Wall clock time and date at job start Wed Apr 1 2020 04:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47280 * 2 1 4 4 O 1.42903 * 109.47438 * 179.97438 * 3 2 1 5 5 C 1.35641 * 117.00264 * 179.97438 * 4 3 2 6 6 C 1.39347 * 120.54271 * 359.72147 * 5 4 3 7 7 C 1.38295 * 118.44235 * 179.73685 * 6 5 4 8 8 C 1.38771 * 119.44509 * 0.56017 * 7 6 5 9 9 N 1.31378 * 121.06202 * 359.70476 * 8 7 6 10 10 C 1.32856 * 121.70084 * 359.97438 * 9 8 7 11 11 C 1.47822 * 119.78428 * 179.97438 * 10 9 8 12 12 O 1.21557 * 120.00086 * 180.02562 * 11 10 9 13 13 N 1.34779 * 120.00190 * 0.03020 * 11 10 9 14 14 C 1.47391 * 135.84877 * 359.62490 * 13 11 10 15 15 C 1.52076 * 87.40483 * 154.39246 * 14 13 11 16 16 C 1.47394 * 135.85299 * 179.97438 * 13 11 10 17 17 C 1.53511 * 117.20931 * 267.27583 * 15 14 13 18 18 C 1.54631 * 102.70753 * 262.93153 * 17 15 14 19 19 N 1.47150 * 107.37397 * 339.38797 * 18 17 15 20 20 C 1.36941 * 125.57905 * 179.04056 * 19 18 17 21 21 H 1.07998 * 119.99695 * 174.82995 * 20 19 18 22 22 C 1.38810 * 119.99985 * 354.82647 * 20 19 18 23 23 N 1.31616 * 120.00183 * 7.06377 * 22 20 19 24 24 Si 1.86796 * 119.99988 * 187.06682 * 22 20 19 25 25 H 1.48498 * 109.47446 * 94.98526 * 24 22 20 26 26 H 1.48502 * 109.47257 * 214.98681 * 24 22 20 27 27 H 1.48502 * 109.47197 * 334.98573 * 24 22 20 28 28 C 1.47753 * 108.84000 * 359.08340 * 19 18 17 29 29 H 1.08999 * 109.46556 * 60.00533 * 1 2 3 30 30 H 1.09001 * 109.47404 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47455 * 300.00912 * 1 2 3 32 32 H 1.08997 * 109.47455 * 239.99088 * 2 1 3 33 33 H 1.08999 * 109.46556 * 119.99467 * 2 1 3 34 34 H 1.09004 * 109.46801 * 299.99753 * 3 2 1 35 35 H 1.08997 * 109.47621 * 59.99189 * 3 2 1 36 36 H 1.08003 * 120.77716 * 359.97438 * 6 5 4 37 37 H 1.08001 * 120.27771 * 180.26666 * 7 6 5 38 38 H 1.08000 * 119.46361 * 179.72001 * 8 7 6 39 39 H 1.09001 * 113.54234 * 268.99727 * 14 13 11 40 40 H 1.08992 * 113.54449 * 39.68160 * 14 13 11 41 41 H 1.08994 * 113.53987 * 320.31794 * 16 13 11 42 42 H 1.09001 * 113.54176 * 90.93249 * 16 13 11 43 43 H 1.09004 * 110.76900 * 21.23828 * 17 15 14 44 44 H 1.09002 * 110.76738 * 144.63071 * 17 15 14 45 45 H 1.09008 * 109.86442 * 98.83453 * 18 17 15 46 46 H 1.08994 * 109.86769 * 219.93649 * 18 17 15 47 47 H 0.96999 * 120.00416 * 180.02562 * 23 22 20 48 48 H 1.08997 * 110.40537 * 263.50091 * 28 19 18 49 49 H 1.09001 * 110.40311 * 141.07996 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0849 2.6510 0.0001 6 6 3.3371 3.8268 -0.0067 7 6 4.0097 5.0352 -0.0013 8 6 5.3973 5.0436 -0.0012 9 7 6.0820 3.9223 -0.0003 10 6 5.4811 2.7374 0.0011 11 6 6.2932 1.5022 0.0015 12 8 5.7475 0.4160 0.0022 13 7 7.6387 1.5803 0.0011 14 6 8.6349 2.6665 -0.0063 15 6 9.5979 1.6944 0.6573 16 6 8.7540 0.6168 0.0018 17 6 9.6536 1.6987 2.1913 18 6 10.8720 2.6045 2.4850 19 7 11.6993 2.6361 1.2684 20 6 12.8612 3.3441 1.1133 21 1 13.4418 3.2373 0.2090 22 6 13.2925 4.1990 2.1182 23 7 12.6636 4.2262 3.2741 24 14 14.7655 5.3110 1.8301 25 1 14.2971 6.6470 1.3820 26 1 15.5328 5.4536 3.0935 27 1 15.6378 4.7164 0.7857 28 6 11.0706 1.7799 0.2415 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.6767 1.9562 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.2575 3.7952 -0.0122 37 1 3.4595 5.9646 -0.0020 38 1 5.9229 5.9871 -0.0015 39 1 8.9423 2.9686 -1.0076 40 1 8.3624 3.5116 0.6257 41 1 8.5808 -0.2492 0.6407 42 1 9.0939 0.3435 -0.9972 43 1 8.7432 2.1278 2.6100 44 1 9.8193 0.6919 2.5749 45 1 10.5343 3.6117 2.7296 46 1 11.4479 2.1934 3.3140 47 1 12.9647 4.8238 3.9762 48 1 11.5242 0.7888 0.2433 49 1 11.1614 2.2385 -0.7432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072941121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:44 Heat of formation + Delta-G solvation = 35.732404 kcal Electronic energy + Delta-G solvation = -30395.832314 eV Core-core repulsion = 26325.846485 eV Total energy + Delta-G solvation = -4069.985828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.13030 -40.21599 -38.56508 -37.86622 -35.53662 -34.32452 -32.72326 -32.04209 -30.77622 -29.39144 -28.57530 -27.04679 -25.97179 -25.73472 -24.49791 -23.53958 -23.01116 -21.79664 -20.24307 -19.85780 -18.46608 -18.15153 -17.36591 -17.03157 -16.69596 -16.61720 -15.67405 -15.45584 -15.25543 -14.79353 -14.64365 -14.61539 -14.28380 -14.01587 -13.75955 -13.69363 -13.08396 -13.01562 -12.80894 -12.49813 -12.34176 -12.30775 -12.07850 -11.94231 -11.81873 -11.69284 -11.35870 -11.03514 -10.96046 -10.84926 -10.58810 -10.33844 -10.15747 -10.07479 -10.04269 -10.00723 -9.78841 -9.55095 -9.33787 -8.70739 -8.52353 -8.29858 -6.77273 -5.67480 -2.99397 0.51498 1.00778 2.75768 2.83659 3.00912 3.43289 3.48578 3.50492 3.78416 4.07531 4.30031 4.35687 4.48183 4.52426 4.54993 4.68172 4.77701 4.81710 4.86632 4.98867 5.08067 5.11427 5.19229 5.24440 5.40150 5.53665 5.56006 5.59210 5.69152 5.69922 5.71259 5.76327 5.83125 5.87472 5.93203 6.03623 6.11828 6.31960 6.32742 6.38109 6.56301 6.64206 6.78007 6.80685 6.98664 7.61189 7.61871 7.70305 7.88222 7.97878 8.30241 8.39717 9.26450 9.86960 10.53812 11.44512 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019485 B = 0.002411 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.680283 B =11609.057021 C =12469.604519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.050 3.950 4 O -0.272 6.272 5 C 0.136 3.864 6 C -0.179 4.179 7 C -0.109 4.109 8 C 0.058 3.942 9 N -0.409 5.409 10 C 0.053 3.947 11 C 0.595 3.405 12 O -0.527 6.527 13 N -0.625 5.625 14 C 0.136 3.864 15 C -0.110 4.110 16 C 0.121 3.879 17 C -0.116 4.116 18 C 0.180 3.820 19 N -0.604 5.604 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.909 3.091 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.154 3.846 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.166 0.834 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.041 0.959 47 H 0.251 0.749 48 H 0.025 0.975 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.082 -1.987 -7.426 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.025 4.025 4 O -0.182 6.182 5 C 0.085 3.915 6 C -0.205 4.205 7 C -0.129 4.129 8 C -0.103 4.103 9 N -0.120 5.120 10 C -0.086 4.086 11 C 0.383 3.617 12 O -0.404 6.404 13 N -0.359 5.359 14 C 0.014 3.986 15 C -0.111 4.111 16 C -0.002 4.002 17 C -0.154 4.154 18 C 0.055 3.945 19 N -0.331 5.331 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.207 1.207 28 C 0.028 3.972 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.183 0.817 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.043 0.957 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -23.492 -2.682 -7.290 24.743 hybrid contribution -0.416 1.032 -0.106 1.118 sum -23.908 -1.650 -7.396 25.080 Atomic orbital electron populations 1.21694 0.94283 1.02610 1.02009 1.21453 0.95682 0.94527 1.04355 1.23023 0.78776 0.99516 1.01200 1.86406 1.20676 1.24700 1.86372 1.19998 0.92194 0.85656 0.93603 1.21713 1.00903 0.91853 1.06070 1.22217 0.95845 0.98337 0.96509 1.22806 0.91297 0.96650 0.99514 1.67825 1.39491 0.97297 1.07417 1.20662 0.88218 0.92925 1.06829 1.17071 0.80038 0.87166 0.77382 1.90812 1.70650 1.27826 1.51067 1.49551 1.02756 1.12627 1.70976 1.22808 0.83062 0.92136 1.00596 1.22237 0.95805 0.95544 0.97553 1.22798 0.82484 0.94246 1.00648 1.22439 1.00374 1.00800 0.91800 1.21214 0.87544 0.96574 0.89133 1.44541 1.25075 1.53801 1.09667 1.19047 0.97510 1.16800 1.02065 0.90413 1.24808 0.99453 0.99981 0.96183 1.69981 1.42263 1.40609 1.03850 0.86140 0.81898 0.81079 0.76914 1.21687 1.21901 1.20678 1.21131 0.88242 0.94622 0.93248 0.92480 0.91628 0.92428 0.90541 0.90476 0.92013 0.91957 0.83852 0.84018 0.81651 0.90022 0.89082 0.90502 0.89786 0.92179 0.91989 0.93386 0.94116 0.93829 0.95726 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.97 6.30 -26.73 -0.17 -1.14 16 3 C 0.05 0.44 4.76 37.16 0.18 0.61 16 4 O -0.27 -3.67 8.20 -40.57 -0.33 -4.00 16 5 C 0.14 1.81 6.71 -38.55 -0.26 1.55 16 6 C -0.18 -1.69 9.13 -39.15 -0.36 -2.05 16 7 C -0.11 -0.92 10.10 -39.36 -0.40 -1.32 16 8 C 0.06 0.62 11.18 -17.55 -0.20 0.43 16 9 N -0.41 -5.88 8.02 -9.71 -0.08 -5.96 16 10 C 0.05 0.82 6.76 -82.89 -0.56 0.26 16 11 C 0.60 10.64 8.05 -12.34 -0.10 10.54 16 12 O -0.53 -10.55 15.91 -16.63 -0.26 -10.82 16 13 N -0.63 -10.56 3.70 -186.86 -0.69 -11.25 16 14 C 0.14 2.27 6.82 -7.32 -0.05 2.22 16 15 C -0.11 -1.92 1.06 -155.23 -0.16 -2.09 16 16 C 0.12 1.88 8.02 -7.47 -0.06 1.82 16 17 C -0.12 -2.23 6.40 -25.61 -0.16 -2.40 16 18 C 0.18 4.36 5.40 -2.83 -0.02 4.34 16 19 N -0.60 -15.15 3.41 -170.53 -0.58 -15.73 16 20 C -0.23 -6.21 10.26 -15.06 -0.15 -6.36 16 21 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 22 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 23 N -0.92 -26.92 10.35 55.49 0.57 -26.34 16 24 Si 0.91 21.98 29.56 -169.99 -5.02 16.95 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.15 3.08 6.70 -3.22 -0.02 3.05 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.43 7.68 -51.93 -0.40 0.03 16 35 H 0.06 0.44 7.71 -51.93 -0.40 0.04 16 36 H 0.14 0.91 6.46 -52.48 -0.34 0.58 16 37 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.08 1.28 8.06 -51.93 -0.42 0.86 16 40 H 0.09 1.62 7.20 -51.93 -0.37 1.25 16 41 H 0.08 1.19 8.13 -51.93 -0.42 0.76 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.05 1.29 7.30 -51.92 -0.38 0.91 16 46 H 0.04 1.09 7.60 -51.93 -0.39 0.70 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.04 0.82 8.00 -51.93 -0.42 0.40 16 LS Contribution 397.14 15.07 5.98 5.98 Total: -1.00 -34.12 397.14 -10.37 -44.48 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.74 Total: -2.05 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -2.22 Total: 8.74 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.78 Total: -59.28 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.60 Total: -14.82 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.12 -10.37 -44.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072941121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.215 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds