Wall clock time and date at job start Wed Apr 1 2020 04:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 120.00411 * 2 1 4 4 O 1.42900 * 109.46960 * 135.00377 * 3 2 1 5 5 C 1.35647 * 116.99909 * 180.02562 * 4 3 2 6 6 C 1.39347 * 120.53956 * 0.26555 * 5 4 3 7 7 C 1.38304 * 118.43875 * 180.26832 * 6 5 4 8 8 C 1.38761 * 119.44177 * 359.72521 * 7 6 5 9 9 N 1.31376 * 121.07131 * 0.02562 * 8 7 6 10 10 C 1.32852 * 121.69367 * 359.97438 * 9 8 7 11 11 C 1.47830 * 119.78232 * 180.02562 * 10 9 8 12 12 O 1.21563 * 120.00206 * 180.02562 * 11 10 9 13 13 N 1.34778 * 120.00200 * 359.97438 * 11 10 9 14 14 C 1.46499 * 120.00326 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.24504 * 324.65895 * 14 13 11 16 16 C 1.54839 * 109.35822 * 205.00159 * 14 13 11 17 17 C 1.50134 * 110.81390 * 200.92577 * 16 14 13 18 18 C 1.52529 * 105.41354 * 97.68270 * 17 16 14 19 19 C 1.46243 * 114.27473 * 270.59047 * 18 17 16 20 20 N 1.50170 * 107.53210 * 58.41347 * 19 18 17 21 21 C 1.36933 * 120.53876 * 109.56279 * 20 19 18 22 22 H 1.08001 * 119.99952 * 156.67778 * 21 20 19 23 23 C 1.38807 * 120.00199 * 336.68084 * 21 20 19 24 24 N 1.31627 * 120.00085 * 340.30112 * 23 21 20 25 25 Si 1.86797 * 120.00165 * 160.30073 * 23 21 20 26 26 H 1.48498 * 109.47188 * 266.02049 * 25 23 21 27 27 H 1.48503 * 109.47057 * 146.01989 * 25 23 21 28 28 H 1.48494 * 109.47116 * 26.02357 * 25 23 21 29 29 C 1.43436 * 118.92429 * 289.83665 * 20 19 18 30 30 H 1.08004 * 119.99731 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.00287 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.99731 * 180.02562 * 2 1 3 33 33 H 1.08991 * 109.46652 * 15.00059 * 3 2 1 34 34 H 1.09002 * 109.46684 * 255.00400 * 3 2 1 35 35 H 1.08000 * 120.78164 * 359.97438 * 6 5 4 36 36 H 1.08001 * 120.27904 * 179.71019 * 7 6 5 37 37 H 1.08007 * 119.46705 * 179.97438 * 8 7 6 38 38 H 0.96996 * 119.99753 * 359.97438 * 13 11 10 39 39 H 1.09000 * 109.21078 * 80.58180 * 16 14 13 40 40 H 1.08997 * 109.20792 * 321.26207 * 16 14 13 41 41 H 1.08998 * 110.25063 * 338.70831 * 17 16 14 42 42 H 1.09001 * 110.36989 * 216.71618 * 17 16 14 43 43 H 1.08995 * 108.52238 * 149.35470 * 18 17 16 44 44 H 1.08997 * 108.40305 * 31.74399 * 18 17 16 45 45 H 1.08990 * 109.84758 * 298.90085 * 19 18 17 46 46 H 1.08997 * 109.89745 * 177.94930 * 19 18 17 47 47 H 0.96996 * 120.00447 * 179.97438 * 24 23 21 48 48 H 1.08991 * 108.16323 * 213.03339 * 29 20 19 49 49 H 1.09001 * 108.15805 * 329.60206 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2411 0.9526 5 6 3.9078 2.3430 1.0787 6 6 3.6619 3.4772 0.3073 7 6 4.4888 4.5743 0.4671 8 6 5.5267 4.5180 1.3863 9 7 5.7368 3.4396 2.1066 10 6 4.9699 2.3612 1.9888 11 6 5.2441 1.1707 2.8211 12 8 4.5452 0.1816 2.7162 13 7 6.2697 1.1813 3.6954 14 6 6.5419 0.0013 4.5198 15 1 5.5988 -0.4747 4.7883 16 6 7.2829 0.4352 5.8083 17 6 8.0158 -0.7244 6.4184 18 6 9.4573 -0.5908 5.9383 19 6 9.7352 -1.2703 4.6735 20 7 8.8108 -0.6961 3.6388 21 6 9.2965 0.1029 2.6385 22 1 8.7472 0.2053 1.7143 23 6 10.4950 0.7814 2.8122 24 7 10.9678 0.9823 4.0241 25 14 11.4368 1.4092 1.3262 26 1 12.4499 0.4020 0.9206 27 1 12.1166 2.6831 1.6731 28 1 10.4928 1.6416 0.2038 29 6 7.4098 -0.9933 3.7187 30 1 -0.5400 0.9354 0.0004 31 1 -0.5400 -0.9352 0.0004 32 1 1.8499 -0.9354 -0.0004 33 1 1.3856 2.1160 0.2660 34 1 2.4755 1.4867 -0.9927 35 1 2.8478 3.4973 -0.4021 36 1 4.3281 5.4672 -0.1189 37 1 6.1729 5.3744 1.5111 38 1 6.8281 1.9701 3.7783 39 1 6.5585 0.8195 6.5265 40 1 7.9966 1.2218 5.5639 41 1 7.5884 -1.6653 6.0719 42 1 7.9738 -0.6698 7.5063 43 1 10.1165 -1.0005 6.7036 44 1 9.6835 0.4688 5.8191 45 1 9.5529 -2.3396 4.7801 46 1 10.7709 -1.0992 4.3802 47 1 11.8055 1.4560 4.1455 48 1 7.0142 -1.0411 2.7043 49 1 7.2969 -1.9798 4.1684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034485187.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:30 Heat of formation + Delta-G solvation = 20.516992 kcal Electronic energy + Delta-G solvation = -31365.507305 eV Core-core repulsion = 27294.861688 eV Total energy + Delta-G solvation = -4070.645618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.85567 -38.97265 -38.33278 -37.38411 -34.39282 -33.98736 -33.02535 -32.39303 -30.91192 -30.59589 -29.56737 -26.92242 -26.09609 -24.86998 -23.67704 -22.98523 -22.70262 -20.72537 -20.08488 -19.57807 -18.98071 -18.31237 -17.42101 -17.03729 -16.53411 -16.28476 -15.36356 -15.23318 -15.01189 -14.93335 -14.52946 -14.27455 -14.19512 -13.77416 -13.53003 -13.33456 -13.21447 -12.88790 -12.86170 -12.26560 -12.18709 -12.03375 -11.70017 -11.66951 -11.44703 -11.24220 -11.20550 -10.72330 -10.66900 -10.39009 -10.01227 -9.94397 -9.90796 -9.85316 -9.75255 -9.61053 -9.36266 -9.17938 -9.16124 -8.54183 -8.42631 -8.13069 -6.60018 -5.71931 -3.09454 0.73220 1.18983 1.81062 3.13622 3.14782 3.42223 3.49649 3.51657 3.69468 4.08744 4.38540 4.44355 4.57401 4.61798 4.66134 4.77796 4.94752 4.96643 5.11835 5.18066 5.40859 5.48582 5.52240 5.57167 5.59341 5.75136 5.84434 5.86270 6.07016 6.23263 6.25277 6.28966 6.32961 6.36270 6.39428 6.54495 6.63553 6.71623 6.97414 7.02224 7.06535 7.13771 7.16085 7.35045 7.38134 7.68813 7.80305 7.83914 8.07229 8.32720 8.50982 8.90519 9.27618 9.94719 10.47823 11.34949 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.003664 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.990223 B = 7640.074429 C = 8838.318067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.146 4.146 3 C 0.078 3.922 4 O -0.264 6.264 5 C 0.133 3.867 6 C -0.180 4.180 7 C -0.114 4.114 8 C 0.058 3.942 9 N -0.412 5.412 10 C 0.058 3.942 11 C 0.565 3.435 12 O -0.533 6.533 13 N -0.681 5.681 14 C 0.117 3.883 15 H 0.072 0.928 16 C -0.110 4.110 17 C -0.112 4.112 18 C -0.130 4.130 19 C 0.165 3.835 20 N -0.582 5.582 21 C -0.235 4.235 22 H 0.063 0.937 23 C 0.003 3.997 24 N -0.900 5.900 25 Si 0.896 3.104 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.282 1.282 29 C 0.151 3.849 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.124 0.876 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.164 0.836 38 H 0.410 0.590 39 H 0.038 0.962 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.024 0.976 44 H 0.101 0.899 45 H 0.004 0.996 46 H 0.089 0.911 47 H 0.251 0.749 48 H 0.037 0.963 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.324 5.201 -4.621 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.164 4.164 3 C 0.002 3.998 4 O -0.174 6.174 5 C 0.082 3.918 6 C -0.207 4.207 7 C -0.134 4.134 8 C -0.102 4.102 9 N -0.123 5.123 10 C -0.082 4.082 11 C 0.348 3.652 12 O -0.410 6.410 13 N -0.330 5.330 14 C 0.010 3.990 15 H 0.090 0.910 16 C -0.148 4.148 17 C -0.150 4.150 18 C -0.169 4.169 19 C 0.041 3.959 20 N -0.303 5.303 21 C -0.365 4.365 22 H 0.081 0.919 23 C -0.195 4.195 24 N -0.546 5.546 25 Si 0.727 3.273 26 H -0.218 1.218 27 H -0.220 1.220 28 H -0.208 1.208 29 C 0.021 3.979 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.142 0.858 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.181 0.819 38 H 0.246 0.754 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.042 0.958 44 H 0.119 0.881 45 H 0.023 0.977 46 H 0.107 0.893 47 H 0.061 0.939 48 H 0.055 0.945 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.955 4.289 -3.941 16.985 hybrid contribution 0.043 1.248 -1.589 2.021 sum -15.912 5.537 -5.530 17.732 Atomic orbital electron populations 1.23825 0.95326 1.02388 0.99877 1.22661 0.95562 0.97938 1.00224 1.21954 0.88232 0.97195 0.92380 1.86468 1.40689 1.33398 1.56868 1.20023 0.91055 0.86791 0.93917 1.21688 1.03023 0.93566 1.02392 1.22154 0.94789 0.98543 0.97957 1.22729 0.97221 0.96391 0.93893 1.67715 1.23890 0.98771 1.21960 1.20965 0.93459 0.95172 0.98622 1.17515 0.81536 0.85678 0.80438 1.90782 1.49616 1.32994 1.67598 1.45844 1.30172 1.18501 1.38521 1.22738 0.98233 0.87057 0.91008 0.91042 1.21667 0.98942 0.99577 0.94612 1.20973 0.98095 0.97940 0.97961 1.21012 0.92928 1.05833 0.97113 1.20168 0.96848 0.91204 0.87638 1.44267 0.99782 1.55733 1.30525 1.19157 1.04515 1.19901 0.92929 0.91891 1.24828 1.00406 0.98380 0.95866 1.69971 1.21485 1.44231 1.18864 0.86366 0.80191 0.77768 0.83022 1.21822 1.21995 1.20773 1.20701 0.85621 0.94159 0.97432 0.88466 0.87418 0.85833 0.91576 0.91006 0.84030 0.84219 0.81913 0.75430 0.94312 0.90088 0.92469 0.93311 0.95755 0.88094 0.97740 0.89333 0.93923 0.94478 0.94573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 14.31 29.02 0.42 -1.00 16 2 C -0.15 -1.49 9.89 -36.02 -0.36 -1.85 16 3 C 0.08 0.82 5.17 36.01 0.19 1.01 16 4 O -0.26 -4.12 8.18 -40.59 -0.33 -4.45 16 5 C 0.13 2.03 6.71 -38.55 -0.26 1.77 16 6 C -0.18 -2.02 9.13 -39.14 -0.36 -2.38 16 7 C -0.11 -1.16 10.10 -39.36 -0.40 -1.56 16 8 C 0.06 0.73 11.17 -17.55 -0.20 0.53 16 9 N -0.41 -6.83 9.54 -9.71 -0.09 -6.92 16 10 C 0.06 1.03 6.76 -82.89 -0.56 0.47 16 11 C 0.56 11.52 7.61 -12.34 -0.09 11.43 16 12 O -0.53 -11.90 14.80 -16.64 -0.25 -12.15 16 13 N -0.68 -13.77 5.07 -53.10 -0.27 -14.04 16 14 C 0.12 2.35 2.91 -66.22 -0.19 2.16 16 15 H 0.07 1.42 7.57 -51.93 -0.39 1.03 16 16 C -0.11 -2.08 5.23 -27.19 -0.14 -2.23 16 17 C -0.11 -2.05 5.76 -28.40 -0.16 -2.22 16 18 C -0.13 -2.76 5.02 -30.18 -0.15 -2.91 16 19 C 0.16 3.84 5.25 -5.20 -0.03 3.81 16 20 N -0.58 -14.26 2.61 -175.41 -0.46 -14.72 16 21 C -0.24 -6.32 9.62 -15.06 -0.14 -6.47 16 22 H 0.06 1.78 7.89 -52.49 -0.41 1.36 16 23 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 24 N -0.90 -24.35 9.43 55.49 0.52 -23.83 16 25 Si 0.90 21.75 29.60 -169.99 -5.03 16.72 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 29 C 0.15 3.37 4.75 -4.92 -0.02 3.34 16 30 H 0.10 0.64 7.90 -52.48 -0.41 0.22 16 31 H 0.11 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.07 0.56 7.40 -51.93 -0.38 0.18 16 34 H 0.07 0.64 7.71 -51.93 -0.40 0.24 16 35 H 0.14 1.11 6.46 -52.49 -0.34 0.77 16 36 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.16 1.57 8.06 -52.48 -0.42 1.15 16 38 H 0.41 8.42 7.77 -40.82 -0.32 8.10 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.75 6.58 -51.93 -0.34 1.41 16 41 H 0.06 1.04 6.28 -51.93 -0.33 0.71 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.10 2.44 5.28 -51.93 -0.27 2.17 16 45 H 0.00 0.10 8.13 -51.93 -0.42 -0.32 16 46 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 47 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 48 H 0.04 0.90 7.80 -51.93 -0.41 0.50 16 49 H 0.04 0.76 6.89 -51.93 -0.36 0.40 16 LS Contribution 389.55 15.07 5.87 5.87 Total: -1.00 -31.17 389.55 -9.79 -40.96 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -7.20 Total: 8.65 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -2.55 Total: 3.91 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.30 Total: -59.51 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.58 Total: -16.60 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.17 -9.79 -40.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034485187.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.474 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds