 22 20
28 28 C 1.47426 * 108.70114 * 1.28795 * 19 18 17
29 29 C 1.38590 * 120.00179 * 35.08645 * 6 5 3
30 30 H 1.08993 * 109.47294 * 179.97438 * 1 2 3
31 31 H 1.09006 * 109.46961 * 299.99793 * 1 2 3
32 32 H 1.09004 * 109.47203 * 59.99804 * 1 2 3
33 33 H 1.08999 * 109.47245 * 240.00479 * 2 1 3
34 34 H 1.09004 * 109.47203 * 120.00195 * 2 1 3
35 35 H 0.96997 * 119.99886 * 5.28939 * 5 3 2
36 36 H 1.07999 * 119.89197 * 359.96757 * 7 6 5
37 37 H 1.08000 * 119.89121 * 179.97438 * 8 7 6
38 38 H 1.07994 * 120.00386 * 180.02562 * 9 8 7
39 39 H 1.08995 * 109.47417 * 274.69115 * 14 13 11
40 40 H 1.08998 * 109.47124 * 34.69869 * 14 13 11
41 41 H 1.09000 * 109.47137 * 154.69295 * 14 13 11
42 42 H 1.09003 * 110.71839 * 88.06001 * 17 15 13
43 43 H 1.08997 * 110.86840 * 324.85903 * 17 15 13
44 44 H 1.08997 * 109.88279 * 262.78075 * 18 17 15
45 45 H 1.08998 * 109.88636 * 141.61018 * 18 17 15
46 46 H 0.97000 * 120.00047 * 5.27096 * 23 22 20
47 47 H 1.08992 * 110.36882 * 94.48112 * 28 19 18
48 48 H 1.09006 * 110.36402 * 216.80893 * 28 19 18
49 49 H 1.08000 * 120.11320 * 0.02562 * 29 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 8 1.2441 2.3427 0.0005
5 7 3.3574 1.6671 0.0005
6 6 3.8248 2.9816 0.1122
7 6 4.9770 3.3690 -0.5618
8 6 5.4430 4.6658 -0.4545
9 6 4.7670 5.5849 0.3223
10 6 3.6090 5.2057 1.0029
11 6 2.8831 6.1881 1.8362
12 8 2.3367 5.8299 2.8612
13 7 2.8272 7.4809 1.4592
14 6 3.3741 7.8902 0.1631
15 6 2.2196 8.4768 2.3454
16 1 1.9252 8.0262 3.2932
17 6 1.0118 9.1684 1.6594
18 6 0.9556 10.5417 2.3611
19 7 2.2915 10.8028 2.9169
20 6 2.6546 11.9111 3.6345
21 1 3.6406 11.9726 4.0710
22 6 1.7555 12.9554 3.8011
23 7 2.1902 14.1968 3.8498
24 14 -0.0709 12.5984 3.9639
25 1 -0.7954 13.8567 4.2755
26 1 -0.5811 12.0366 2.6875
27 1 -0.2880 11.6182 5.0580
28 6 3.1770 9.6769 2.5682
29 6 3.1420 3.8954 0.8992
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8901
32 1 -0.3634 0.5139 -0.8900
33 1 1.8934 -0.5137 -0.8900
34 1 1.8934 -0.5139 0.8900
35 1 3.9871 0.9333 -0.0765
36 1 5.5105 2.6542 -1.1708
37 1 6.3390 4.9609 -0.9802
38 1 5.1341 6.5973 0.4033
39 1 4.4429 8.0791 0.2630
40 1 3.2118 7.0969 -0.5665
41 1 2.8742 8.7992 -0.1714
42 1 0.0944 8.6070 1.8365
43 1 1.1886 9.2883 0.5906
44 1 0.2184 10.5181 3.1636
45 1 0.6965 11.3164 1.6395
46 1 3.1280 14.3887 3.6930
47 1 3.7305 9.8981 1.6557
48 1 3.8638 9.4665 3.3880
49 1 2.2492 3.5950 1.4275
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001033126232.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:56:15
Heat of formation + Delta-G solvation = -20.423404 kcal
Electronic energy + Delta-G solvation = -30136.258631 eV
Core-core repulsion = 26063.837704 eV
Total energy + Delta-G solvation = -4072.420927 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.20 seconds
Orbital eigenvalues (eV)
-41.91713 -41.19661 -39.63577 -38.87504 -36.59174 -35.84108 -34.45164 -33.80501
-32.34542 -31.38145 -30.66479 -29.64467 -28.09137 -26.20074 -25.80585 -24.73106
-23.32345 -22.68265 -22.01517 -21.27315 -20.58686 -19.56603 -18.98436 -18.36793
-17.92651 -17.38412 -17.25016 -16.82869 -16.72908 -16.44708 -15.92269 -15.51203
-15.45905 -15.21040 -15.12923 -14.71327 -14.46571 -14.37628 -14.28030 -14.09685
-13.87206 -13.73555 -13.27488 -13.21273 -13.10661 -13.01163 -12.79830 -12.70959
-12.57305 -12.41211 -12.32322 -12.06043 -11.89066 -11.62806 -11.55391 -11.09724
-10.99519 -10.93349 -10.48643 -10.03591 -9.77428 -9.22255 -9.19554 -8.70763
-5.38718 -0.16069 0.25506 1.42109 1.47795 1.51311 1.62863 1.71272
1.79469 2.06018 2.53908 2.76737 2.92197 3.31251 3.37503 3.67275
3.70062 3.74375 3.90660 3.96751 4.02815 4.13231 4.17556 4.20129
4.23931 4.29548 4.35241 4.42116 4.48065 4.58544 4.66648 4.71232
4.78122 4.81068 4.86153 4.88855 4.95601 5.02046 5.03142 5.11242
5.18311 5.26975 5.29489 5.34710 5.39643 5.45408 5.58137 5.91775
6.06721 6.24512 6.39054 6.78029 6.95513 7.12855 7.43742 8.09854
8.78174
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.018940 B = 0.002340 C = 0.002148
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1477.996249 B =11963.892327 C =13034.453113
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.131 4.131
3 C 0.499 3.501
4 O -0.571 6.571
5 N -0.662 5.662
6 C 0.129 3.871
7 C -0.106 4.106
8 C -0.095 4.095
9 C -0.105 4.105
10 C -0.127 4.127
11 C 0.552 3.448
12 O -0.587 6.587
13 N -0.592 5.592
14 C 0.066 3.934
15 C 0.133 3.867
16 H 0.082 0.918
17 C -0.126 4.126
18 C 0.116 3.884
19 N -0.627 5.627
20 C -0.335 4.335
21 H 0.052 0.948
22 C -0.060 4.060
23 N -0.935 5.935
24 Si 1.072 2.928
25 H -0.305 1.305
26 H -0.239 1.239
27 H -0.295 1.295
28 C 0.137 3.863
29 C -0.093 4.093
30 H 0.089 0.911
31 H 0.037 0.963
32 H 0.046 0.954
33 H 0.132 0.868
34 H 0.122 0.878
35 H 0.433 0.567
36 H 0.172 0.828
37 H 0.174 0.826
38 H 0.152 0.848
39 H 0.085 0.915
40 H 0.091 0.909
41 H 0.082 0.918
42 H 0.083 0.917
43 H 0.099 0.901
44 H 0.021 0.979
45 H 0.042 0.958
46 H 0.253 0.747
47 H 0.053 0.947
48 H 0.031 0.969
49 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.614 -33.897 -17.830 39.050
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.171 4.171
3 C 0.289 3.711
4 O -0.449 6.449
5 N -0.310 5.310
6 C 0.034 3.966
7 C -0.126 4.126
8 C -0.113 4.113
9 C -0.123 4.123
10 C -0.131 4.131
11 C 0.343 3.657
12 O -0.468 6.468
13 N -0.322 5.322
14 C -0.075 4.075
15 C 0.028 3.972
16 H 0.100 0.900
17 C -0.165 4.165
18 C -0.009 4.009
19 N -0.355 5.355
20 C -0.462 4.462
21 H 0.070 0.930
22 C -0.257 4.257
23 N -0.576 5.576
24 Si 0.898 3.102
25 H -0.233 1.233
26 H -0.164 1.164
27 H -0.222 1.222
28 C 0.011 3.989
29 C -0.115 4.115
30 H 0.108 0.892
31 H 0.057 0.943
32 H 0.065 0.935
33 H 0.149 0.851
34 H 0.140 0.860
35 H 0.274 0.726
36 H 0.189 0.811
37 H 0.191 0.809
38 H 0.170 0.830
39 H 0.103 0.897
40 H 0.109 0.891
41 H 0.101 0.899
42 H 0.102 0.898
43 H 0.117 0.883
44 H 0.038 0.962
45 H 0.060 0.940
46 H 0.062 0.938
47 H 0.071 0.929
48 H 0.049 0.951
49 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 5.318 -32.724 -16.985 37.251
hybrid contribution 1.564 -0.248 0.775 1.763
sum 6.882 -32.971 -16.211 37.380
Atomic orbital electron populations
1.21579 0.94042 1.02820 1.01615 1.21714 0.97706 0.90218 1.07432
1.21940 0.81599 0.93656 0.73923 1.90776 1.56425 1.48411 1.49295
1.43511 1.08030 1.06809 1.72629 1.17718 0.96105 0.85694 0.97051
1.21531 0.95196 0.97937 0.97951 1.21390 1.00444 0.91813 0.97702
1.21892 0.93097 1.02042 0.95309 1.19567 0.98763 0.93312 1.01469
1.18971 0.79284 0.82564 0.84902 1.90737 1.48217 1.79717 1.28156
1.47647 1.58664 1.06106 1.19815 1.22380 1.00057 1.02471 0.82618
1.22123 0.93578 0.87770 0.93714 0.90030 1.22900 0.98383 0.94188
1.00982 1.21969 0.87288 0.96031 0.95589 1.44825 1.07416 1.20729
1.62558 1.19823 0.99963 0.93885 1.32573 0.93023 1.26709 1.08360
0.91140 0.99471 1.71022 1.16630 1.18995 1.50966 0.83963 0.73380
0.74014 0.78797 1.23325 1.16358 1.22242 1.21892 0.92566 0.85879
0.98551 1.20942 1.00169 0.92681 0.97659 0.89214 0.94349 0.93519
0.85051 0.85978 0.72639 0.81088 0.80871 0.83030 0.89711 0.89094
0.89890 0.89829 0.88254 0.96180 0.93978 0.93773 0.92921 0.95084
0.88078
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.68 9.20 71.98 0.66 -1.02 16
2 C -0.13 -0.94 6.42 29.85 0.19 -0.74 16
3 C 0.50 8.38 7.55 87.66 0.66 9.05 16
4 O -0.57 -16.45 13.79 -3.06 -0.04 -16.49 16
5 N -0.66 -7.76 5.34 -303.59 -1.62 -9.38 16
6 C 0.13 2.25 6.24 38.11 0.24 2.48 16
7 C -0.11 -1.08 9.96 22.44 0.22 -0.85 16
8 C -0.10 -0.99 10.02 22.21 0.22 -0.77 16
9 C -0.10 -1.79 7.81 22.54 0.18 -1.61 16
10 C -0.13 -3.35 5.17 -20.10 -0.10 -3.46 16
11 C 0.55 18.82 7.37 86.79 0.64 19.46 16
12 O -0.59 -25.50 16.22 -3.87 -0.06 -25.56 16
13 N -0.59 -17.94 2.91 -817.77 -2.38 -20.32 16
14 C 0.07 1.35 7.45 127.77 0.95 2.30 16
15 C 0.13 4.91 3.45 46.46 0.16 5.07 16
16 H 0.08 3.49 7.05 -2.39 -0.02 3.47 16
17 C -0.13 -4.37 6.49 31.79 0.21 -4.16 16
18 C 0.12 5.11 4.58 86.73 0.40 5.50 16
19 N -0.63 -31.64 3.38 -691.55 -2.34 -33.98 16
20 C -0.33 -19.94 10.39 84.03 0.87 -19.07 16
21 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16
22 C -0.06 -3.65 5.42 84.86 0.46 -3.19 16
23 N -0.93 -60.27 13.70 21.65 0.30 -59.98 16
24 Si 1.07 54.27 25.17 68.60 1.73 55.99 16
25 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16
26 H -0.24 -10.59 5.09 99.48 0.51 -10.08 16
27 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16
28 C 0.14 5.66 6.79 86.93 0.59 6.25 16
29 C -0.09 -2.51 8.21 22.66 0.19 -2.33 16
30 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16
31 H 0.04 0.64 8.10 -2.38 -0.02 0.62 16
32 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16
33 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16
34 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16
35 H 0.43 0.89 8.82 -92.71 -0.82 0.07 16
36 H 0.17 0.32 8.06 -2.91 -0.02 0.29 16
37 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16
38 H 0.15 2.15 5.22 -2.91 -0.02 2.14 16
39 H 0.08 1.37 6.39 -2.39 -0.02 1.35 16
40 H 0.09 1.57 6.50 -2.39 -0.02 1.55 16
41 H 0.08 1.69 6.38 -2.39 -0.02 1.68 16
42 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16
43 H 0.10 2.90 6.46 -2.39 -0.02 2.89 16
44 H 0.02 0.94 4.72 -2.39 -0.01 0.93 16
45 H 0.04 1.89 6.84 -2.39 -0.02 1.88 16
46 H 0.25 16.30 8.73 -92.71 -0.81 15.49 16
47 H 0.05 1.96 6.97 -2.39 -0.02 1.94 16
48 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16
49 H 0.10 3.50 6.48 -2.91 -0.02 3.48 16
Total: -1.00 -91.06 383.97 2.25 -88.81
By element:
Atomic # 1 Polarization: 8.07 SS G_CDS: -0.07 Total: 8.00 kcal
Atomic # 6 Polarization: 6.17 SS G_CDS: 6.74 Total: 12.90 kcal
Atomic # 7 Polarization: -117.61 SS G_CDS: -6.04 Total: -123.65 kcal
Atomic # 8 Polarization: -41.95 SS G_CDS: -0.10 Total: -42.05 kcal
Atomic # 14 Polarization: 54.27 SS G_CDS: 1.73 Total: 55.99 kcal
Total: -91.06 2.25 -88.81 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033126232.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.389 kcal
(2) G-P(sol) polarization free energy of solvation -91.061 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.672 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.812 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.423 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.20 seconds