Wall clock time and date at job start Wed Apr 1 2020 04:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.47100 * 2 1 4 4 O 1.21280 * 120.00072 * 0.02562 * 3 2 1 5 5 N 1.34783 * 119.99825 * 179.97438 * 3 2 1 6 6 C 1.39955 * 119.99803 * 186.60353 * 5 3 2 7 7 C 1.38990 * 119.99546 * 213.14367 * 6 5 3 8 8 C 1.38213 * 120.21702 * 179.97438 * 7 6 5 9 9 C 1.38020 * 120.22912 * 359.97438 * 8 7 6 10 10 C 1.39581 * 119.98937 * 0.02562 * 9 8 7 11 11 C 1.47861 * 120.10649 * 179.97438 * 10 9 8 12 12 O 1.21554 * 120.00108 * 187.50987 * 11 10 9 13 13 N 1.34781 * 120.00130 * 7.50887 * 11 10 9 14 14 C 1.47021 * 125.64822 * 354.08529 * 13 11 10 15 15 C 1.54327 * 107.27076 * 181.02515 * 14 13 11 16 16 H 1.09001 * 110.71340 * 263.82993 * 15 14 13 17 17 N 1.46498 * 110.71823 * 140.55692 * 15 14 13 18 18 C 1.36937 * 120.00007 * 86.45417 * 17 15 14 19 19 H 1.07998 * 120.00035 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99951 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99895 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99964 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47430 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47420 * 120.00044 * 22 20 18 25 25 H 1.48508 * 109.46927 * 239.99656 * 22 20 18 26 26 C 1.55155 * 102.94237 * 22.19064 * 15 14 13 27 27 H 1.09002 * 111.00575 * 82.61089 * 26 15 14 28 28 C 1.52996 * 111.00445 * 206.42579 * 26 15 14 29 29 C 1.47429 * 125.64715 * 173.78094 * 13 11 10 30 30 C 1.38598 * 119.99829 * 33.12222 * 6 5 3 31 31 H 1.08999 * 109.46731 * 299.99994 * 1 2 3 32 32 H 1.08995 * 109.46792 * 59.99931 * 1 2 3 33 33 H 1.08995 * 109.47442 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47459 * 240.00097 * 2 1 3 35 35 H 1.09000 * 109.47483 * 119.99911 * 2 1 3 36 36 H 0.96997 * 119.99778 * 6.60329 * 5 3 2 37 37 H 1.07993 * 119.89300 * 359.97375 * 7 6 5 38 38 H 1.08003 * 119.88808 * 179.97438 * 8 7 6 39 39 H 1.07997 * 120.00922 * 180.27878 * 9 8 7 40 40 H 1.08997 * 109.87965 * 300.44020 * 14 13 11 41 41 H 1.08994 * 109.88290 * 61.60623 * 14 13 11 42 42 H 0.97002 * 119.99788 * 266.44834 * 17 15 14 43 43 H 0.97001 * 120.00274 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.47044 * 60.00003 * 28 26 15 45 45 H 1.09004 * 109.47376 * 180.02562 * 28 26 15 46 46 H 1.09001 * 109.47228 * 300.00067 * 28 26 15 47 47 H 1.09000 * 110.35941 * 274.74339 * 29 13 11 48 48 H 1.08997 * 110.36649 * 37.06409 * 29 13 11 49 49 H 1.07997 * 120.11315 * 359.97438 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8254 2.9787 0.1399 7 6 4.9938 3.3716 -0.5022 8 6 5.4598 4.6659 -0.3681 9 6 4.7678 5.5771 0.4038 10 6 3.5934 5.1923 1.0526 11 6 2.8503 6.1662 1.8806 12 8 1.9071 5.7977 2.5531 13 7 3.2187 7.4627 1.8898 14 6 4.4060 8.0208 1.2262 15 6 4.4323 9.5335 1.5306 16 1 3.9819 10.0989 0.7147 17 7 5.8021 9.9875 1.7835 18 6 6.6036 10.3610 0.7379 19 1 6.2261 10.3206 -0.2731 20 6 7.9013 10.7917 0.9776 21 7 8.3611 10.8415 2.2099 22 14 8.9944 11.3019 -0.4486 23 1 8.2461 11.1558 -1.7228 24 1 9.4056 12.7182 -0.2751 25 1 10.2010 10.4367 -0.4816 26 6 3.5710 9.6444 2.8163 27 1 4.1616 9.4148 3.7033 28 6 2.9316 11.0296 2.9303 29 6 2.4943 8.5570 2.5617 30 6 3.1234 3.8859 0.9178 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.9868 0.9353 -0.0957 37 1 5.5394 2.6632 -1.1078 38 1 6.3686 4.9653 -0.8691 39 1 5.1327 6.5887 0.5024 40 1 5.3063 7.5480 1.6184 41 1 4.3391 7.8603 0.1502 42 1 6.1411 10.0236 2.6916 43 1 9.2678 11.1428 2.3775 44 1 2.2926 11.2072 2.0653 45 1 2.3339 11.0802 3.8405 46 1 3.7130 11.7887 2.9667 47 1 1.7068 8.9437 1.9149 48 1 2.0748 8.2105 3.5061 49 1 2.2149 3.5827 1.4169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054715496.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:06 Heat of formation + Delta-G solvation = -32.189642 kcal Electronic energy + Delta-G solvation = -30129.950509 eV Core-core repulsion = 26057.019360 eV Total energy + Delta-G solvation = -4072.931149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.93864 -41.20682 -39.47003 -38.80268 -36.07245 -35.80705 -34.14732 -33.74502 -32.62453 -32.07851 -30.73049 -29.27486 -27.65148 -26.17994 -25.71635 -24.67885 -23.54274 -22.63470 -21.47132 -21.24619 -21.05537 -19.05810 -18.91856 -18.31208 -17.63114 -17.37312 -17.02482 -16.80456 -16.51113 -16.30264 -15.66952 -15.60907 -15.32394 -15.14262 -14.84854 -14.67348 -14.60257 -14.35179 -14.18333 -13.90257 -13.70589 -13.56349 -13.19969 -13.05384 -12.88204 -12.85723 -12.76718 -12.67036 -12.55974 -12.10508 -12.05565 -12.01869 -11.82947 -11.66870 -11.58467 -11.39676 -11.16895 -10.96077 -10.80642 -10.10737 -9.69755 -9.24201 -9.02864 -7.90820 -5.20899 -0.24308 0.22477 1.46844 1.52527 1.54317 1.63057 1.76825 1.82272 2.06039 2.59629 2.80064 3.27092 3.39716 3.64558 3.69281 3.79803 3.82222 3.89549 4.06612 4.15671 4.18657 4.20274 4.24452 4.32162 4.39676 4.45157 4.46233 4.57047 4.62887 4.70525 4.81466 4.84387 4.84824 4.96047 5.02648 5.07673 5.08631 5.11989 5.19007 5.24420 5.30963 5.32326 5.39030 5.40182 5.48754 5.59551 5.89602 6.28782 6.36467 6.38582 6.96971 7.11769 7.37502 8.07454 8.32537 9.32092 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.002655 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.478739 B =10543.140737 C =12256.583120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.498 3.502 4 O -0.570 6.570 5 N -0.660 5.660 6 C 0.128 3.872 7 C -0.104 4.104 8 C -0.104 4.104 9 C -0.142 4.142 10 C -0.134 4.134 11 C 0.563 3.437 12 O -0.586 6.586 13 N -0.606 5.606 14 C 0.076 3.924 15 C 0.170 3.830 16 H 0.074 0.926 17 N -0.719 5.719 18 C -0.237 4.237 19 H 0.083 0.917 20 C -0.069 4.069 21 N -0.967 5.967 22 Si 0.967 3.033 23 H -0.263 1.263 24 H -0.300 1.300 25 H -0.296 1.296 26 C -0.102 4.102 27 H 0.072 0.928 28 C -0.128 4.128 29 C 0.114 3.886 30 C -0.088 4.088 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.433 0.567 37 H 0.173 0.827 38 H 0.161 0.839 39 H 0.165 0.835 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.376 0.624 43 H 0.250 0.750 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.050 0.950 47 H 0.084 0.916 48 H 0.073 0.927 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.980 -21.155 -6.555 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.288 3.712 4 O -0.448 6.448 5 N -0.308 5.308 6 C 0.034 3.966 7 C -0.125 4.125 8 C -0.122 4.122 9 C -0.160 4.160 10 C -0.137 4.137 11 C 0.355 3.645 12 O -0.468 6.468 13 N -0.337 5.337 14 C -0.049 4.049 15 C 0.059 3.941 16 H 0.092 0.908 17 N -0.358 5.358 18 C -0.368 4.368 19 H 0.101 0.899 20 C -0.262 4.262 21 N -0.617 5.617 22 Si 0.797 3.203 23 H -0.187 1.187 24 H -0.228 1.228 25 H -0.223 1.223 26 C -0.122 4.122 27 H 0.091 0.909 28 C -0.185 4.185 29 C -0.009 4.009 30 C -0.109 4.109 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.149 0.851 35 H 0.142 0.858 36 H 0.274 0.726 37 H 0.190 0.810 38 H 0.179 0.821 39 H 0.182 0.818 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.208 0.792 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.102 0.898 48 H 0.091 0.909 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.033 -20.775 -6.377 23.936 hybrid contribution 1.066 0.317 0.060 1.114 sum -8.967 -20.457 -6.317 23.212 Atomic orbital electron populations 1.21578 0.93847 1.02895 1.01660 1.21724 0.97850 0.89908 1.07486 1.22018 0.81445 0.93809 0.73929 1.90777 1.56378 1.48437 1.49160 1.43507 1.08199 1.06786 1.72327 1.17681 0.95728 0.86068 0.97124 1.21503 0.95372 0.97389 0.98201 1.21385 1.00520 0.92499 0.97839 1.23022 0.93547 1.03630 0.95840 1.19671 0.97958 0.94100 1.02004 1.18384 0.83241 0.81517 0.81379 1.90700 1.31752 1.79055 1.45295 1.48385 1.26976 1.06150 1.52178 1.23539 0.86507 0.97600 0.97263 1.21493 0.85567 0.90625 0.96382 0.90790 1.42470 1.09542 1.77315 1.06491 1.19652 0.93488 1.34627 0.89078 0.89903 1.25489 0.99129 1.03224 0.98340 1.69819 1.16930 1.55049 1.19898 0.85167 0.78855 0.76689 0.79589 1.18710 1.22758 1.22311 1.22566 0.95686 0.95730 0.98226 0.90910 1.21569 1.00341 0.93911 1.02690 1.22442 0.94891 0.85744 0.97778 1.21017 0.99977 0.92472 0.97445 0.94195 0.93594 0.89039 0.85105 0.85813 0.72628 0.80967 0.82095 0.81831 0.90811 0.90037 0.79166 0.94142 0.91384 0.91079 0.93056 0.89793 0.90885 0.86878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.20 71.98 0.66 -1.22 16 2 C -0.13 -1.21 6.42 29.85 0.19 -1.02 16 3 C 0.50 9.95 7.55 87.66 0.66 10.61 16 4 O -0.57 -18.26 13.71 -3.03 -0.04 -18.31 16 5 N -0.66 -10.56 5.34 -303.59 -1.62 -12.18 16 6 C 0.13 3.02 6.27 38.11 0.24 3.26 16 7 C -0.10 -1.91 9.95 22.44 0.22 -1.69 16 8 C -0.10 -2.28 10.02 22.21 0.22 -2.05 16 9 C -0.14 -4.11 8.61 22.54 0.19 -3.92 16 10 C -0.13 -4.57 5.87 -20.10 -0.12 -4.68 16 11 C 0.56 21.81 7.81 86.79 0.68 22.48 16 12 O -0.59 -26.25 16.60 -3.89 -0.06 -26.32 16 13 N -0.61 -20.97 3.33 -827.99 -2.75 -23.73 16 14 C 0.08 2.56 4.62 86.73 0.40 2.96 16 15 C 0.17 6.07 3.06 46.18 0.14 6.22 16 16 H 0.07 2.59 8.02 -2.39 -0.02 2.57 16 17 N -0.72 -32.62 5.18 -317.33 -1.64 -34.27 16 18 C -0.24 -11.85 9.98 84.03 0.84 -11.01 16 19 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 20 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 21 N -0.97 -55.92 13.06 21.65 0.28 -55.64 16 22 Si 0.97 43.23 29.55 68.60 2.03 45.26 16 23 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 24 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 26 C -0.10 -3.19 3.26 -9.33 -0.03 -3.22 16 27 H 0.07 2.46 8.00 -2.39 -0.02 2.44 16 28 C -0.13 -3.42 9.31 71.98 0.67 -2.75 16 29 C 0.11 3.51 6.41 86.93 0.56 4.06 16 30 C -0.09 -2.88 8.20 22.66 0.19 -2.69 16 31 H 0.04 0.71 8.10 -2.39 -0.02 0.69 16 32 H 0.04 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.12 0.55 8.14 -2.39 -0.02 0.54 16 36 H 0.43 2.65 8.82 -92.71 -0.82 1.83 16 37 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.16 4.92 2.74 -8.01 -0.02 4.90 16 40 H 0.07 2.70 6.63 -2.39 -0.02 2.68 16 41 H 0.08 2.57 6.74 -2.39 -0.02 2.55 16 42 H 0.38 18.77 7.71 -92.71 -0.72 18.06 16 43 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 44 H 0.07 1.63 8.07 -2.39 -0.02 1.61 16 45 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.08 2.34 7.99 -2.39 -0.02 2.32 16 48 H 0.07 2.30 7.98 -2.39 -0.02 2.28 16 49 H 0.11 4.38 6.05 -2.91 -0.02 4.36 16 Total: -1.00 -77.49 398.04 1.82 -75.68 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: -0.56 Total: 37.37 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 6.18 Total: 12.13 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -5.73 Total: -125.81 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -0.11 Total: -44.63 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -77.49 1.82 -75.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054715496.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.488 kcal (2) G-P(sol) polarization free energy of solvation -77.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds