Wall clock time and date at job start Wed Apr 1 2020 04:45:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52991 * 109.47390 * 2 1
4 4 O 1.42900 * 109.46999 * 239.99770 * 2 1 3
5 5 C 1.35722 * 117.00018 * 204.90570 * 4 2 1
6 6 C 1.39233 * 120.38311 * 354.50611 * 5 4 2
7 7 C 1.38318 * 118.44431 * 179.97438 * 6 5 4
8 8 C 1.39470 * 119.13411 * 0.02562 * 7 6 5
9 9 C 1.47927 * 119.65680 * 179.97438 * 8 7 6
10 10 O 1.21547 * 119.99965 * 359.97438 * 9 8 7
11 11 N 1.34781 * 119.99911 * 179.97438 * 9 8 7
12 12 C 1.46659 * 125.33654 * 179.97438 * 11 9 8
13 13 C 1.53728 * 107.94549 * 180.54650 * 12 11 9
14 14 H 1.08997 * 112.56333 * 139.71633 * 13 12 11
15 15 C 1.53692 * 109.34104 * 266.25537 * 13 12 11
16 16 N 1.46633 * 108.00967 * 127.55104 * 15 13 12
17 17 C 1.36943 * 125.33162 * 180.81456 * 16 15 13
18 18 H 1.07999 * 119.99871 * 180.02562 * 17 16 15
19 19 C 1.38811 * 119.99532 * 0.02681 * 17 16 15
20 20 N 1.31621 * 120.00161 * 359.97438 * 19 17 16
21 21 Si 1.86803 * 119.99562 * 180.02562 * 19 17 16
22 22 H 1.48498 * 109.47276 * 60.00176 * 21 19 17
23 23 H 1.48501 * 109.46909 * 179.97438 * 21 19 17
24 24 H 1.48493 * 109.47313 * 299.99755 * 21 19 17
25 25 C 1.46755 * 109.34243 * 0.83775 * 16 15 13
26 26 C 1.53931 * 106.71848 * 341.65785 * 25 16 15
27 27 H 1.08993 * 113.01238 * 150.83414 * 26 25 16
28 28 C 1.46770 * 125.33631 * 359.69716 * 11 9 8
29 29 N 1.32795 * 120.68626 * 359.97438 * 8 7 6
30 30 C 1.31379 * 121.69086 * 359.70994 * 29 8 7
31 31 H 1.08997 * 109.46947 * 60.00014 * 1 2 3
32 32 H 1.09004 * 109.47231 * 179.97438 * 1 2 3
33 33 H 1.08996 * 109.47445 * 299.99984 * 1 2 3
34 34 H 1.09006 * 109.46973 * 120.00220 * 2 1 3
35 35 H 1.09003 * 109.47291 * 300.00585 * 3 2 1
36 36 H 1.09000 * 109.47178 * 59.99967 * 3 2 1
37 37 H 1.08997 * 109.47454 * 179.97438 * 3 2 1
38 38 H 1.07992 * 120.77298 * 359.97438 * 6 5 4
39 39 H 1.07998 * 120.43109 * 179.97438 * 7 6 5
40 40 H 1.08998 * 109.77553 * 300.16986 * 12 11 9
41 41 H 1.09007 * 109.77645 * 60.92463 * 12 11 9
42 42 H 1.09000 * 109.76099 * 247.19109 * 15 13 12
43 43 H 1.08999 * 109.76014 * 7.91216 * 15 13 12
44 44 H 0.96994 * 119.99775 * 180.02562 * 20 19 17
45 45 H 1.09002 * 110.00690 * 222.33978 * 25 16 15
46 46 H 1.08999 * 110.00658 * 100.97122 * 25 16 15
47 47 H 1.09002 * 110.02619 * 280.77223 * 28 11 9
48 48 H 1.09002 * 110.03155 * 42.18676 * 28 11 9
49 49 H 1.08006 * 119.59799 * 180.30637 * 30 29 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 8 2.0063 -0.6737 -1.1668
5 6 3.2458 -1.2224 -1.0986
6 6 4.0436 -1.0224 0.0248
7 6 5.2999 -1.6006 0.0520
8 6 5.7222 -2.3589 -1.0397
9 6 7.0637 -2.9820 -1.0230
10 8 7.7918 -2.8315 -0.0614
11 7 7.4786 -3.7167 -2.0741
12 6 8.7801 -4.3840 -2.1816
13 6 8.8376 -5.0934 -3.5442
14 1 9.8129 -5.0027 -4.0221
15 6 8.3817 -6.5518 -3.3784
16 7 7.3256 -6.8112 -4.3620
17 6 6.6574 -7.9971 -4.5124
18 1 5.8920 -8.0935 -5.2682
19 6 6.9640 -9.0751 -3.6933
20 7 7.8972 -8.9576 -2.7726
21 14 6.0531 -10.6929 -3.8989
22 1 6.2712 -11.2127 -5.2728
23 1 6.5633 -11.6773 -2.9110
24 1 4.6011 -10.4752 -3.6768
25 6 7.0971 -5.6013 -5.1604
26 6 7.7005 -4.4275 -4.3683
27 1 8.0504 -3.6171 -5.0077
28 6 6.6965 -3.9789 -3.2880
29 7 4.9325 -2.5273 -2.0939
30 6 3.7318 -1.9969 -2.1487
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3634 -1.0277 -0.0005
33 1 -0.3634 0.5138 0.8899
34 1 1.8933 -0.5139 0.8900
35 1 1.6766 1.9563 -0.8899
36 1 1.6767 1.9563 0.8900
37 1 3.1300 1.4424 0.0005
38 1 3.6899 -0.4297 0.8553
39 1 5.9456 -1.4659 0.9072
40 1 9.5795 -3.6460 -2.1161
41 1 8.8869 -5.1154 -1.3804
42 1 9.2223 -7.2229 -3.5546
43 1 7.9931 -6.7042 -2.3715
44 1 8.1116 -9.7110 -2.2006
45 1 6.0278 -5.4448 -5.3026
46 1 7.5928 -5.6931 -6.1268
47 1 5.9689 -4.7685 -3.1000
48 1 6.1871 -3.0698 -3.6077
49 1 3.1159 -2.1597 -3.0208
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049253744.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:45:25
Heat of formation + Delta-G solvation = 5.651999 kcal
Electronic energy + Delta-G solvation = -30612.234968 eV
Core-core repulsion = 26540.944756 eV
Total energy + Delta-G solvation = -4071.290212 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-41.14707 -40.01185 -38.80663 -37.75132 -34.88319 -33.79327 -32.63385 -32.11589
-30.90522 -29.80245 -29.29886 -27.81052 -25.83034 -25.34820 -24.67174 -23.81409
-22.69949 -21.59573 -20.01175 -19.87164 -19.17772 -18.67089 -17.49609 -16.88100
-16.64259 -16.17047 -15.89653 -15.47278 -15.06142 -14.80020 -14.58877 -14.39062
-14.21502 -13.73528 -13.67843 -13.50576 -13.13245 -12.99519 -12.86450 -12.75111
-12.59080 -12.47894 -12.30947 -11.94218 -11.80742 -11.44648 -11.36987 -11.31676
-11.22603 -10.84613 -10.75751 -10.34863 -10.16777 -10.06913 -10.05778 -9.94310
-9.78003 -9.56128 -9.33707 -8.69989 -8.54938 -8.14926 -6.77508 -5.67309
-3.00581 0.60796 0.96979 2.63799 2.83390 3.24535 3.43413 3.47532
3.48957 3.81180 4.14915 4.19610 4.33263 4.37777 4.48878 4.53743
4.59595 4.74687 4.88221 5.00282 5.03710 5.15294 5.19614 5.20235
5.26579 5.42559 5.55207 5.56865 5.57299 5.63437 5.68614 5.73258
5.76081 5.81759 5.88367 6.01330 6.11281 6.23641 6.33637 6.41993
6.56910 6.68098 6.71346 6.74745 6.90071 6.94286 7.60211 7.61285
7.64896 7.84879 7.87460 8.31984 8.38084 9.27101 9.87912 10.52089
11.44191
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.012896 B = 0.002730 C = 0.002469
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2170.677288 B =10254.557821 C =11335.815754
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.073 3.927
3 C -0.182 4.182
4 O -0.300 6.300
5 C 0.102 3.898
6 C -0.179 4.179
7 C -0.069 4.069
8 C 0.047 3.953
9 C 0.581 3.419
10 O -0.549 6.549
11 N -0.585 5.585
12 C 0.119 3.881
13 C -0.124 4.124
14 H 0.090 0.910
15 C 0.186 3.814
16 N -0.602 5.602
17 C -0.228 4.228
18 H 0.078 0.922
19 C -0.008 4.008
20 N -0.922 5.922
21 Si 0.911 3.089
22 H -0.285 1.285
23 H -0.291 1.291
24 H -0.286 1.286
25 C 0.147 3.853
26 C -0.116 4.116
27 H 0.087 0.913
28 C 0.121 3.879
29 N -0.408 5.408
30 C 0.074 3.926
31 H 0.068 0.932
32 H 0.067 0.933
33 H 0.078 0.922
34 H 0.075 0.925
35 H 0.069 0.931
36 H 0.074 0.926
37 H 0.063 0.937
38 H 0.145 0.855
39 H 0.150 0.850
40 H 0.060 0.940
41 H 0.074 0.926
42 H 0.044 0.956
43 H 0.050 0.950
44 H 0.252 0.748
45 H 0.039 0.961
46 H 0.018 0.982
47 H 0.079 0.921
48 H 0.089 0.911
49 H 0.171 0.829
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.741 21.660 4.675 24.625
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.017 3.983
3 C -0.239 4.239
4 O -0.212 6.212
5 C 0.053 3.947
6 C -0.205 4.205
7 C -0.090 4.090
8 C -0.091 4.091
9 C 0.369 3.631
10 O -0.428 6.428
11 N -0.315 5.315
12 C -0.003 4.003
13 C -0.144 4.144
14 H 0.108 0.892
15 C 0.061 3.939
16 N -0.329 5.329
17 C -0.356 4.356
18 H 0.095 0.905
19 C -0.204 4.204
20 N -0.569 5.569
21 Si 0.742 3.258
22 H -0.212 1.212
23 H -0.217 1.217
24 H -0.212 1.212
25 C 0.020 3.980
26 C -0.136 4.136
27 H 0.105 0.895
28 C -0.001 4.001
29 N -0.119 5.119
30 C -0.088 4.088
31 H 0.088 0.912
32 H 0.086 0.914
33 H 0.097 0.903
34 H 0.093 0.907
35 H 0.089 0.911
36 H 0.093 0.907
37 H 0.082 0.918
38 H 0.163 0.837
39 H 0.168 0.832
40 H 0.078 0.922
41 H 0.093 0.907
42 H 0.062 0.938
43 H 0.068 0.932
44 H 0.063 0.937
45 H 0.057 0.943
46 H 0.036 0.964
47 H 0.097 0.903
48 H 0.107 0.893
49 H 0.188 0.812
Dipole moment (debyes) X Y Z Total
from point charges -10.182 21.051 4.513 23.815
hybrid contribution -0.732 -0.368 0.859 1.187
sum -10.914 20.683 5.372 23.995
Atomic orbital electron populations
1.21861 0.91997 1.03503 1.03254 1.22555 0.95834 0.92719 0.87192
1.22403 1.02237 0.95783 1.03492 1.86124 1.28447 1.67585 1.39037
1.20446 0.85407 0.93399 0.95464 1.21704 0.95331 1.04452 0.99009
1.21909 0.95189 0.93262 0.98624 1.21024 0.95553 1.00532 0.91988
1.17316 0.84934 0.78882 0.81985 1.90761 1.55585 1.62708 1.33711
1.48074 1.17670 1.48057 1.17729 1.21888 0.84031 0.95738 0.98644
1.23156 0.98708 0.99167 0.93342 0.89190 1.21095 0.91543 0.87274
0.94000 1.44200 1.42268 1.08284 1.38102 1.18988 1.14494 0.87246
1.14879 0.90452 1.24796 0.99085 0.98243 0.98284 1.69949 1.33422
1.30525 1.23025 0.86206 0.79085 0.83360 0.77145 1.21195 1.21676
1.21217 1.21151 0.97554 0.85924 0.93371 1.23044 0.95864 0.98020
0.96720 0.89453 1.22350 0.93571 1.01782 0.82430 1.67990 1.03125
1.16741 1.24059 1.22386 0.92706 0.95539 0.98165 0.91246 0.91383
0.90337 0.90662 0.91144 0.90734 0.91769 0.83695 0.83221 0.92174
0.90737 0.93814 0.93169 0.93721 0.94331 0.96411 0.90312 0.89321
0.81240
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.75 9.56 37.16 0.36 -0.39 16
2 C 0.07 0.47 2.85 -26.74 -0.08 0.39 16
3 C -0.18 -0.97 9.18 37.15 0.34 -0.63 16
4 O -0.30 -2.80 9.80 -18.87 -0.19 -2.98 16
5 C 0.10 1.08 6.63 -38.84 -0.26 0.82 16
6 C -0.18 -1.79 8.32 -39.18 -0.33 -2.11 16
7 C -0.07 -0.86 9.62 -39.09 -0.38 -1.24 16
8 C 0.05 0.72 6.72 -83.02 -0.56 0.16 16
9 C 0.58 10.63 7.82 -12.29 -0.10 10.53 16
10 O -0.55 -11.09 16.62 5.32 0.09 -11.00 16
11 N -0.59 -10.72 3.31 -173.26 -0.57 -11.30 16
12 C 0.12 2.18 6.23 -3.58 -0.02 2.15 16
13 C -0.12 -2.31 4.02 -88.60 -0.36 -2.67 16
14 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16
15 C 0.19 4.49 4.75 -3.61 -0.02 4.47 16
16 N -0.60 -15.23 3.37 -171.93 -0.58 -15.81 16
17 C -0.23 -6.34 10.25 -15.06 -0.15 -6.49 16
18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16
19 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16
20 N -0.92 -27.31 10.25 55.49 0.57 -26.74 16
21 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16
22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16
23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
25 C 0.15 2.97 6.37 -3.42 -0.02 2.95 16
26 C -0.12 -2.01 4.19 -88.25 -0.37 -2.38 16
27 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16
28 C 0.12 2.11 4.96 -3.29 -0.02 2.10 16
29 N -0.41 -5.93 6.64 -9.67 -0.06 -5.99 16
30 C 0.07 0.88 11.14 -17.37 -0.19 0.69 16
31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
33 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16
34 H 0.08 0.44 6.35 -51.93 -0.33 0.11 16
35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16
37 H 0.06 0.38 6.92 -51.93 -0.36 0.02 16
38 H 0.15 1.03 5.57 -52.49 -0.29 0.74 16
39 H 0.15 1.75 7.63 -52.49 -0.40 1.35 16
40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
41 H 0.07 1.49 7.44 -51.93 -0.39 1.10 16
42 H 0.04 1.17 7.45 -51.93 -0.39 0.79 16
43 H 0.05 1.38 6.51 -51.93 -0.34 1.04 16
44 H 0.25 7.32 8.31 -40.82 -0.34 6.99 16
45 H 0.04 0.76 7.95 -51.93 -0.41 0.35 16
46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16
47 H 0.08 1.61 7.72 -51.93 -0.40 1.21 16
48 H 0.09 1.40 6.18 -51.93 -0.32 1.08 16
49 H 0.17 1.65 8.06 -52.48 -0.42 1.23 16
LS Contribution 386.14 15.07 5.82 5.82
Total: -1.00 -33.21 386.14 -9.59 -42.80
By element:
Atomic # 1 Polarization: 7.27 SS G_CDS: -7.40 Total: -0.13 kcal
Atomic # 6 Polarization: 10.28 SS G_CDS: -2.24 Total: 8.04 kcal
Atomic # 7 Polarization: -59.19 SS G_CDS: -0.65 Total: -59.84 kcal
Atomic # 8 Polarization: -13.89 SS G_CDS: -0.10 Total: -13.98 kcal
Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -33.21 -9.59 -42.80 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049253744.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.450 kcal
(2) G-P(sol) polarization free energy of solvation -33.208 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.242 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.652 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.24 seconds