Wall clock time and date at job start Wed Apr 1 2020 04:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47193 * 2 1 4 4 O 1.42900 * 109.47049 * 240.00264 * 2 1 3 5 5 C 1.35430 * 116.99812 * 269.99379 * 4 2 1 6 6 N 1.32236 * 119.79720 * 0.02562 * 5 4 2 7 7 C 1.31884 * 121.79493 * 179.97438 * 6 5 4 8 8 C 1.38354 * 121.18818 * 359.97438 * 7 6 5 9 9 C 1.38336 * 119.45824 * 359.97438 * 8 7 6 10 10 C 1.39989 * 118.34780 * 359.73041 * 9 8 7 11 11 C 1.47522 * 120.59353 * 180.28319 * 10 9 8 12 12 O 1.21593 * 119.99671 * 217.37468 * 11 10 9 13 13 N 1.34772 * 120.00370 * 37.38636 * 11 10 9 14 14 C 1.46666 * 125.34178 * 185.27493 * 13 11 10 15 15 C 1.53724 * 107.94519 * 180.53976 * 14 13 11 16 16 H 1.09001 * 112.56315 * 139.71548 * 15 14 13 17 17 C 1.53689 * 109.34286 * 266.24949 * 15 14 13 18 18 N 1.46638 * 108.01095 * 127.55221 * 17 15 14 19 19 C 1.36942 * 125.32942 * 180.81537 * 18 17 15 20 20 H 1.07997 * 120.00145 * 180.02562 * 19 18 17 21 21 C 1.38815 * 119.99627 * 0.02968 * 19 18 17 22 22 N 1.31621 * 120.00355 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99533 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47205 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47292 * 120.00148 * 23 21 19 26 26 H 1.48511 * 109.46731 * 239.99822 * 23 21 19 27 27 C 1.46743 * 109.34418 * 0.84159 * 18 17 15 28 28 C 1.53937 * 106.71819 * 341.65620 * 27 18 17 29 29 H 1.09003 * 113.01065 * 150.83333 * 28 27 18 30 30 C 1.46781 * 125.33687 * 4.95879 * 13 11 10 31 31 H 1.09002 * 109.47602 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47508 * 60.00034 * 1 2 3 33 33 H 1.09000 * 109.47472 * 300.00057 * 1 2 3 34 34 H 1.09000 * 109.47038 * 120.00212 * 2 1 3 35 35 H 1.09000 * 109.46958 * 59.99628 * 3 2 1 36 36 H 1.08998 * 109.47288 * 179.97438 * 3 2 1 37 37 H 1.08999 * 109.46866 * 300.00359 * 3 2 1 38 38 H 1.08004 * 119.40232 * 179.97438 * 7 6 5 39 39 H 1.08003 * 120.27025 * 179.97438 * 8 7 6 40 40 H 1.08001 * 120.82255 * 180.02562 * 9 8 7 41 41 H 1.09004 * 109.76643 * 300.15666 * 14 13 11 42 42 H 1.08993 * 109.77434 * 60.91579 * 14 13 11 43 43 H 1.08997 * 109.76472 * 247.20143 * 17 15 14 44 44 H 1.09005 * 109.75639 * 7.91513 * 17 15 14 45 45 H 0.96996 * 119.99691 * 180.02562 * 22 21 19 46 46 H 1.08998 * 110.01094 * 222.34124 * 27 18 17 47 47 H 1.08999 * 110.00946 * 100.96996 * 27 18 17 48 48 H 1.09007 * 110.02630 * 280.78006 * 30 13 11 49 49 H 1.09003 * 110.02419 * 42.19573 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2113 -2.0084 -1.0655 6 7 1.9695 -2.6254 0.0789 7 6 2.1550 -3.9233 0.2213 8 6 2.6129 -4.7009 -0.8274 9 6 2.8810 -4.1075 -2.0479 10 6 2.6708 -2.7295 -2.1775 11 6 2.9347 -2.0470 -3.4584 12 8 3.4119 -0.9286 -3.4643 13 7 2.6466 -2.6628 -4.6221 14 6 2.9595 -2.1428 -5.9573 15 6 2.4440 -3.1554 -6.9927 16 1 1.9857 -2.6737 -7.8565 17 6 3.5801 -4.1180 -7.3728 18 7 3.0892 -5.4891 -7.2011 19 6 3.8192 -6.6256 -7.4264 20 1 3.3697 -7.5955 -7.2724 21 6 5.1369 -6.5310 -7.8526 22 7 5.6845 -5.3490 -8.0407 23 14 6.1324 -8.0814 -8.1606 24 1 5.2925 -9.2731 -7.8785 25 1 6.5756 -8.1118 -9.5776 26 1 7.3207 -8.0917 -7.2699 27 6 1.6930 -5.4526 -6.7508 28 6 1.4434 -4.0385 -6.1962 29 1 0.4073 -3.7165 -6.3009 30 6 1.9764 -3.9622 -4.7517 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.1299 1.4426 0.0005 37 1 1.6766 1.9564 -0.8900 38 1 1.9455 -4.3876 1.1737 39 1 2.7599 -5.7626 -0.6943 40 1 3.2389 -4.6936 -2.8815 41 1 2.4659 -1.1820 -6.1037 42 1 4.0377 -2.0236 -6.0633 43 1 3.8677 -3.9568 -8.4117 44 1 4.4386 -3.9498 -6.7224 45 1 6.6052 -5.2830 -8.3389 46 1 1.5343 -6.1938 -5.9676 47 1 1.0253 -5.6474 -7.5900 48 1 2.6871 -4.7685 -4.5700 49 1 1.1487 -4.0273 -4.0455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049255679.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:27 Heat of formation + Delta-G solvation = 1.610301 kcal Electronic energy + Delta-G solvation = -31317.860969 eV Core-core repulsion = 27246.395495 eV Total energy + Delta-G solvation = -4071.465474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.07399 -39.87296 -38.36089 -37.91117 -34.93558 -33.41457 -32.98917 -32.13163 -30.66439 -29.93979 -29.42283 -27.44732 -25.85873 -25.56177 -24.59495 -23.76910 -22.64902 -21.29988 -20.12617 -19.88109 -19.27752 -18.47489 -17.29327 -16.94066 -16.69421 -16.16932 -15.80275 -15.29611 -15.15641 -14.77162 -14.51525 -14.23402 -14.01699 -13.77628 -13.64026 -13.31927 -13.16235 -12.81026 -12.62263 -12.54125 -12.47110 -12.44081 -12.12013 -12.00696 -11.97168 -11.50260 -11.42484 -11.10396 -10.94164 -10.90948 -10.85927 -10.43509 -10.18724 -10.09784 -10.04054 -10.01708 -9.83402 -9.66993 -9.48336 -8.64565 -8.63511 -8.26096 -6.87829 -5.76386 -3.10546 0.67836 1.14043 2.83031 2.96827 3.20930 3.36453 3.41996 3.44753 3.69681 4.06596 4.45307 4.57655 4.66192 4.73063 4.79661 4.80834 4.84259 4.99813 5.03176 5.07877 5.24541 5.34986 5.35640 5.46975 5.55363 5.57238 5.59782 5.62627 5.63683 5.67398 5.77590 5.86434 5.94215 5.97311 5.97732 5.99757 6.15226 6.25922 6.28541 6.36155 6.53363 6.55925 6.64029 6.78626 7.16975 7.52923 7.54658 7.61043 7.77873 7.79951 8.22176 8.40239 9.17623 9.78202 10.41676 11.34876 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.002953 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.904531 B = 9479.366951 C =10097.156065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.078 3.922 3 C -0.149 4.149 4 O -0.276 6.276 5 C 0.369 3.631 6 N -0.547 5.547 7 C 0.158 3.842 8 C -0.218 4.218 9 C -0.008 4.008 10 C -0.199 4.199 11 C 0.581 3.419 12 O -0.526 6.526 13 N -0.604 5.604 14 C 0.123 3.877 15 C -0.123 4.123 16 H 0.091 0.909 17 C 0.184 3.816 18 N -0.602 5.602 19 C -0.231 4.231 20 H 0.079 0.921 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.145 3.855 28 C -0.112 4.112 29 H 0.090 0.910 30 C 0.111 3.889 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.162 0.838 39 H 0.144 0.856 40 H 0.153 0.847 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.045 0.955 44 H 0.052 0.948 45 H 0.252 0.748 46 H 0.038 0.962 47 H 0.020 0.980 48 H 0.079 0.921 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.124 6.364 16.065 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.022 3.978 3 C -0.207 4.207 4 O -0.182 6.182 5 C 0.189 3.811 6 N -0.271 5.271 7 C 0.001 3.999 8 C -0.238 4.238 9 C -0.034 4.034 10 C -0.205 4.205 11 C 0.368 3.632 12 O -0.403 6.403 13 N -0.337 5.337 14 C 0.000 4.000 15 C -0.142 4.142 16 H 0.109 0.891 17 C 0.059 3.941 18 N -0.329 5.329 19 C -0.359 4.359 20 H 0.097 0.903 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.019 3.981 28 C -0.131 4.131 29 H 0.108 0.892 30 C -0.012 4.012 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.180 0.820 39 H 0.162 0.838 40 H 0.171 0.829 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.038 0.962 48 H 0.097 0.903 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.895 7.673 16.528 21.231 hybrid contribution 0.820 -1.460 -0.719 1.822 sum -10.075 6.213 15.809 19.750 Atomic orbital electron populations 1.22216 0.94915 1.02763 1.02603 1.22404 0.94330 0.93133 0.87977 1.21882 1.02263 0.93722 1.02798 1.86480 1.78606 1.15121 1.37945 1.19700 0.88393 0.84822 0.88167 1.67368 1.23086 1.12756 1.23843 1.22603 0.90848 0.87641 0.98759 1.21954 1.05819 1.02162 0.93910 1.21983 0.90874 0.92093 0.98448 1.19921 1.11607 0.94292 0.94636 1.17368 0.78730 0.85014 0.82062 1.90792 1.44461 1.18256 1.86819 1.48108 1.58525 1.21461 1.05590 1.21825 1.01059 0.96557 0.80509 1.23162 0.98142 0.96291 0.96647 0.89068 1.21125 0.91091 0.81480 1.00377 1.44227 1.07355 1.02472 1.78856 1.19063 0.93097 0.84801 1.38915 0.90325 1.24808 0.97071 0.96873 1.01532 1.69966 1.13546 1.20949 1.52177 0.86065 0.80116 0.82097 0.77575 1.20505 1.21742 1.21777 1.21164 0.88220 0.92577 0.96155 1.22955 0.98575 0.98139 0.93471 0.89187 1.22258 0.96140 0.85466 0.97292 0.92098 0.91927 0.91110 0.89326 0.90662 0.91653 0.91495 0.82037 0.83810 0.82926 0.92181 0.90792 0.93701 0.93015 0.93718 0.94431 0.96190 0.90264 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.53 37.15 0.35 -1.26 16 2 C 0.08 0.89 3.11 -26.73 -0.08 0.81 16 3 C -0.15 -1.45 9.56 37.16 0.36 -1.09 16 4 O -0.28 -4.25 8.47 -34.81 -0.29 -4.54 16 5 C 0.37 5.52 7.44 -16.61 -0.12 5.40 16 6 N -0.55 -6.89 8.64 -12.98 -0.11 -7.00 16 7 C 0.16 1.57 11.17 -17.49 -0.20 1.37 16 8 C -0.22 -2.20 10.09 -39.50 -0.40 -2.60 16 9 C -0.01 -0.11 8.42 -38.89 -0.33 -0.44 16 10 C -0.20 -3.09 5.43 -104.69 -0.57 -3.66 16 11 C 0.58 10.61 7.34 -12.48 -0.09 10.52 16 12 O -0.53 -11.21 16.36 -11.54 -0.19 -11.40 16 13 N -0.60 -10.41 3.31 -173.40 -0.57 -10.98 16 14 C 0.12 2.16 6.24 -3.58 -0.02 2.13 16 15 C -0.12 -2.16 4.02 -88.60 -0.36 -2.52 16 16 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 17 C 0.18 4.22 4.75 -3.61 -0.02 4.21 16 18 N -0.60 -14.34 3.37 -171.93 -0.58 -14.92 16 19 C -0.23 -6.10 10.25 -15.06 -0.15 -6.25 16 20 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 21 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 22 N -0.92 -26.24 10.25 55.49 0.57 -25.67 16 23 Si 0.91 21.51 29.55 -169.99 -5.02 16.48 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.15 2.73 6.37 -3.42 -0.02 2.70 16 28 C -0.11 -1.77 4.19 -88.24 -0.37 -2.14 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 30 C 0.11 1.72 4.55 -3.28 -0.01 1.70 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 1.00 6.98 -51.93 -0.36 0.63 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 40 H 0.15 2.00 5.73 -52.49 -0.30 1.70 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.43 7.44 -51.93 -0.39 1.04 16 43 H 0.04 1.16 7.45 -51.93 -0.39 0.77 16 44 H 0.05 1.34 6.51 -51.93 -0.34 1.01 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.04 0.67 7.95 -51.93 -0.41 0.26 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.08 1.33 6.11 -51.93 -0.32 1.02 16 49 H 0.06 0.86 7.57 -51.93 -0.39 0.46 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -32.76 388.62 -9.99 -42.76 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.52 Total: 0.81 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -2.13 Total: 8.61 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.70 Total: -58.58 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.48 Total: -15.94 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.76 -9.99 -42.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049255679.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.366 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds