Wall clock time and date at job start Wed Apr 1 2020 04:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 120.00411 * 2 1 4 4 O 1.42900 * 109.46960 * 135.00377 * 3 2 1 5 5 C 1.35647 * 116.99909 * 180.02562 * 4 3 2 6 6 C 1.39347 * 120.53956 * 0.26555 * 5 4 3 7 7 C 1.38304 * 118.43875 * 180.26832 * 6 5 4 8 8 C 1.38761 * 119.44177 * 359.72521 * 7 6 5 9 9 N 1.31376 * 121.07131 * 0.02562 * 8 7 6 10 10 C 1.32852 * 121.69367 * 359.97438 * 9 8 7 11 11 C 1.47830 * 119.78232 * 180.02562 * 10 9 8 12 12 O 1.21563 * 120.00206 * 180.02562 * 11 10 9 13 13 N 1.34778 * 120.00200 * 359.97438 * 11 10 9 14 14 C 1.46499 * 120.00326 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.24504 * 324.65895 * 14 13 11 16 16 C 1.54839 * 109.35822 * 205.00159 * 14 13 11 17 17 C 1.50134 * 110.81390 * 200.92577 * 16 14 13 18 18 C 1.52529 * 105.41354 * 97.68270 * 17 16 14 19 19 C 1.46243 * 114.27473 * 270.59047 * 18 17 16 20 20 N 1.50170 * 107.53210 * 58.41347 * 19 18 17 21 21 C 1.36933 * 120.53876 * 109.56279 * 20 19 18 22 22 H 1.08001 * 119.99952 * 156.67778 * 21 20 19 23 23 C 1.38807 * 120.00199 * 336.68084 * 21 20 19 24 24 N 1.31627 * 120.00085 * 340.30112 * 23 21 20 25 25 Si 1.86797 * 120.00165 * 160.30073 * 23 21 20 26 26 H 1.48498 * 109.47188 * 266.02049 * 25 23 21 27 27 H 1.48503 * 109.47057 * 146.01989 * 25 23 21 28 28 H 1.48494 * 109.47116 * 26.02357 * 25 23 21 29 29 C 1.43436 * 118.92429 * 289.83665 * 20 19 18 30 30 H 1.08004 * 119.99731 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.00287 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.99731 * 180.02562 * 2 1 3 33 33 H 1.08991 * 109.46652 * 15.00059 * 3 2 1 34 34 H 1.09002 * 109.46684 * 255.00400 * 3 2 1 35 35 H 1.08000 * 120.78164 * 359.97438 * 6 5 4 36 36 H 1.08001 * 120.27904 * 179.71019 * 7 6 5 37 37 H 1.08007 * 119.46705 * 179.97438 * 8 7 6 38 38 H 0.96996 * 119.99753 * 359.97438 * 13 11 10 39 39 H 1.09000 * 109.21078 * 80.58180 * 16 14 13 40 40 H 1.08997 * 109.20792 * 321.26207 * 16 14 13 41 41 H 1.08998 * 110.25063 * 338.70831 * 17 16 14 42 42 H 1.09001 * 110.36989 * 216.71618 * 17 16 14 43 43 H 1.08995 * 108.52238 * 149.35470 * 18 17 16 44 44 H 1.08997 * 108.40305 * 31.74399 * 18 17 16 45 45 H 1.08990 * 109.84758 * 298.90085 * 19 18 17 46 46 H 1.08997 * 109.89745 * 177.94930 * 19 18 17 47 47 H 0.96996 * 120.00447 * 179.97438 * 24 23 21 48 48 H 1.08991 * 108.16323 * 213.03339 * 29 20 19 49 49 H 1.09001 * 108.15805 * 329.60206 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2411 0.9526 5 6 3.9078 2.3430 1.0787 6 6 3.6619 3.4772 0.3073 7 6 4.4888 4.5743 0.4671 8 6 5.5267 4.5180 1.3863 9 7 5.7368 3.4396 2.1066 10 6 4.9699 2.3612 1.9888 11 6 5.2441 1.1707 2.8211 12 8 4.5452 0.1816 2.7162 13 7 6.2697 1.1813 3.6954 14 6 6.5419 0.0013 4.5198 15 1 5.5988 -0.4747 4.7883 16 6 7.2829 0.4352 5.8083 17 6 8.0158 -0.7244 6.4184 18 6 9.4573 -0.5908 5.9383 19 6 9.7352 -1.2703 4.6735 20 7 8.8108 -0.6961 3.6388 21 6 9.2965 0.1029 2.6385 22 1 8.7472 0.2053 1.7143 23 6 10.4950 0.7814 2.8122 24 7 10.9678 0.9823 4.0241 25 14 11.4368 1.4092 1.3262 26 1 12.4499 0.4020 0.9206 27 1 12.1166 2.6831 1.6731 28 1 10.4928 1.6416 0.2038 29 6 7.4098 -0.9933 3.7187 30 1 -0.5400 0.9354 0.0004 31 1 -0.5400 -0.9352 0.0004 32 1 1.8499 -0.9354 -0.0004 33 1 1.3856 2.1160 0.2660 34 1 2.4755 1.4867 -0.9927 35 1 2.8478 3.4973 -0.4021 36 1 4.3281 5.4672 -0.1189 37 1 6.1729 5.3744 1.5111 38 1 6.8281 1.9701 3.7783 39 1 6.5585 0.8195 6.5265 40 1 7.9966 1.2218 5.5639 41 1 7.5884 -1.6653 6.0719 42 1 7.9738 -0.6698 7.5063 43 1 10.1165 -1.0005 6.7036 44 1 9.6835 0.4688 5.8191 45 1 9.5529 -2.3396 4.7801 46 1 10.7709 -1.0992 4.3802 47 1 11.8055 1.4560 4.1455 48 1 7.0142 -1.0411 2.7043 49 1 7.2969 -1.9798 4.1684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034485187.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:28 Heat of formation + Delta-G solvation = 1.971749 kcal Electronic energy + Delta-G solvation = -31366.311488 eV Core-core repulsion = 27294.861688 eV Total energy + Delta-G solvation = -4071.449800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.94616 -40.48720 -39.39349 -39.02708 -35.81321 -35.08900 -34.73080 -33.47290 -32.82418 -31.81551 -31.08534 -27.99516 -27.69802 -26.29653 -25.17837 -24.59830 -23.84265 -22.14475 -21.29864 -20.81347 -20.70699 -19.35588 -18.69730 -18.52423 -18.07665 -17.24552 -16.96483 -16.65692 -16.44070 -16.20799 -15.89924 -15.70351 -15.43305 -15.22241 -15.06414 -14.70924 -14.44166 -14.06675 -14.00007 -13.79055 -13.70794 -13.41058 -13.23570 -13.18290 -13.02379 -12.65909 -12.55912 -12.35631 -12.31078 -11.98284 -11.89975 -11.80079 -11.30115 -11.15892 -11.10685 -10.91661 -10.83634 -10.62017 -10.44548 -10.38736 -9.93630 -9.47048 -8.57385 -7.78748 -5.18222 -0.32469 0.23288 1.09235 1.44703 1.47844 1.54903 1.85057 2.23328 2.34431 2.55244 2.87647 3.29309 3.33880 3.58369 3.62530 3.69134 3.89995 3.96330 4.02909 4.05561 4.16722 4.18283 4.29265 4.43426 4.48805 4.49335 4.54081 4.63292 4.69879 4.84791 4.87714 4.92219 4.94594 4.99054 5.07188 5.21629 5.32908 5.36377 5.41515 5.47568 5.59570 5.61609 5.65244 5.70346 5.78227 5.81845 6.23622 6.24966 6.44750 6.62037 6.90257 7.22623 7.35873 7.93725 8.43741 9.24718 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.003664 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.990223 B = 7640.074429 C = 8838.318067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.182 4.182 3 C 0.072 3.928 4 O -0.300 6.300 5 C 0.124 3.876 6 C -0.171 4.171 7 C -0.087 4.087 8 C 0.047 3.953 9 N -0.445 5.445 10 C 0.006 3.994 11 C 0.558 3.442 12 O -0.565 6.565 13 N -0.685 5.685 14 C 0.123 3.877 15 H 0.075 0.925 16 C -0.098 4.098 17 C -0.103 4.103 18 C -0.122 4.122 19 C 0.167 3.833 20 N -0.592 5.592 21 C -0.244 4.244 22 H 0.040 0.960 23 C -0.031 4.031 24 N -0.908 5.908 25 Si 0.948 3.052 26 H -0.291 1.291 27 H -0.290 1.290 28 H -0.286 1.286 29 C 0.157 3.843 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.182 0.818 36 H 0.192 0.808 37 H 0.190 0.810 38 H 0.406 0.594 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.020 0.980 46 H 0.059 0.941 47 H 0.248 0.752 48 H 0.005 0.995 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.166 7.156 -5.383 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.200 4.200 3 C -0.002 4.002 4 O -0.211 6.211 5 C 0.073 3.927 6 C -0.197 4.197 7 C -0.106 4.106 8 C -0.115 4.115 9 N -0.157 5.157 10 C -0.130 4.130 11 C 0.345 3.655 12 O -0.445 6.445 13 N -0.333 5.333 14 C 0.015 3.985 15 H 0.093 0.907 16 C -0.137 4.137 17 C -0.141 4.141 18 C -0.161 4.161 19 C 0.044 3.956 20 N -0.313 5.313 21 C -0.375 4.375 22 H 0.058 0.942 23 C -0.228 4.228 24 N -0.554 5.554 25 Si 0.779 3.221 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.212 1.212 29 C 0.027 3.973 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.199 0.801 36 H 0.209 0.791 37 H 0.207 0.793 38 H 0.241 0.759 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.089 0.911 45 H 0.038 0.962 46 H 0.077 0.923 47 H 0.057 0.943 48 H 0.024 0.976 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.811 6.222 -4.691 19.441 hybrid contribution 0.511 0.688 -1.461 1.694 sum -17.301 6.910 -6.152 19.619 Atomic orbital electron populations 1.24092 0.94437 1.03979 0.96366 1.22644 0.96499 0.97329 1.03545 1.22254 0.87604 0.98093 0.92240 1.86422 1.41929 1.34317 1.58426 1.20197 0.90473 0.88061 0.93995 1.22163 1.03873 0.92018 1.01676 1.22709 0.92261 0.99573 0.96073 1.23387 0.98432 0.95867 0.93771 1.67588 1.24673 0.99632 1.23795 1.20569 0.96347 0.95104 1.01016 1.18079 0.80780 0.86523 0.80165 1.90729 1.50594 1.34517 1.68617 1.45851 1.30376 1.18180 1.38911 1.22580 0.97813 0.86817 0.91252 0.90746 1.21549 0.98643 0.99084 0.94376 1.20943 0.95703 0.97731 0.99698 1.20824 0.95273 1.03523 0.96460 1.20129 0.95011 0.92194 0.88231 1.44314 1.00734 1.55640 1.30653 1.19038 1.04913 1.20628 0.92886 0.94206 1.25312 1.00851 0.98807 0.97799 1.70101 1.21263 1.44345 1.19644 0.85555 0.78807 0.77196 0.80582 1.21828 1.21692 1.21167 1.20645 0.84884 0.95522 0.96222 0.86263 0.86324 0.88063 0.88986 0.89456 0.80066 0.79072 0.79273 0.75878 0.91905 0.92938 0.91900 0.90264 0.94298 0.91105 0.96195 0.92250 0.94268 0.97635 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 14.31 67.79 0.97 -1.18 16 2 C -0.18 -3.68 9.89 25.65 0.25 -3.43 16 3 C 0.07 1.44 5.17 71.24 0.37 1.81 16 4 O -0.30 -9.56 8.18 -68.63 -0.56 -10.12 16 5 C 0.12 3.77 6.71 22.93 0.15 3.92 16 6 C -0.17 -3.30 9.13 22.55 0.21 -3.09 16 7 C -0.09 -1.40 10.10 22.41 0.23 -1.18 16 8 C 0.05 1.10 11.17 84.89 0.95 2.05 16 9 N -0.45 -15.00 9.54 -184.63 -1.76 -16.76 16 10 C 0.01 0.23 6.76 41.93 0.28 0.52 16 11 C 0.56 24.28 7.61 86.78 0.66 24.94 16 12 O -0.56 -26.95 14.80 17.07 0.25 -26.70 16 13 N -0.68 -29.31 5.07 -440.17 -2.23 -31.54 16 14 C 0.12 5.10 2.91 46.10 0.13 5.23 16 15 H 0.07 3.04 7.57 -2.39 -0.02 3.02 16 16 C -0.10 -3.73 5.23 30.30 0.16 -3.57 16 17 C -0.10 -3.64 5.76 29.51 0.17 -3.47 16 18 C -0.12 -5.15 5.02 28.36 0.14 -5.01 16 19 C 0.17 7.91 5.25 83.58 0.44 8.35 16 20 N -0.59 -29.99 2.61 -708.86 -1.85 -31.84 16 21 C -0.24 -13.68 9.62 84.03 0.81 -12.87 16 22 H 0.04 2.38 7.89 -2.91 -0.02 2.36 16 23 C -0.03 -1.71 4.91 84.86 0.42 -1.30 16 24 N -0.91 -50.25 9.43 21.65 0.20 -50.05 16 25 Si 0.95 45.70 29.60 68.60 2.03 47.73 16 26 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 27 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 28 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 29 C 0.16 7.26 4.75 87.42 0.41 7.67 16 30 H 0.12 1.16 7.90 -2.91 -0.02 1.13 16 31 H 0.12 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.10 2.43 8.06 -2.91 -0.02 2.40 16 33 H 0.09 1.29 7.40 -2.39 -0.02 1.28 16 34 H 0.09 1.39 7.71 -2.39 -0.02 1.37 16 35 H 0.18 1.95 6.46 -2.91 -0.02 1.93 16 36 H 0.19 1.16 8.06 -2.91 -0.02 1.13 16 37 H 0.19 3.15 8.06 -2.91 -0.02 3.13 16 38 H 0.41 17.78 7.77 -92.71 -0.72 17.06 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.05 2.32 6.58 -2.39 -0.02 2.30 16 41 H 0.06 2.17 6.28 -2.39 -0.02 2.16 16 42 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.07 3.48 5.28 -2.39 -0.01 3.47 16 45 H 0.02 0.87 8.13 -2.39 -0.02 0.85 16 46 H 0.06 3.15 6.06 -2.39 -0.01 3.14 16 47 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 48 H 0.01 0.28 7.80 -2.39 -0.02 0.26 16 49 H 0.05 2.10 6.89 -2.39 -0.02 2.08 16 Total: -1.00 -73.45 389.55 3.08 -70.36 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.25 Total: 29.52 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: 6.75 Total: 19.39 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -5.64 Total: -130.19 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.31 Total: -36.82 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -73.45 3.08 -70.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034485187.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.336 kcal (2) G-P(sol) polarization free energy of solvation -73.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds