Wall clock time and date at job start Wed Apr 1 2020 04:45:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52991 * 109.47390 * 2 1
4 4 O 1.42900 * 109.46999 * 239.99770 * 2 1 3
5 5 C 1.35722 * 117.00018 * 204.90570 * 4 2 1
6 6 C 1.39233 * 120.38311 * 354.50611 * 5 4 2
7 7 C 1.38318 * 118.44431 * 179.97438 * 6 5 4
8 8 C 1.39470 * 119.13411 * 0.02562 * 7 6 5
9 9 C 1.47927 * 119.65680 * 179.97438 * 8 7 6
10 10 O 1.21547 * 119.99965 * 359.97438 * 9 8 7
11 11 N 1.34781 * 119.99911 * 179.97438 * 9 8 7
12 12 C 1.46659 * 125.33654 * 179.97438 * 11 9 8
13 13 C 1.53728 * 107.94549 * 180.54650 * 12 11 9
14 14 H 1.08997 * 112.56333 * 139.71633 * 13 12 11
15 15 C 1.53692 * 109.34104 * 266.25537 * 13 12 11
16 16 N 1.46633 * 108.00967 * 127.55104 * 15 13 12
17 17 C 1.36943 * 125.33162 * 180.81456 * 16 15 13
18 18 H 1.07999 * 119.99871 * 180.02562 * 17 16 15
19 19 C 1.38811 * 119.99532 * 0.02681 * 17 16 15
20 20 N 1.31621 * 120.00161 * 359.97438 * 19 17 16
21 21 Si 1.86803 * 119.99562 * 180.02562 * 19 17 16
22 22 H 1.48498 * 109.47276 * 60.00176 * 21 19 17
23 23 H 1.48501 * 109.46909 * 179.97438 * 21 19 17
24 24 H 1.48493 * 109.47313 * 299.99755 * 21 19 17
25 25 C 1.46755 * 109.34243 * 0.83775 * 16 15 13
26 26 C 1.53931 * 106.71848 * 341.65785 * 25 16 15
27 27 H 1.08993 * 113.01238 * 150.83414 * 26 25 16
28 28 C 1.46770 * 125.33631 * 359.69716 * 11 9 8
29 29 N 1.32795 * 120.68626 * 359.97438 * 8 7 6
30 30 C 1.31379 * 121.69086 * 359.70994 * 29 8 7
31 31 H 1.08997 * 109.46947 * 60.00014 * 1 2 3
32 32 H 1.09004 * 109.47231 * 179.97438 * 1 2 3
33 33 H 1.08996 * 109.47445 * 299.99984 * 1 2 3
34 34 H 1.09006 * 109.46973 * 120.00220 * 2 1 3
35 35 H 1.09003 * 109.47291 * 300.00585 * 3 2 1
36 36 H 1.09000 * 109.47178 * 59.99967 * 3 2 1
37 37 H 1.08997 * 109.47454 * 179.97438 * 3 2 1
38 38 H 1.07992 * 120.77298 * 359.97438 * 6 5 4
39 39 H 1.07998 * 120.43109 * 179.97438 * 7 6 5
40 40 H 1.08998 * 109.77553 * 300.16986 * 12 11 9
41 41 H 1.09007 * 109.77645 * 60.92463 * 12 11 9
42 42 H 1.09000 * 109.76099 * 247.19109 * 15 13 12
43 43 H 1.08999 * 109.76014 * 7.91216 * 15 13 12
44 44 H 0.96994 * 119.99775 * 180.02562 * 20 19 17
45 45 H 1.09002 * 110.00690 * 222.33978 * 25 16 15
46 46 H 1.08999 * 110.00658 * 100.97122 * 25 16 15
47 47 H 1.09002 * 110.02619 * 280.77223 * 28 11 9
48 48 H 1.09002 * 110.03155 * 42.18676 * 28 11 9
49 49 H 1.08006 * 119.59799 * 180.30637 * 30 29 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 8 2.0063 -0.6737 -1.1668
5 6 3.2458 -1.2224 -1.0986
6 6 4.0436 -1.0224 0.0248
7 6 5.2999 -1.6006 0.0520
8 6 5.7222 -2.3589 -1.0397
9 6 7.0637 -2.9820 -1.0230
10 8 7.7918 -2.8315 -0.0614
11 7 7.4786 -3.7167 -2.0741
12 6 8.7801 -4.3840 -2.1816
13 6 8.8376 -5.0934 -3.5442
14 1 9.8129 -5.0027 -4.0221
15 6 8.3817 -6.5518 -3.3784
16 7 7.3256 -6.8112 -4.3620
17 6 6.6574 -7.9971 -4.5124
18 1 5.8920 -8.0935 -5.2682
19 6 6.9640 -9.0751 -3.6933
20 7 7.8972 -8.9576 -2.7726
21 14 6.0531 -10.6929 -3.8989
22 1 6.2712 -11.2127 -5.2728
23 1 6.5633 -11.6773 -2.9110
24 1 4.6011 -10.4752 -3.6768
25 6 7.0971 -5.6013 -5.1604
26 6 7.7005 -4.4275 -4.3683
27 1 8.0504 -3.6171 -5.0077
28 6 6.6965 -3.9789 -3.2880
29 7 4.9325 -2.5273 -2.0939
30 6 3.7318 -1.9969 -2.1487
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3634 -1.0277 -0.0005
33 1 -0.3634 0.5138 0.8899
34 1 1.8933 -0.5139 0.8900
35 1 1.6766 1.9563 -0.8899
36 1 1.6767 1.9563 0.8900
37 1 3.1300 1.4424 0.0005
38 1 3.6899 -0.4297 0.8553
39 1 5.9456 -1.4659 0.9072
40 1 9.5795 -3.6460 -2.1161
41 1 8.8869 -5.1154 -1.3804
42 1 9.2223 -7.2229 -3.5546
43 1 7.9931 -6.7042 -2.3715
44 1 8.1116 -9.7110 -2.2006
45 1 6.0278 -5.4448 -5.3026
46 1 7.5928 -5.6931 -6.1268
47 1 5.9689 -4.7685 -3.1000
48 1 6.1871 -3.0698 -3.6077
49 1 3.1159 -2.1597 -3.0208
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049253744.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:45:24
Heat of formation + Delta-G solvation = -14.875404 kcal
Electronic energy + Delta-G solvation = -30613.125103 eV
Core-core repulsion = 26540.944756 eV
Total energy + Delta-G solvation = -4072.180347 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-42.14428 -41.27783 -39.95100 -39.03059 -36.60326 -34.39338 -34.12900 -33.42174
-32.23129 -31.10398 -31.03491 -28.21121 -27.53241 -26.98343 -25.88755 -24.90313
-24.01630 -22.38143 -21.76857 -21.11624 -20.70974 -19.42270 -18.94893 -18.44732
-17.88930 -17.50652 -16.79419 -16.66742 -16.52094 -16.00971 -15.72825 -15.65459
-15.51173 -15.09518 -14.75794 -14.64878 -14.48986 -14.19836 -13.99705 -13.71323
-13.58681 -13.40361 -13.33277 -13.23309 -13.07301 -13.00221 -12.79703 -12.71309
-12.64056 -12.02700 -11.99985 -11.87244 -11.84542 -11.76588 -11.54633 -11.41013
-11.28438 -10.96005 -10.67570 -10.49081 -9.76693 -9.45350 -8.84750 -7.83010
-5.17749 -0.40793 0.08107 1.44996 1.48572 1.54589 1.60154 1.85610
2.02741 2.50838 2.73161 3.04983 3.35078 3.39542 3.47736 3.62217
3.68128 3.75325 3.85554 3.89163 3.95080 3.98395 3.99847 4.13569
4.34504 4.36755 4.53806 4.60178 4.67357 4.69912 4.73169 4.78168
4.82455 4.85888 4.87121 4.88324 4.89439 4.98458 5.11646 5.14607
5.21157 5.23975 5.28402 5.37189 5.44848 5.49773 5.65667 5.78785
6.14172 6.23382 6.42779 6.62367 7.01924 7.13200 7.82872 8.44649
9.27064
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.012896 B = 0.002730 C = 0.002469
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2170.677288 B =10254.557821 C =11335.815754
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.062 3.938
3 C -0.180 4.180
4 O -0.305 6.305
5 C 0.117 3.883
6 C -0.168 4.168
7 C -0.067 4.067
8 C 0.014 3.986
9 C 0.576 3.424
10 O -0.578 6.578
11 N -0.593 5.593
12 C 0.122 3.878
13 C -0.112 4.112
14 H 0.119 0.881
15 C 0.199 3.801
16 N -0.623 5.623
17 C -0.237 4.237
18 H 0.086 0.914
19 C -0.070 4.070
20 N -0.953 5.953
21 Si 0.977 3.023
22 H -0.274 1.274
23 H -0.298 1.298
24 H -0.278 1.278
25 C 0.141 3.859
26 C -0.100 4.100
27 H 0.133 0.867
28 C 0.133 3.867
29 N -0.426 5.426
30 C 0.066 3.934
31 H 0.067 0.933
32 H 0.060 0.940
33 H 0.100 0.900
34 H 0.085 0.915
35 H 0.066 0.934
36 H 0.095 0.905
37 H 0.058 0.942
38 H 0.178 0.822
39 H 0.154 0.846
40 H 0.084 0.916
41 H 0.044 0.956
42 H 0.006 0.994
43 H 0.005 0.995
44 H 0.244 0.756
45 H 0.045 0.955
46 H 0.032 0.968
47 H 0.042 0.958
48 H 0.111 0.889
49 H 0.189 0.811
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.697 24.297 3.988 27.702
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.007 3.993
3 C -0.237 4.237
4 O -0.217 6.217
5 C 0.067 3.933
6 C -0.194 4.194
7 C -0.088 4.088
8 C -0.122 4.122
9 C 0.365 3.635
10 O -0.459 6.459
11 N -0.323 5.323
12 C 0.000 4.000
13 C -0.132 4.132
14 H 0.137 0.863
15 C 0.074 3.926
16 N -0.349 5.349
17 C -0.366 4.366
18 H 0.103 0.897
19 C -0.262 4.262
20 N -0.602 5.602
21 Si 0.805 3.195
22 H -0.200 1.200
23 H -0.225 1.225
24 H -0.204 1.204
25 C 0.016 3.984
26 C -0.119 4.119
27 H 0.151 0.849
28 C 0.011 3.989
29 N -0.138 5.138
30 C -0.097 4.097
31 H 0.086 0.914
32 H 0.079 0.921
33 H 0.118 0.882
34 H 0.103 0.897
35 H 0.085 0.915
36 H 0.114 0.886
37 H 0.077 0.923
38 H 0.195 0.805
39 H 0.171 0.829
40 H 0.102 0.898
41 H 0.063 0.937
42 H 0.025 0.975
43 H 0.023 0.977
44 H 0.053 0.947
45 H 0.063 0.937
46 H 0.050 0.950
47 H 0.060 0.940
48 H 0.129 0.871
49 H 0.206 0.794
Dipole moment (debyes) X Y Z Total
from point charges -12.161 23.721 3.792 26.924
hybrid contribution -0.304 -1.100 1.094 1.581
sum -12.465 22.621 4.886 26.286
Atomic orbital electron populations
1.21899 0.90866 1.03403 1.04303 1.22913 0.96762 0.93239 0.86404
1.22401 1.01847 0.94994 1.04430 1.86146 1.27474 1.67319 1.40739
1.20442 0.85831 0.92121 0.94902 1.21968 0.93976 1.03747 0.99691
1.21994 0.96213 0.92730 0.97821 1.20717 0.94764 1.02881 0.93868
1.17865 0.85951 0.78405 0.81274 1.90720 1.56797 1.63874 1.34528
1.48187 1.17674 1.48154 1.18265 1.21789 0.85204 0.95669 0.97357
1.23023 1.00539 0.95286 0.94310 0.86347 1.20744 0.89881 0.90344
0.91623 1.44508 1.42244 1.09291 1.38901 1.19426 1.14363 0.88364
1.14479 0.89669 1.25656 1.00332 1.01754 0.98477 1.70204 1.35157
1.30841 1.24034 0.85169 0.77987 0.79133 0.77177 1.19970 1.22462
1.20410 1.21364 0.98417 0.85047 0.93569 1.23114 0.94516 0.97930
0.96380 0.84945 1.22217 0.92962 1.01496 0.82245 1.67821 1.04180
1.17535 1.24282 1.22696 0.92113 0.95556 0.99346 0.91367 0.92062
0.88161 0.89709 0.91471 0.88630 0.92313 0.80461 0.82856 0.89801
0.93749 0.97528 0.97702 0.94677 0.93664 0.94979 0.93956 0.87119
0.79440
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.06 9.56 71.98 0.69 -0.38 16
2 C 0.06 0.61 2.85 30.59 0.09 0.70 16
3 C -0.18 -1.33 9.18 71.98 0.66 -0.67 16
4 O -0.30 -4.89 9.80 -90.45 -0.89 -5.78 16
5 C 0.12 2.21 6.63 22.75 0.15 2.36 16
6 C -0.17 -2.97 8.32 22.53 0.19 -2.78 16
7 C -0.07 -1.61 9.62 22.59 0.22 -1.39 16
8 C 0.01 0.42 6.72 41.86 0.28 0.70 16
9 C 0.58 21.47 7.82 86.81 0.68 22.15 16
10 O -0.58 -24.02 16.62 -3.86 -0.06 -24.08 16
11 N -0.59 -21.99 3.31 -820.35 -2.72 -24.71 16
12 C 0.12 4.54 6.23 86.59 0.54 5.08 16
13 C -0.11 -4.15 4.02 -9.48 -0.04 -4.18 16
14 H 0.12 3.75 8.14 -2.39 -0.02 3.73 16
15 C 0.20 10.09 4.75 86.59 0.41 10.50 16
16 N -0.62 -32.17 3.37 -697.86 -2.35 -34.52 16
17 C -0.24 -13.45 10.25 84.03 0.86 -12.59 16
18 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16
19 C -0.07 -4.06 5.48 84.86 0.47 -3.60 16
20 N -0.95 -59.34 10.25 21.65 0.22 -59.12 16
21 Si 0.98 46.96 29.55 68.60 2.03 48.99 16
22 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16
23 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16
24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16
25 C 0.14 5.56 6.37 86.65 0.55 6.11 16
26 C -0.10 -3.25 4.19 -9.26 -0.04 -3.29 16
27 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16
28 C 0.13 4.59 4.96 86.72 0.43 5.02 16
29 N -0.43 -12.15 6.64 -184.52 -1.23 -13.37 16
30 C 0.07 1.47 11.14 85.00 0.95 2.41 16
31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16
32 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16
33 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16
34 H 0.09 0.69 6.35 -2.38 -0.02 0.68 16
35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16
36 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16
37 H 0.06 0.52 6.92 -2.39 -0.02 0.50 16
38 H 0.18 1.89 5.57 -2.91 -0.02 1.87 16
39 H 0.15 3.51 7.63 -2.91 -0.02 3.48 16
40 H 0.08 2.71 8.14 -2.39 -0.02 2.70 16
41 H 0.04 1.90 7.44 -2.38 -0.02 1.88 16
42 H 0.01 0.37 7.45 -2.39 -0.02 0.35 16
43 H 0.00 0.28 6.51 -2.39 -0.02 0.27 16
44 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16
45 H 0.05 1.73 7.95 -2.39 -0.02 1.71 16
46 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16
47 H 0.04 1.77 7.72 -2.39 -0.02 1.75 16
48 H 0.11 3.34 6.18 -2.39 -0.01 3.32 16
49 H 0.19 3.32 8.06 -2.91 -0.02 3.30 16
Total: -1.00 -76.54 386.14 3.04 -73.49
By element:
Atomic # 1 Polarization: 11.99 SS G_CDS: 0.96 Total: 12.95 kcal
Atomic # 6 Polarization: 19.07 SS G_CDS: 7.08 Total: 26.15 kcal
Atomic # 7 Polarization: -125.65 SS G_CDS: -6.07 Total: -131.72 kcal
Atomic # 8 Polarization: -28.91 SS G_CDS: -0.95 Total: -29.86 kcal
Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal
Total: -76.54 3.04 -73.49 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049253744.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.618 kcal
(2) G-P(sol) polarization free energy of solvation -76.536 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.918 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.493 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.875 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds