Wall clock time and date at job start Wed Apr 1 2020 04:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47280 * 2 1 4 4 O 1.42903 * 109.47438 * 179.97438 * 3 2 1 5 5 C 1.35641 * 117.00264 * 179.97438 * 4 3 2 6 6 C 1.39347 * 120.54271 * 359.72147 * 5 4 3 7 7 C 1.38295 * 118.44235 * 179.73685 * 6 5 4 8 8 C 1.38771 * 119.44509 * 0.56017 * 7 6 5 9 9 N 1.31378 * 121.06202 * 359.70476 * 8 7 6 10 10 C 1.32856 * 121.70084 * 359.97438 * 9 8 7 11 11 C 1.47822 * 119.78428 * 179.97438 * 10 9 8 12 12 O 1.21557 * 120.00086 * 180.02562 * 11 10 9 13 13 N 1.34779 * 120.00190 * 0.03020 * 11 10 9 14 14 C 1.47391 * 135.84877 * 359.62490 * 13 11 10 15 15 C 1.52076 * 87.40483 * 154.39246 * 14 13 11 16 16 C 1.47394 * 135.85299 * 179.97438 * 13 11 10 17 17 C 1.53511 * 117.20931 * 267.27583 * 15 14 13 18 18 C 1.54631 * 102.70753 * 262.93153 * 17 15 14 19 19 N 1.47150 * 107.37397 * 339.38797 * 18 17 15 20 20 C 1.36941 * 125.57905 * 179.04056 * 19 18 17 21 21 H 1.07998 * 119.99695 * 174.82995 * 20 19 18 22 22 C 1.38810 * 119.99985 * 354.82647 * 20 19 18 23 23 N 1.31616 * 120.00183 * 7.06377 * 22 20 19 24 24 Si 1.86796 * 119.99988 * 187.06682 * 22 20 19 25 25 H 1.48498 * 109.47446 * 94.98526 * 24 22 20 26 26 H 1.48502 * 109.47257 * 214.98681 * 24 22 20 27 27 H 1.48502 * 109.47197 * 334.98573 * 24 22 20 28 28 C 1.47753 * 108.84000 * 359.08340 * 19 18 17 29 29 H 1.08999 * 109.46556 * 60.00533 * 1 2 3 30 30 H 1.09001 * 109.47404 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47455 * 300.00912 * 1 2 3 32 32 H 1.08997 * 109.47455 * 239.99088 * 2 1 3 33 33 H 1.08999 * 109.46556 * 119.99467 * 2 1 3 34 34 H 1.09004 * 109.46801 * 299.99753 * 3 2 1 35 35 H 1.08997 * 109.47621 * 59.99189 * 3 2 1 36 36 H 1.08003 * 120.77716 * 359.97438 * 6 5 4 37 37 H 1.08001 * 120.27771 * 180.26666 * 7 6 5 38 38 H 1.08000 * 119.46361 * 179.72001 * 8 7 6 39 39 H 1.09001 * 113.54234 * 268.99727 * 14 13 11 40 40 H 1.08992 * 113.54449 * 39.68160 * 14 13 11 41 41 H 1.08994 * 113.53987 * 320.31794 * 16 13 11 42 42 H 1.09001 * 113.54176 * 90.93249 * 16 13 11 43 43 H 1.09004 * 110.76900 * 21.23828 * 17 15 14 44 44 H 1.09002 * 110.76738 * 144.63071 * 17 15 14 45 45 H 1.09008 * 109.86442 * 98.83453 * 18 17 15 46 46 H 1.08994 * 109.86769 * 219.93649 * 18 17 15 47 47 H 0.96999 * 120.00416 * 180.02562 * 23 22 20 48 48 H 1.08997 * 110.40537 * 263.50091 * 28 19 18 49 49 H 1.09001 * 110.40311 * 141.07996 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0849 2.6510 0.0001 6 6 3.3371 3.8268 -0.0067 7 6 4.0097 5.0352 -0.0013 8 6 5.3973 5.0436 -0.0012 9 7 6.0820 3.9223 -0.0003 10 6 5.4811 2.7374 0.0011 11 6 6.2932 1.5022 0.0015 12 8 5.7475 0.4160 0.0022 13 7 7.6387 1.5803 0.0011 14 6 8.6349 2.6665 -0.0063 15 6 9.5979 1.6944 0.6573 16 6 8.7540 0.6168 0.0018 17 6 9.6536 1.6987 2.1913 18 6 10.8720 2.6045 2.4850 19 7 11.6993 2.6361 1.2684 20 6 12.8612 3.3441 1.1133 21 1 13.4418 3.2373 0.2090 22 6 13.2925 4.1990 2.1182 23 7 12.6636 4.2262 3.2741 24 14 14.7655 5.3110 1.8301 25 1 14.2971 6.6470 1.3820 26 1 15.5328 5.4536 3.0935 27 1 15.6378 4.7164 0.7857 28 6 11.0706 1.7799 0.2415 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.6767 1.9562 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.2575 3.7952 -0.0122 37 1 3.4595 5.9646 -0.0020 38 1 5.9229 5.9871 -0.0015 39 1 8.9423 2.9686 -1.0076 40 1 8.3624 3.5116 0.6257 41 1 8.5808 -0.2492 0.6407 42 1 9.0939 0.3435 -0.9972 43 1 8.7432 2.1278 2.6100 44 1 9.8193 0.6919 2.5749 45 1 10.5343 3.6117 2.7296 46 1 11.4479 2.1934 3.3140 47 1 12.9647 4.8238 3.9762 48 1 11.5242 0.7888 0.2433 49 1 11.1614 2.2385 -0.7432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072941121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:43 Heat of formation + Delta-G solvation = 15.366484 kcal Electronic energy + Delta-G solvation = -30396.715446 eV Core-core repulsion = 26325.846485 eV Total energy + Delta-G solvation = -4070.868961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.18048 -41.44699 -39.46337 -39.19415 -37.26087 -34.93234 -34.11203 -33.44465 -31.73141 -31.09329 -30.16068 -27.74059 -27.47513 -27.09185 -25.91606 -24.86038 -23.90350 -22.46655 -22.11609 -21.05140 -19.79940 -19.17888 -18.54187 -18.47068 -18.00115 -17.44932 -16.95451 -16.72413 -16.66903 -16.24567 -15.79176 -15.55364 -15.51491 -15.44035 -14.80453 -14.69447 -14.26517 -14.08230 -14.07017 -13.71656 -13.67882 -13.56161 -13.26524 -13.04046 -12.98171 -12.85715 -12.74337 -12.54692 -12.22880 -11.98564 -11.98112 -11.88775 -11.80177 -11.69313 -11.64501 -11.26021 -11.15350 -10.85382 -10.63045 -10.46931 -9.80017 -9.44393 -8.82602 -7.79744 -5.13464 -0.37719 0.20659 1.50275 1.51926 1.60629 1.70675 1.77613 2.03124 2.54457 2.80497 3.04976 3.29392 3.43696 3.54302 3.61346 3.66090 3.85055 3.89703 3.92885 3.96948 4.07347 4.09150 4.23405 4.24042 4.35699 4.47903 4.50228 4.51788 4.60656 4.62023 4.73138 4.75281 4.84988 4.88252 4.91550 4.98047 5.01716 5.07257 5.11747 5.14928 5.19849 5.22421 5.30222 5.44792 5.53058 5.69519 5.80915 6.21348 6.24419 6.66004 6.71967 7.14123 7.15542 7.82977 8.48742 9.31495 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019485 B = 0.002411 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.680283 B =11609.057021 C =12469.604519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.043 3.957 4 O -0.304 6.304 5 C 0.126 3.874 6 C -0.171 4.171 7 C -0.085 4.085 8 C 0.048 3.952 9 N -0.438 5.438 10 C 0.007 3.993 11 C 0.588 3.412 12 O -0.562 6.562 13 N -0.629 5.629 14 C 0.146 3.854 15 C -0.102 4.102 16 C 0.127 3.873 17 C -0.101 4.101 18 C 0.193 3.807 19 N -0.624 5.624 20 C -0.235 4.235 21 H 0.087 0.913 22 C -0.068 4.068 23 N -0.952 5.952 24 Si 0.976 3.024 25 H -0.288 1.288 26 H -0.299 1.299 27 H -0.266 1.266 28 C 0.154 3.846 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.180 0.820 37 H 0.189 0.811 38 H 0.188 0.812 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.109 0.891 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.013 0.987 46 H 0.004 0.996 47 H 0.245 0.755 48 H 0.037 0.963 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.167 -0.704 -9.112 27.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C -0.032 4.032 4 O -0.215 6.215 5 C 0.075 3.925 6 C -0.197 4.197 7 C -0.104 4.104 8 C -0.114 4.114 9 N -0.150 5.150 10 C -0.129 4.129 11 C 0.378 3.622 12 O -0.441 6.441 13 N -0.362 5.362 14 C 0.024 3.976 15 C -0.104 4.104 16 C 0.005 3.995 17 C -0.139 4.139 18 C 0.068 3.932 19 N -0.351 5.351 20 C -0.364 4.364 21 H 0.105 0.895 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.805 3.195 25 H -0.215 1.215 26 H -0.226 1.226 27 H -0.191 1.191 28 C 0.028 3.972 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.197 0.803 37 H 0.206 0.794 38 H 0.205 0.795 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.031 0.969 46 H 0.022 0.978 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -25.579 -1.435 -9.013 27.158 hybrid contribution 0.150 0.678 0.409 0.806 sum -25.429 -0.757 -8.605 26.856 Atomic orbital electron populations 1.21661 0.91958 1.03230 1.03052 1.21481 0.97579 0.94208 1.02845 1.23330 0.76671 1.00141 1.03025 1.86370 1.23148 1.25575 1.86424 1.20188 0.91807 0.86869 0.93594 1.22146 1.02498 0.90629 1.04446 1.22711 0.94960 0.99811 0.92932 1.23374 0.92886 0.96336 0.98850 1.67705 1.40837 0.97862 1.08555 1.20383 0.89149 0.92430 1.10959 1.17581 0.80175 0.87909 0.76494 1.90767 1.71196 1.29288 1.52821 1.49577 1.02915 1.12772 1.70954 1.22709 0.82584 0.91497 1.00819 1.22058 0.94843 0.97436 0.96050 1.22832 0.81432 0.93466 1.01777 1.22230 0.97956 1.00184 0.93560 1.20882 0.88694 0.95398 0.88276 1.44822 1.24875 1.54261 1.11118 1.19467 0.98297 1.16542 1.02051 0.89548 1.25650 1.02594 1.01745 0.96119 1.70204 1.43970 1.41344 1.04588 0.85089 0.78778 0.79039 0.76625 1.21461 1.22635 1.19100 1.21286 0.89131 0.94186 0.92554 0.91292 0.91304 0.91441 0.91962 0.92176 0.89865 0.90133 0.80267 0.79378 0.79488 0.88716 0.90505 0.90232 0.87269 0.92029 0.90739 0.96915 0.97787 0.94584 0.94557 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.91 71.98 0.71 -0.54 16 2 C -0.12 -1.90 6.30 30.59 0.19 -1.71 16 3 C 0.04 0.67 4.76 71.98 0.34 1.01 16 4 O -0.30 -8.19 8.20 -68.56 -0.56 -8.75 16 5 C 0.13 3.25 6.71 22.94 0.15 3.40 16 6 C -0.17 -2.67 9.13 22.55 0.21 -2.47 16 7 C -0.08 -1.10 10.10 22.41 0.23 -0.87 16 8 C 0.05 0.92 11.18 84.89 0.95 1.87 16 9 N -0.44 -12.42 8.02 -184.63 -1.48 -13.90 16 10 C 0.01 0.23 6.76 41.93 0.28 0.51 16 11 C 0.59 21.53 8.05 86.78 0.70 22.23 16 12 O -0.56 -23.26 15.91 17.09 0.27 -22.98 16 13 N -0.63 -21.27 3.70 -863.37 -3.19 -24.46 16 14 C 0.15 4.85 6.82 83.77 0.57 5.42 16 15 C -0.10 -3.53 1.06 -52.63 -0.06 -3.59 16 16 C 0.13 3.83 8.02 83.67 0.67 4.51 16 17 C -0.10 -3.96 6.40 31.32 0.20 -3.76 16 18 C 0.19 9.72 5.40 86.81 0.47 10.19 16 19 N -0.62 -31.70 3.41 -693.44 -2.36 -34.06 16 20 C -0.23 -12.97 10.26 84.03 0.86 -12.11 16 21 H 0.09 4.51 7.84 -2.91 -0.02 4.49 16 22 C -0.07 -3.89 5.48 84.86 0.46 -3.43 16 23 N -0.95 -57.78 10.35 21.65 0.22 -57.55 16 24 Si 0.98 45.72 29.56 68.60 2.03 47.75 16 25 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 26 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 27 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 28 C 0.15 5.99 6.70 86.23 0.58 6.57 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 0.92 7.68 -2.39 -0.02 0.90 16 35 H 0.08 0.94 7.71 -2.39 -0.02 0.92 16 36 H 0.18 1.41 6.46 -2.91 -0.02 1.39 16 37 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 38 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.09 2.89 8.06 -2.39 -0.02 2.87 16 40 H 0.08 2.79 7.20 -2.39 -0.02 2.77 16 41 H 0.08 2.38 8.13 -2.39 -0.02 2.36 16 42 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.06 2.39 8.07 -2.38 -0.02 2.37 16 44 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 45 H 0.01 0.72 7.30 -2.38 -0.02 0.70 16 46 H 0.00 0.22 7.60 -2.39 -0.02 0.20 16 47 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 48 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 49 H 0.06 2.06 8.00 -2.39 -0.02 2.04 16 Total: -1.00 -78.79 397.14 3.39 -75.40 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.94 Total: 11.32 kcal Atomic # 6 Polarization: 19.71 SS G_CDS: 7.53 Total: 27.24 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -6.81 Total: -129.97 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.29 Total: -31.74 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -78.79 3.39 -75.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072941121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.767 kcal (2) G-P(sol) polarization free energy of solvation -78.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds