Wall clock time and date at job start Wed Apr 1 2020 04:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47193 * 2 1 4 4 O 1.42900 * 109.47049 * 240.00264 * 2 1 3 5 5 C 1.35430 * 116.99812 * 269.99379 * 4 2 1 6 6 N 1.32236 * 119.79720 * 0.02562 * 5 4 2 7 7 C 1.31884 * 121.79493 * 179.97438 * 6 5 4 8 8 C 1.38354 * 121.18818 * 359.97438 * 7 6 5 9 9 C 1.38336 * 119.45824 * 359.97438 * 8 7 6 10 10 C 1.39989 * 118.34780 * 359.73041 * 9 8 7 11 11 C 1.47522 * 120.59353 * 180.28319 * 10 9 8 12 12 O 1.21593 * 119.99671 * 217.37468 * 11 10 9 13 13 N 1.34772 * 120.00370 * 37.38636 * 11 10 9 14 14 C 1.46666 * 125.34178 * 185.27493 * 13 11 10 15 15 C 1.53724 * 107.94519 * 180.53976 * 14 13 11 16 16 H 1.09001 * 112.56315 * 139.71548 * 15 14 13 17 17 C 1.53689 * 109.34286 * 266.24949 * 15 14 13 18 18 N 1.46638 * 108.01095 * 127.55221 * 17 15 14 19 19 C 1.36942 * 125.32942 * 180.81537 * 18 17 15 20 20 H 1.07997 * 120.00145 * 180.02562 * 19 18 17 21 21 C 1.38815 * 119.99627 * 0.02968 * 19 18 17 22 22 N 1.31621 * 120.00355 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99533 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47205 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47292 * 120.00148 * 23 21 19 26 26 H 1.48511 * 109.46731 * 239.99822 * 23 21 19 27 27 C 1.46743 * 109.34418 * 0.84159 * 18 17 15 28 28 C 1.53937 * 106.71819 * 341.65620 * 27 18 17 29 29 H 1.09003 * 113.01065 * 150.83333 * 28 27 18 30 30 C 1.46781 * 125.33687 * 4.95879 * 13 11 10 31 31 H 1.09002 * 109.47602 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47508 * 60.00034 * 1 2 3 33 33 H 1.09000 * 109.47472 * 300.00057 * 1 2 3 34 34 H 1.09000 * 109.47038 * 120.00212 * 2 1 3 35 35 H 1.09000 * 109.46958 * 59.99628 * 3 2 1 36 36 H 1.08998 * 109.47288 * 179.97438 * 3 2 1 37 37 H 1.08999 * 109.46866 * 300.00359 * 3 2 1 38 38 H 1.08004 * 119.40232 * 179.97438 * 7 6 5 39 39 H 1.08003 * 120.27025 * 179.97438 * 8 7 6 40 40 H 1.08001 * 120.82255 * 180.02562 * 9 8 7 41 41 H 1.09004 * 109.76643 * 300.15666 * 14 13 11 42 42 H 1.08993 * 109.77434 * 60.91579 * 14 13 11 43 43 H 1.08997 * 109.76472 * 247.20143 * 17 15 14 44 44 H 1.09005 * 109.75639 * 7.91513 * 17 15 14 45 45 H 0.96996 * 119.99691 * 180.02562 * 22 21 19 46 46 H 1.08998 * 110.01094 * 222.34124 * 27 18 17 47 47 H 1.08999 * 110.00946 * 100.96996 * 27 18 17 48 48 H 1.09007 * 110.02630 * 280.78006 * 30 13 11 49 49 H 1.09003 * 110.02419 * 42.19573 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2113 -2.0084 -1.0655 6 7 1.9695 -2.6254 0.0789 7 6 2.1550 -3.9233 0.2213 8 6 2.6129 -4.7009 -0.8274 9 6 2.8810 -4.1075 -2.0479 10 6 2.6708 -2.7295 -2.1775 11 6 2.9347 -2.0470 -3.4584 12 8 3.4119 -0.9286 -3.4643 13 7 2.6466 -2.6628 -4.6221 14 6 2.9595 -2.1428 -5.9573 15 6 2.4440 -3.1554 -6.9927 16 1 1.9857 -2.6737 -7.8565 17 6 3.5801 -4.1180 -7.3728 18 7 3.0892 -5.4891 -7.2011 19 6 3.8192 -6.6256 -7.4264 20 1 3.3697 -7.5955 -7.2724 21 6 5.1369 -6.5310 -7.8526 22 7 5.6845 -5.3490 -8.0407 23 14 6.1324 -8.0814 -8.1606 24 1 5.2925 -9.2731 -7.8785 25 1 6.5756 -8.1118 -9.5776 26 1 7.3207 -8.0917 -7.2699 27 6 1.6930 -5.4526 -6.7508 28 6 1.4434 -4.0385 -6.1962 29 1 0.4073 -3.7165 -6.3009 30 6 1.9764 -3.9622 -4.7517 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.1299 1.4426 0.0005 37 1 1.6766 1.9564 -0.8900 38 1 1.9455 -4.3876 1.1737 39 1 2.7599 -5.7626 -0.6943 40 1 3.2389 -4.6936 -2.8815 41 1 2.4659 -1.1820 -6.1037 42 1 4.0377 -2.0236 -6.0633 43 1 3.8677 -3.9568 -8.4117 44 1 4.4386 -3.9498 -6.7224 45 1 6.6052 -5.2830 -8.3389 46 1 1.5343 -6.1938 -5.9676 47 1 1.0253 -5.6474 -7.5900 48 1 2.6871 -4.7685 -4.5700 49 1 1.1487 -4.0273 -4.0455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049255679.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:26 Heat of formation + Delta-G solvation = -19.163171 kcal Electronic energy + Delta-G solvation = -31318.761774 eV Core-core repulsion = 27246.395495 eV Total energy + Delta-G solvation = -4072.366279 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.16345 -41.18602 -39.50766 -39.18716 -36.58772 -34.33942 -34.26501 -33.66656 -31.92298 -31.18174 -31.05323 -28.20346 -27.53379 -27.07593 -25.86288 -24.84712 -23.99372 -22.22349 -21.78997 -21.15842 -20.73641 -19.44631 -18.89976 -18.30527 -17.89199 -17.57038 -16.83874 -16.51738 -16.46596 -16.19179 -15.83425 -15.49877 -15.38158 -14.97086 -14.79068 -14.69546 -14.28567 -14.09212 -14.03442 -13.67876 -13.60469 -13.33461 -13.30421 -13.25563 -13.21578 -12.94909 -12.88260 -12.73518 -12.67252 -11.94165 -11.92910 -11.88861 -11.84862 -11.78850 -11.55873 -11.38285 -11.27282 -10.98044 -10.70644 -10.59188 -9.75713 -9.50876 -8.84855 -7.82541 -5.17390 -0.30743 0.20080 1.47569 1.47935 1.58148 1.65418 1.88347 1.97860 2.51326 2.70696 3.13761 3.32658 3.36365 3.52007 3.67045 3.76544 3.85507 3.90040 3.94622 3.97394 4.00845 4.14243 4.22966 4.24711 4.30905 4.45746 4.51811 4.53327 4.66336 4.69887 4.79930 4.80644 4.83236 4.84866 4.87959 4.92870 5.05766 5.08824 5.10431 5.18130 5.22605 5.24435 5.38288 5.44276 5.52159 5.64868 5.79623 6.23389 6.23741 6.41629 6.71621 7.02448 7.13515 7.82963 8.44394 9.27607 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.002953 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.904531 B = 9479.366951 C =10097.156065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.069 3.931 3 C -0.146 4.146 4 O -0.305 6.305 5 C 0.356 3.644 6 N -0.549 5.549 7 C 0.169 3.831 8 C -0.204 4.204 9 C -0.013 4.013 10 C -0.228 4.228 11 C 0.576 3.424 12 O -0.570 6.570 13 N -0.605 5.605 14 C 0.126 3.874 15 C -0.111 4.111 16 H 0.115 0.885 17 C 0.198 3.802 18 N -0.622 5.622 19 C -0.232 4.232 20 H 0.089 0.911 21 C -0.068 4.068 22 N -0.952 5.952 23 Si 0.974 3.026 24 H -0.260 1.260 25 H -0.297 1.297 26 H -0.297 1.297 27 C 0.141 3.859 28 C -0.095 4.095 29 H 0.131 0.869 30 C 0.116 3.884 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.208 0.792 39 H 0.179 0.821 40 H 0.146 0.854 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.004 0.996 44 H 0.010 0.990 45 H 0.243 0.757 46 H 0.053 0.947 47 H 0.031 0.969 48 H 0.063 0.937 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.877 4.726 18.521 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.014 3.986 3 C -0.203 4.203 4 O -0.212 6.212 5 C 0.177 3.823 6 N -0.274 5.274 7 C 0.012 3.988 8 C -0.224 4.224 9 C -0.039 4.039 10 C -0.234 4.234 11 C 0.365 3.635 12 O -0.451 6.451 13 N -0.337 5.337 14 C 0.003 3.997 15 C -0.131 4.131 16 H 0.133 0.867 17 C 0.073 3.927 18 N -0.348 5.348 19 C -0.361 4.361 20 H 0.107 0.893 21 C -0.261 4.261 22 N -0.602 5.602 23 Si 0.803 3.197 24 H -0.185 1.185 25 H -0.225 1.225 26 H -0.225 1.225 27 C 0.016 3.984 28 C -0.114 4.114 29 H 0.149 0.851 30 C -0.006 4.006 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.225 0.775 39 H 0.197 0.803 40 H 0.164 0.836 41 H 0.092 0.908 42 H 0.062 0.938 43 H 0.023 0.977 44 H 0.028 0.972 45 H 0.052 0.948 46 H 0.071 0.929 47 H 0.049 0.951 48 H 0.081 0.919 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.706 6.002 18.991 24.178 hybrid contribution 1.653 -1.007 -1.397 2.387 sum -12.053 4.995 17.594 21.904 Atomic orbital electron populations 1.22161 0.93489 1.02473 1.03539 1.22692 0.95508 0.93453 0.86960 1.21912 1.01435 0.93126 1.03871 1.86450 1.78984 1.15787 1.39937 1.19804 0.88935 0.84884 0.88651 1.67489 1.23217 1.14061 1.22596 1.23436 0.88390 0.86632 1.00337 1.22333 1.03866 1.03786 0.92371 1.22014 0.91184 0.90989 0.99730 1.19803 1.14612 0.95442 0.93570 1.17913 0.77741 0.84657 0.83141 1.90747 1.46474 1.20301 1.87556 1.48184 1.58363 1.21979 1.05190 1.21698 0.99451 0.97342 0.81172 1.22999 0.96877 0.95471 0.97713 0.86745 1.20749 0.92032 0.82900 0.97012 1.44506 1.09483 1.01981 1.78836 1.19482 0.93350 0.86136 1.37143 0.89345 1.25617 0.98491 0.99458 1.02515 1.70209 1.13168 1.22937 1.53847 0.85071 0.78488 0.79595 0.76568 1.18453 1.22467 1.22476 1.21380 0.85396 0.94798 0.96871 1.23016 1.00049 0.95650 0.92716 0.85072 1.22287 0.96447 0.83987 0.97881 0.92924 0.92637 0.88450 0.89182 0.87528 0.92971 0.92387 0.77527 0.80319 0.83644 0.90769 0.93819 0.97733 0.97208 0.94765 0.92856 0.95085 0.91866 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.53 71.98 0.69 -2.16 16 2 C 0.07 1.54 3.11 30.59 0.10 1.64 16 3 C -0.15 -2.77 9.56 71.98 0.69 -2.08 16 4 O -0.31 -9.55 8.47 -71.17 -0.60 -10.16 16 5 C 0.36 10.51 7.44 85.13 0.63 11.15 16 6 N -0.55 -12.68 8.64 -307.99 -2.66 -15.34 16 7 C 0.17 2.69 11.17 84.71 0.95 3.64 16 8 C -0.20 -3.40 10.09 22.32 0.23 -3.17 16 9 C -0.01 -0.33 8.42 22.72 0.19 -0.14 16 10 C -0.23 -7.09 5.43 -19.91 -0.11 -7.20 16 11 C 0.58 21.74 7.34 86.69 0.64 22.38 16 12 O -0.57 -25.66 16.36 12.08 0.20 -25.47 16 13 N -0.61 -21.12 3.31 -820.77 -2.72 -23.84 16 14 C 0.13 4.56 6.24 86.59 0.54 5.10 16 15 C -0.11 -3.89 4.02 -9.49 -0.04 -3.93 16 16 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 17 C 0.20 9.49 4.75 86.58 0.41 9.90 16 18 N -0.62 -29.74 3.37 -697.87 -2.35 -32.09 16 19 C -0.23 -12.31 10.25 84.03 0.86 -11.45 16 20 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 21 C -0.07 -3.79 5.48 84.86 0.47 -3.32 16 22 N -0.95 -57.08 10.25 21.65 0.22 -56.86 16 23 Si 0.97 44.97 29.55 68.60 2.03 47.00 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 27 C 0.14 4.97 6.37 86.65 0.55 5.52 16 28 C -0.09 -2.78 4.19 -9.25 -0.04 -2.81 16 29 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 30 C 0.12 3.42 4.55 86.72 0.39 3.81 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.09 1.93 6.98 -2.39 -0.02 1.91 16 35 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 38 H 0.21 1.39 8.06 -2.91 -0.02 1.36 16 39 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.15 3.73 5.73 -2.91 -0.02 3.72 16 41 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.04 1.83 7.44 -2.39 -0.02 1.81 16 43 H 0.00 0.24 7.45 -2.39 -0.02 0.23 16 44 H 0.01 0.54 6.51 -2.38 -0.02 0.53 16 45 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 46 H 0.05 1.74 7.95 -2.39 -0.02 1.72 16 47 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.06 2.09 6.11 -2.38 -0.01 2.07 16 49 H 0.09 2.24 7.57 -2.39 -0.02 2.22 16 Total: -1.00 -77.02 388.62 2.21 -74.81 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.95 Total: 15.06 kcal Atomic # 6 Polarization: 19.73 SS G_CDS: 7.14 Total: 26.87 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -7.51 Total: -128.12 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.41 Total: -35.62 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -77.02 2.21 -74.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049255679.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.652 kcal (2) G-P(sol) polarization free energy of solvation -77.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds