Wall clock time and date at job start Wed Apr 1 2020 04:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 O 1.42905 * 109.46897 * 119.99998 * 2 1 3 5 5 C 1.35687 * 117.00178 * 150.00120 * 4 2 1 6 6 C 1.38894 * 119.62673 * 180.29901 * 5 4 2 7 7 C 1.39569 * 118.94523 * 180.26882 * 6 5 4 8 8 C 1.48169 * 120.88652 * 179.71331 * 7 6 5 9 9 O 1.21513 * 120.00198 * 7.58490 * 8 7 6 10 10 N 1.34784 * 119.99537 * 187.58691 * 8 7 6 11 11 C 1.47806 * 135.01276 * 356.74763 * 10 8 7 12 12 C 1.54647 * 85.79156 * 153.84522 * 11 10 8 13 13 H 1.08999 * 114.44507 * 140.42260 * 12 11 10 14 14 C 1.53019 * 110.83584 * 270.23655 * 12 11 10 15 15 C 1.53096 * 109.45108 * 143.88815 * 14 12 11 16 16 N 1.46623 * 108.04971 * 300.99617 * 15 14 12 17 17 C 1.36935 * 119.89171 * 237.35801 * 16 15 14 18 18 H 1.08003 * 120.00156 * 34.51970 * 17 16 15 19 19 C 1.38819 * 119.99534 * 214.52448 * 17 16 15 20 20 N 1.31614 * 120.00106 * 355.53820 * 19 17 16 21 21 Si 1.86805 * 119.99496 * 175.53664 * 19 17 16 22 22 H 1.48501 * 109.47005 * 90.00128 * 21 19 17 23 23 H 1.48499 * 109.46804 * 209.99752 * 21 19 17 24 24 H 1.48500 * 109.47195 * 329.99730 * 21 19 17 25 25 C 1.45777 * 120.15102 * 57.29419 * 16 15 14 26 26 C 1.46813 * 135.01024 * 176.80447 * 10 8 7 27 27 H 1.09001 * 111.56431 * 94.44541 * 26 10 8 28 28 C 1.39968 * 118.21935 * 359.43839 * 7 6 5 29 29 C 1.37977 * 119.13116 * 0.27495 * 28 7 6 30 30 N 1.31910 * 120.97679 * 0.02562 * 29 28 7 31 31 H 1.09002 * 109.47169 * 300.00163 * 1 2 3 32 32 H 1.08999 * 109.46784 * 60.00124 * 1 2 3 33 33 H 1.09000 * 109.47093 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47064 * 239.99504 * 2 1 3 35 35 H 1.09002 * 109.47107 * 59.99799 * 3 2 1 36 36 H 1.09007 * 109.47270 * 179.97438 * 3 2 1 37 37 H 1.08999 * 109.47066 * 299.99703 * 3 2 1 38 38 H 1.08000 * 120.52300 * 359.97438 * 6 5 4 39 39 H 1.09002 * 113.82213 * 39.62583 * 11 10 8 40 40 H 1.09001 * 113.93005 * 268.07267 * 11 10 8 41 41 H 1.08996 * 109.47601 * 23.89040 * 14 12 11 42 42 H 1.09005 * 109.47205 * 263.87954 * 14 12 11 43 43 H 1.08995 * 109.75710 * 60.64837 * 15 14 12 44 44 H 1.09003 * 109.75717 * 181.35044 * 15 14 12 45 45 H 0.97008 * 119.99788 * 180.02562 * 20 19 17 46 46 H 1.08996 * 108.70471 * 199.78762 * 25 16 15 47 47 H 1.09001 * 108.69282 * 81.78970 * 25 16 15 48 48 H 1.07995 * 120.43243 * 180.29208 * 28 7 6 49 49 H 1.07997 * 119.50958 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1988 -1.3131 1.0654 6 6 3.7102 -1.9908 2.1646 7 6 4.9406 -2.6388 2.0462 8 6 5.5292 -3.3691 3.1932 9 8 4.8819 -3.5277 4.2093 10 7 6.7827 -3.8574 3.1095 11 6 7.8151 -3.9117 2.0532 12 6 8.8364 -3.9688 3.2131 13 1 9.6729 -4.6470 3.0445 14 6 9.2687 -2.5607 3.6275 15 6 9.4739 -2.5160 5.1439 16 7 8.2085 -2.8873 5.7848 17 6 7.6128 -2.0271 6.6682 18 1 7.6846 -0.9604 6.5151 19 6 6.9168 -2.5263 7.7606 20 7 6.7543 -3.8249 7.9000 21 14 6.2107 -1.3548 9.0328 22 1 4.8298 -0.9732 8.6419 23 1 6.1830 -2.0224 10.3590 24 1 7.0579 -0.1376 9.1090 25 6 7.5831 -4.1689 5.4825 26 6 7.6881 -4.5569 4.0295 27 1 7.6231 -5.6385 3.9104 28 6 5.6009 -2.5852 0.8132 29 6 5.0196 -1.8948 -0.2305 30 7 3.8576 -1.2889 -0.0802 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4424 0.0005 37 1 1.6768 1.9562 -0.8900 38 1 3.1666 -2.0118 3.0976 39 1 7.8799 -3.0035 1.4539 40 1 7.7831 -4.8189 1.4498 41 1 8.4967 -1.8453 3.3440 42 1 10.2026 -2.3051 3.1266 43 1 10.2533 -3.2217 5.4312 44 1 9.7589 -1.5086 5.4476 45 1 6.2676 -4.1737 8.6632 46 1 6.5291 -4.1165 5.7553 47 1 8.0598 -4.9413 6.0861 48 1 6.5526 -3.0780 0.6804 49 1 5.5239 -1.8492 -1.1844 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084769287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:05 Heat of formation + Delta-G solvation = 40.446509 kcal Electronic energy + Delta-G solvation = -31259.347477 eV Core-core repulsion = 27189.566068 eV Total energy + Delta-G solvation = -4069.781409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.99742 -40.27290 -38.44954 -37.39181 -35.21215 -33.46803 -32.67719 -32.09436 -30.32871 -30.20229 -28.87898 -27.47701 -27.06693 -24.77569 -24.08723 -23.40030 -22.78236 -21.67029 -21.02303 -20.02391 -18.65142 -17.74016 -17.19837 -16.43757 -16.12813 -15.86125 -15.72347 -15.62185 -15.21350 -14.56160 -14.36462 -14.28875 -13.93700 -13.81964 -13.56998 -13.31877 -13.21085 -13.04992 -12.72093 -12.52567 -12.52033 -12.41830 -12.11353 -12.05056 -11.77300 -11.46990 -11.14375 -10.99602 -10.94819 -10.78537 -10.62054 -10.47867 -10.22667 -10.04435 -9.92922 -9.83813 -9.78218 -9.52018 -9.01399 -8.57280 -8.31356 -8.16391 -6.47169 -5.68037 -3.19168 0.80156 1.10474 2.78090 3.20689 3.22307 3.46244 3.52011 3.52627 3.92622 4.14843 4.47055 4.56800 4.63800 4.66209 4.77052 4.86971 4.94164 4.99391 5.11047 5.16640 5.31657 5.35765 5.43816 5.48188 5.50703 5.53606 5.54101 5.60484 5.66612 5.70215 5.71160 5.86041 5.89083 5.98181 6.04757 6.12437 6.15103 6.27624 6.37301 6.38717 6.53294 6.59661 6.79716 7.00095 7.19269 7.51676 7.72091 7.84321 7.94823 8.18384 8.61256 8.64352 9.37269 9.96797 10.49903 11.39292 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.003518 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.863968 B = 7956.285770 C = 9581.457074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.082 3.918 3 C -0.169 4.169 4 O -0.299 6.299 5 C 0.320 3.680 6 C -0.136 4.136 7 C -0.034 4.034 8 C 0.574 3.426 9 O -0.503 6.503 10 N -0.620 5.620 11 C 0.084 3.916 12 C -0.108 4.108 13 H 0.089 0.911 14 C -0.118 4.118 15 C 0.147 3.853 16 N -0.586 5.586 17 C -0.258 4.258 18 H 0.059 0.941 19 C 0.018 3.982 20 N -0.900 5.900 21 Si 0.900 3.100 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.163 3.837 26 C 0.126 3.874 27 H 0.074 0.926 28 C -0.199 4.199 29 C 0.132 3.868 30 N -0.533 5.533 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.153 0.847 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.021 0.979 44 H 0.056 0.944 45 H 0.253 0.747 46 H 0.108 0.892 47 H 0.033 0.967 48 H 0.152 0.848 49 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.279 2.602 -20.815 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 C -0.226 4.226 4 O -0.207 6.207 5 C 0.142 3.858 6 C -0.157 4.157 7 C -0.045 4.045 8 C 0.362 3.638 9 O -0.377 6.377 10 N -0.356 5.356 11 C -0.039 4.039 12 C -0.128 4.128 13 H 0.107 0.893 14 C -0.158 4.158 15 C 0.021 3.979 16 N -0.309 5.309 17 C -0.388 4.388 18 H 0.077 0.923 19 C -0.182 4.182 20 N -0.543 5.543 21 Si 0.729 3.271 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.038 3.962 26 C 0.022 3.978 27 H 0.092 0.908 28 C -0.220 4.220 29 C -0.023 4.023 30 N -0.258 5.258 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.171 0.829 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.039 0.961 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.126 0.874 47 H 0.050 0.950 48 H 0.169 0.831 49 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.510 2.969 -20.532 21.040 hybrid contribution -0.075 0.153 0.970 0.984 sum -3.584 3.121 -19.562 20.131 Atomic orbital electron populations 1.21912 0.92948 1.03025 1.02948 1.22331 0.94398 0.92751 0.87991 1.22220 1.02216 0.95662 1.02532 1.86335 1.31494 1.64360 1.38499 1.19585 0.86311 0.90500 0.89441 1.21185 0.96161 0.98876 0.99521 1.20318 0.93703 0.96037 0.94416 1.17540 0.79945 0.79762 0.86578 1.90868 1.59034 1.57485 1.30360 1.49674 1.12065 1.57650 1.16247 1.23827 0.85982 1.01253 0.92837 1.22874 0.96141 0.99000 0.94747 0.89323 1.21879 0.99795 0.94047 1.00073 1.20766 0.89101 0.98469 0.89590 1.43456 1.19446 1.18354 1.49597 1.19016 1.30395 0.88602 1.00759 0.92285 1.25257 1.00153 0.95599 0.97156 1.69950 1.43718 1.10755 1.29902 0.86337 0.79036 0.80338 0.81346 1.21362 1.21553 1.20500 1.20251 1.02241 0.87728 0.86028 1.22806 0.83727 0.95252 0.95970 0.90784 1.22741 1.02680 1.03207 0.93334 1.22306 0.89678 0.91685 0.98661 1.67075 1.10732 1.23379 1.24572 0.91546 0.90571 0.91809 0.89327 0.91906 0.91951 0.91202 0.82896 0.89839 0.89927 0.92182 0.92662 0.96146 0.92537 0.93646 0.87440 0.94962 0.83055 0.82097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.56 37.16 0.36 -0.91 16 2 C 0.08 0.87 3.11 -26.73 -0.08 0.79 16 3 C -0.17 -1.63 9.53 37.16 0.35 -1.28 16 4 O -0.30 -4.23 9.76 -18.76 -0.18 -4.41 16 5 C 0.32 4.78 7.45 -17.16 -0.13 4.65 16 6 C -0.14 -2.27 9.61 -38.84 -0.37 -2.64 16 7 C -0.03 -0.56 5.91 -104.67 -0.62 -1.18 16 8 C 0.57 11.56 7.93 -12.18 -0.10 11.46 16 9 O -0.50 -12.62 15.65 5.35 0.08 -12.53 16 10 N -0.62 -10.95 3.34 -175.02 -0.58 -11.54 16 11 C 0.08 1.02 6.04 -3.01 -0.02 1.00 16 12 C -0.11 -1.56 4.39 -89.97 -0.40 -1.96 16 13 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 14 C -0.12 -1.90 5.66 -26.67 -0.15 -2.05 16 15 C 0.15 3.00 6.47 -3.93 -0.03 2.97 16 16 N -0.59 -14.84 3.02 -175.00 -0.53 -15.37 16 17 C -0.26 -7.36 9.44 -15.06 -0.14 -7.50 16 18 H 0.06 1.68 7.83 -52.48 -0.41 1.27 16 19 C 0.02 0.52 5.30 -17.43 -0.09 0.43 16 20 N -0.90 -27.11 10.66 55.49 0.59 -26.52 16 21 Si 0.90 22.94 29.56 -169.99 -5.02 17.91 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 25 C 0.16 4.02 4.59 -5.55 -0.03 3.99 16 26 C 0.13 2.34 4.22 -69.60 -0.29 2.05 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 28 C -0.20 -2.49 9.22 -39.03 -0.36 -2.85 16 29 C 0.13 1.48 11.17 -17.61 -0.20 1.28 16 30 N -0.53 -7.04 8.61 -13.38 -0.12 -7.15 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.96 6.98 -51.93 -0.36 0.59 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.15 2.72 7.76 -52.49 -0.41 2.32 16 39 H 0.08 0.88 6.01 -51.93 -0.31 0.57 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 1.07 7.69 -51.93 -0.40 0.67 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 1.15 7.90 -51.93 -0.41 0.73 16 45 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.11 3.14 5.04 -51.93 -0.26 2.88 16 47 H 0.03 0.85 7.93 -51.93 -0.41 0.44 16 48 H 0.15 1.53 3.96 -52.49 -0.21 1.32 16 49 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 388.56 15.07 5.86 5.86 Total: -1.00 -34.79 388.56 -9.59 -44.38 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -7.39 Total: 1.12 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -2.29 Total: 8.26 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.64 Total: -60.58 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.10 Total: -16.94 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.79 -9.59 -44.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084769287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.822 kcal (2) G-P(sol) polarization free energy of solvation -34.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds