Wall clock time and date at job start Wed Apr 1 2020 04:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47238 * 2 1 4 4 O 1.42904 * 109.46576 * 240.00440 * 2 1 3 5 5 C 1.35505 * 116.99770 * 269.99403 * 4 2 1 6 6 C 1.39165 * 119.52457 * 179.72939 * 5 4 2 7 7 C 1.37959 * 119.26459 * 179.75318 * 6 5 4 8 8 C 1.40280 * 118.35090 * 0.51504 * 7 6 5 9 9 C 1.47624 * 120.49574 * 179.70637 * 8 7 6 10 10 O 1.21578 * 120.00055 * 204.49138 * 9 8 7 11 11 N 1.34772 * 119.99615 * 24.48893 * 9 8 7 12 12 C 1.46673 * 125.33610 * 185.62866 * 11 9 8 13 13 C 1.53726 * 107.94242 * 180.54729 * 12 11 9 14 14 H 1.09006 * 112.55745 * 139.72149 * 13 12 11 15 15 C 1.53686 * 109.34154 * 265.60209 * 13 12 11 16 16 N 1.47882 * 107.36732 * 127.24832 * 15 13 12 17 17 C 1.36939 * 125.17766 * 181.07970 * 16 15 13 18 18 H 1.08006 * 119.99685 * 185.48275 * 17 16 15 19 19 C 1.38807 * 120.00460 * 5.48437 * 17 16 15 20 20 N 1.31623 * 119.99790 * 354.91425 * 19 17 16 21 21 Si 1.86798 * 120.00100 * 174.91962 * 19 17 16 22 22 H 1.48499 * 109.47173 * 94.99868 * 21 19 17 23 23 H 1.48506 * 109.47048 * 214.99613 * 21 19 17 24 24 H 1.48494 * 109.47378 * 334.99584 * 21 19 17 25 25 C 1.46743 * 109.48734 * 1.48611 * 16 15 13 26 26 C 1.53927 * 106.72316 * 341.24690 * 25 16 15 27 27 H 1.08998 * 113.01316 * 150.83176 * 26 25 16 28 28 C 1.46774 * 125.34397 * 5.32608 * 11 9 8 29 29 C 1.39518 * 119.00979 * 359.72618 * 8 7 6 30 30 N 1.31666 * 120.62825 * 0.02799 * 29 8 7 31 31 H 1.09004 * 109.47515 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47204 * 299.99411 * 1 2 3 33 33 H 1.08997 * 109.47331 * 59.99187 * 1 2 3 34 34 H 1.08997 * 109.47331 * 120.00812 * 2 1 3 35 35 H 1.09007 * 109.47219 * 60.00340 * 3 2 1 36 36 H 1.09003 * 109.47352 * 179.97438 * 3 2 1 37 37 H 1.08997 * 109.47623 * 300.00634 * 3 2 1 38 38 H 1.07999 * 120.36796 * 0.02562 * 6 5 4 39 39 H 1.07990 * 120.82242 * 180.23955 * 7 6 5 40 40 H 1.08999 * 109.77338 * 300.16693 * 12 11 9 41 41 H 1.09002 * 109.77383 * 60.92487 * 12 11 9 42 42 H 1.09007 * 109.75808 * 247.19851 * 15 13 12 43 43 H 1.09003 * 109.76204 * 7.91303 * 15 13 12 44 44 H 0.97006 * 120.00004 * 180.02562 * 20 19 17 45 45 H 1.08999 * 110.00917 * 221.92855 * 25 16 15 46 46 H 1.09006 * 110.00499 * 100.56529 * 25 16 15 47 47 H 1.09001 * 110.02915 * 280.77800 * 28 11 9 48 48 H 1.09002 * 110.02557 * 42.18704 * 28 11 9 49 49 H 1.07997 * 119.69047 * 179.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.2113 -2.0092 -1.0655 6 6 2.6693 -2.7186 -2.1718 7 6 2.8811 -4.0773 -2.0611 8 6 2.6136 -4.6952 -0.8305 9 6 2.8175 -6.1475 -0.6614 10 8 2.1998 -6.7526 0.1933 11 7 3.6883 -6.8025 -1.4545 12 6 3.8962 -8.2543 -1.4687 13 6 4.9846 -8.5667 -2.5084 14 1 5.6756 -9.3394 -2.1711 15 6 4.3216 -8.9138 -3.8508 16 7 4.9310 -8.0459 -4.8815 17 6 4.5913 -8.0385 -6.2081 18 1 5.1514 -7.4333 -6.9055 19 6 3.5272 -8.8089 -6.6564 20 7 2.9083 -9.6223 -5.8271 21 14 2.9736 -8.6912 -8.4366 22 1 3.6244 -9.7651 -9.2293 23 1 1.4986 -8.8481 -8.5077 24 1 3.3577 -7.3670 -8.9879 25 6 5.9613 -7.2025 -4.2646 26 6 5.6834 -7.1998 -2.7506 27 1 6.5844 -7.0651 -2.1522 28 6 4.5729 -6.1756 -2.4438 29 6 2.1515 -3.9168 0.2312 30 7 1.9679 -2.6214 0.0830 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8901 36 1 3.1300 1.4424 0.0005 37 1 1.6767 1.9564 -0.8899 38 1 2.8609 -2.2104 -3.1052 39 1 3.2398 -4.6517 -2.9023 40 1 4.2200 -8.5902 -0.4836 41 1 2.9688 -8.7570 -1.7433 42 1 4.4963 -9.9633 -4.0876 43 1 3.2500 -8.7225 -3.7930 44 1 2.1649 -10.1610 -6.1405 45 1 5.8970 -6.1878 -4.6574 46 1 6.9499 -7.6172 -4.4616 47 1 4.0140 -5.9437 -3.3504 48 1 5.0092 -5.2660 -2.0310 49 1 1.9416 -4.3812 1.1833 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048850292.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:14 Heat of formation + Delta-G solvation = 4.158718 kcal Electronic energy + Delta-G solvation = -30648.775875 eV Core-core repulsion = 26577.420909 eV Total energy + Delta-G solvation = -4071.354966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.10088 -40.10439 -38.63202 -37.72433 -35.01381 -33.58234 -33.03636 -32.17826 -30.83220 -29.94074 -29.45895 -27.59093 -25.84107 -25.69824 -24.40040 -24.03304 -22.67365 -21.43585 -20.18504 -19.92201 -19.33177 -18.68398 -17.42876 -16.90178 -16.63874 -16.19805 -15.97538 -15.43006 -14.92552 -14.77739 -14.64000 -14.39175 -14.18584 -13.93042 -13.60209 -13.44086 -13.21896 -13.04011 -12.69995 -12.63674 -12.57014 -12.51814 -12.20254 -12.05555 -12.02910 -11.53405 -11.40772 -11.23260 -11.04017 -10.94496 -10.84260 -10.47789 -10.21356 -10.13444 -10.08517 -10.05641 -9.87617 -9.69488 -9.59963 -8.72937 -8.64484 -8.34233 -6.90155 -5.78663 -3.12283 0.67634 1.04561 2.72371 2.87135 3.15199 3.36118 3.41869 3.43968 3.69994 4.03832 4.44265 4.48550 4.53996 4.65209 4.72079 4.76317 4.78186 4.85890 4.96391 5.07280 5.19405 5.22072 5.38808 5.43360 5.44608 5.48010 5.51771 5.54481 5.57882 5.61054 5.72660 5.77513 5.82209 5.88535 5.91395 5.94153 6.10033 6.21284 6.21600 6.30517 6.48900 6.51226 6.56993 6.74598 7.01750 7.47341 7.52646 7.57459 7.70501 7.75709 8.18523 8.26767 9.13976 9.75762 10.39500 11.32980 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.002778 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.010534 B =10077.338759 C =11173.573594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.079 3.921 3 C -0.151 4.151 4 O -0.299 6.299 5 C 0.340 3.660 6 C -0.196 4.196 7 C -0.017 4.017 8 C -0.218 4.218 9 C 0.581 3.419 10 O -0.544 6.544 11 N -0.601 5.601 12 C 0.121 3.879 13 C -0.124 4.124 14 H 0.091 0.909 15 C 0.183 3.817 16 N -0.604 5.604 17 C -0.232 4.232 18 H 0.078 0.922 19 C -0.005 4.005 20 N -0.919 5.919 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.146 3.854 26 C -0.111 4.111 27 H 0.091 0.909 28 C 0.107 3.893 29 C 0.199 3.801 30 N -0.546 5.546 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.148 0.852 39 H 0.162 0.838 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.042 0.958 43 H 0.058 0.942 44 H 0.253 0.747 45 H 0.039 0.961 46 H 0.020 0.980 47 H 0.084 0.916 48 H 0.068 0.932 49 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.367 16.663 12.312 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 C -0.208 4.208 4 O -0.206 6.206 5 C 0.162 3.838 6 C -0.217 4.217 7 C -0.042 4.042 8 C -0.224 4.224 9 C 0.369 3.631 10 O -0.423 6.423 11 N -0.333 5.333 12 C -0.001 4.001 13 C -0.143 4.143 14 H 0.109 0.891 15 C 0.059 3.941 16 N -0.331 5.331 17 C -0.360 4.360 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.566 5.566 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.019 3.981 26 C -0.131 4.131 27 H 0.110 0.890 28 C -0.015 4.015 29 C 0.041 3.959 30 N -0.269 5.269 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.166 0.834 39 H 0.179 0.821 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.038 0.962 47 H 0.102 0.898 48 H 0.087 0.913 49 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.545 16.989 13.138 21.484 hybrid contribution -0.117 -0.552 -1.575 1.673 sum 0.428 16.437 11.563 20.102 Atomic orbital electron populations 1.22221 0.94756 1.03076 1.02607 1.22392 0.94526 0.92801 0.87958 1.21911 1.02017 0.93835 1.03017 1.86280 1.79519 1.15963 1.38808 1.20073 0.89419 0.84600 0.89755 1.21057 1.07315 0.94093 0.99200 1.22317 0.90781 0.93671 0.97466 1.20739 1.09995 0.95021 0.96637 1.17514 0.78978 0.85889 0.80679 1.90771 1.48411 1.68760 1.34364 1.48109 1.38746 1.08507 1.37964 1.21868 0.99676 0.79706 0.98845 1.23161 0.96270 0.96770 0.98148 0.89084 1.21384 0.96195 0.94539 0.82028 1.44524 1.41242 1.42366 1.04988 1.19023 1.10840 1.23608 0.82544 0.90391 1.24814 0.98261 0.98999 0.98081 1.69950 1.24736 1.28318 1.33600 0.86140 0.77957 0.77663 0.84232 1.21657 1.21656 1.20594 1.21151 0.92844 0.95048 0.89016 1.22965 0.96848 0.94573 0.98738 0.89048 1.22444 0.91093 0.96126 0.91885 1.22542 0.88400 0.86719 0.98214 1.67344 1.22841 1.12273 1.24455 0.91853 0.91046 0.91954 0.89080 0.90466 0.91782 0.91586 0.83434 0.82096 0.92032 0.90666 0.93966 0.92429 0.93653 0.94298 0.96241 0.89847 0.91335 0.81292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.53 37.16 0.35 -1.06 16 2 C 0.08 0.72 3.10 -26.73 -0.08 0.64 16 3 C -0.15 -1.01 9.56 37.15 0.36 -0.66 16 4 O -0.30 -3.43 9.75 -18.21 -0.18 -3.61 16 5 C 0.34 4.24 7.46 -16.96 -0.13 4.11 16 6 C -0.20 -2.32 10.02 -39.34 -0.39 -2.71 16 7 C -0.02 -0.22 8.28 -38.92 -0.32 -0.54 16 8 C -0.22 -3.08 5.69 -104.82 -0.60 -3.68 16 9 C 0.58 9.66 7.64 -12.43 -0.09 9.57 16 10 O -0.54 -10.50 16.93 5.30 0.09 -10.41 16 11 N -0.60 -9.71 3.31 -173.36 -0.57 -10.28 16 12 C 0.12 2.02 6.25 -3.57 -0.02 2.00 16 13 C -0.12 -2.10 3.97 -88.60 -0.35 -2.45 16 14 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 15 C 0.18 4.11 4.84 -2.93 -0.01 4.10 16 16 N -0.60 -14.19 3.40 -170.93 -0.58 -14.77 16 17 C -0.23 -6.10 10.24 -15.06 -0.15 -6.25 16 18 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 19 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 20 N -0.92 -26.08 10.28 55.49 0.57 -25.51 16 21 Si 0.91 21.46 29.56 -169.99 -5.02 16.43 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 C 0.15 2.67 6.37 -3.43 -0.02 2.65 16 26 C -0.11 -1.69 4.19 -88.25 -0.37 -2.06 16 27 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 28 C 0.11 1.56 4.33 -3.29 -0.01 1.54 16 29 C 0.20 2.60 10.75 -17.15 -0.18 2.42 16 30 N -0.55 -6.96 8.61 -12.97 -0.11 -7.07 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.89 6.97 -51.93 -0.36 0.53 16 35 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.16 2.05 4.51 -52.49 -0.24 1.81 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.39 7.42 -51.93 -0.39 1.01 16 42 H 0.04 1.07 7.65 -51.93 -0.40 0.67 16 43 H 0.06 1.47 6.34 -51.93 -0.33 1.14 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.04 0.68 7.94 -51.93 -0.41 0.26 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 1.36 5.99 -51.93 -0.31 1.04 16 48 H 0.07 0.84 7.13 -51.93 -0.37 0.47 16 49 H 0.17 2.02 7.84 -52.49 -0.41 1.61 16 LS Contribution 388.28 15.07 5.85 5.85 Total: -1.00 -31.18 388.28 -9.51 -40.69 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.41 Total: 1.30 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -2.14 Total: 7.38 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.70 Total: -57.64 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.09 Total: -14.01 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.18 -9.51 -40.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048850292.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.848 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds