Wall clock time and date at job start Wed Apr 1 2020 04:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 O 1.42905 * 109.46897 * 119.99998 * 2 1 3 5 5 C 1.35687 * 117.00178 * 150.00120 * 4 2 1 6 6 C 1.38894 * 119.62673 * 180.29901 * 5 4 2 7 7 C 1.39569 * 118.94523 * 180.26882 * 6 5 4 8 8 C 1.48169 * 120.88652 * 179.71331 * 7 6 5 9 9 O 1.21513 * 120.00198 * 7.58490 * 8 7 6 10 10 N 1.34784 * 119.99537 * 187.58691 * 8 7 6 11 11 C 1.47806 * 135.01276 * 356.74763 * 10 8 7 12 12 C 1.54647 * 85.79156 * 153.84522 * 11 10 8 13 13 H 1.08999 * 114.44507 * 140.42260 * 12 11 10 14 14 C 1.53019 * 110.83584 * 270.23655 * 12 11 10 15 15 C 1.53096 * 109.45108 * 143.88815 * 14 12 11 16 16 N 1.46623 * 108.04971 * 300.99617 * 15 14 12 17 17 C 1.36935 * 119.89171 * 237.35801 * 16 15 14 18 18 H 1.08003 * 120.00156 * 34.51970 * 17 16 15 19 19 C 1.38819 * 119.99534 * 214.52448 * 17 16 15 20 20 N 1.31614 * 120.00106 * 355.53820 * 19 17 16 21 21 Si 1.86805 * 119.99496 * 175.53664 * 19 17 16 22 22 H 1.48501 * 109.47005 * 90.00128 * 21 19 17 23 23 H 1.48499 * 109.46804 * 209.99752 * 21 19 17 24 24 H 1.48500 * 109.47195 * 329.99730 * 21 19 17 25 25 C 1.45777 * 120.15102 * 57.29419 * 16 15 14 26 26 C 1.46813 * 135.01024 * 176.80447 * 10 8 7 27 27 H 1.09001 * 111.56431 * 94.44541 * 26 10 8 28 28 C 1.39968 * 118.21935 * 359.43839 * 7 6 5 29 29 C 1.37977 * 119.13116 * 0.27495 * 28 7 6 30 30 N 1.31910 * 120.97679 * 0.02562 * 29 28 7 31 31 H 1.09002 * 109.47169 * 300.00163 * 1 2 3 32 32 H 1.08999 * 109.46784 * 60.00124 * 1 2 3 33 33 H 1.09000 * 109.47093 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47064 * 239.99504 * 2 1 3 35 35 H 1.09002 * 109.47107 * 59.99799 * 3 2 1 36 36 H 1.09007 * 109.47270 * 179.97438 * 3 2 1 37 37 H 1.08999 * 109.47066 * 299.99703 * 3 2 1 38 38 H 1.08000 * 120.52300 * 359.97438 * 6 5 4 39 39 H 1.09002 * 113.82213 * 39.62583 * 11 10 8 40 40 H 1.09001 * 113.93005 * 268.07267 * 11 10 8 41 41 H 1.08996 * 109.47601 * 23.89040 * 14 12 11 42 42 H 1.09005 * 109.47205 * 263.87954 * 14 12 11 43 43 H 1.08995 * 109.75710 * 60.64837 * 15 14 12 44 44 H 1.09003 * 109.75717 * 181.35044 * 15 14 12 45 45 H 0.97008 * 119.99788 * 180.02562 * 20 19 17 46 46 H 1.08996 * 108.70471 * 199.78762 * 25 16 15 47 47 H 1.09001 * 108.69282 * 81.78970 * 25 16 15 48 48 H 1.07995 * 120.43243 * 180.29208 * 28 7 6 49 49 H 1.07997 * 119.50958 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1988 -1.3131 1.0654 6 6 3.7102 -1.9908 2.1646 7 6 4.9406 -2.6388 2.0462 8 6 5.5292 -3.3691 3.1932 9 8 4.8819 -3.5277 4.2093 10 7 6.7827 -3.8574 3.1095 11 6 7.8151 -3.9117 2.0532 12 6 8.8364 -3.9688 3.2131 13 1 9.6729 -4.6470 3.0445 14 6 9.2687 -2.5607 3.6275 15 6 9.4739 -2.5160 5.1439 16 7 8.2085 -2.8873 5.7848 17 6 7.6128 -2.0271 6.6682 18 1 7.6846 -0.9604 6.5151 19 6 6.9168 -2.5263 7.7606 20 7 6.7543 -3.8249 7.9000 21 14 6.2107 -1.3548 9.0328 22 1 4.8298 -0.9732 8.6419 23 1 6.1830 -2.0224 10.3590 24 1 7.0579 -0.1376 9.1090 25 6 7.5831 -4.1689 5.4825 26 6 7.6881 -4.5569 4.0295 27 1 7.6231 -5.6385 3.9104 28 6 5.6009 -2.5852 0.8132 29 6 5.0196 -1.8948 -0.2305 30 7 3.8576 -1.2889 -0.0802 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4424 0.0005 37 1 1.6768 1.9562 -0.8900 38 1 3.1666 -2.0118 3.0976 39 1 7.8799 -3.0035 1.4539 40 1 7.7831 -4.8189 1.4498 41 1 8.4967 -1.8453 3.3440 42 1 10.2026 -2.3051 3.1266 43 1 10.2533 -3.2217 5.4312 44 1 9.7589 -1.5086 5.4476 45 1 6.2676 -4.1737 8.6632 46 1 6.5291 -4.1165 5.7553 47 1 8.0598 -4.9413 6.0861 48 1 6.5526 -3.0780 0.6804 49 1 5.5239 -1.8492 -1.1844 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084769287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:04 Heat of formation + Delta-G solvation = 15.298553 kcal Electronic energy + Delta-G solvation = -31260.437974 eV Core-core repulsion = 27189.566068 eV Total energy + Delta-G solvation = -4070.871906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.21226 -41.47828 -39.61971 -38.78138 -37.03798 -34.34476 -34.09870 -33.68728 -31.97134 -31.42454 -30.35411 -28.70732 -28.19319 -26.04181 -25.76777 -24.65868 -24.09965 -22.81957 -22.46934 -21.22561 -19.90682 -19.38107 -18.49046 -17.86901 -17.47425 -17.23174 -16.92898 -16.76208 -16.72278 -16.14371 -15.64327 -15.48104 -15.31595 -15.18792 -14.89779 -14.72831 -14.44131 -14.41604 -14.07648 -14.01685 -13.56291 -13.31329 -13.21833 -13.14689 -13.06565 -12.88970 -12.78365 -12.64106 -12.34297 -12.26286 -11.98580 -11.95771 -11.81974 -11.78061 -11.44622 -11.29987 -11.05044 -10.86439 -10.61800 -10.38621 -9.60995 -9.56696 -8.54572 -7.87618 -5.41127 -0.38729 0.06362 1.35087 1.38666 1.45996 1.64180 1.89079 2.06406 2.45314 2.76015 3.17327 3.27579 3.32591 3.44200 3.74513 3.84460 3.86670 3.90665 3.96997 4.00155 4.01228 4.24652 4.25558 4.43408 4.48513 4.53116 4.58960 4.66672 4.67000 4.72159 4.76626 4.80512 4.82403 4.83167 4.87233 4.96066 5.03591 5.09995 5.15717 5.18330 5.23590 5.32663 5.36377 5.46229 5.58088 5.72949 5.86958 6.20783 6.43503 6.69073 6.80487 7.15686 7.20095 7.94741 8.36849 9.15306 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.003518 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.863968 B = 7956.285770 C = 9581.457074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.073 3.927 3 C -0.164 4.164 4 O -0.320 6.320 5 C 0.318 3.682 6 C -0.170 4.170 7 C -0.049 4.049 8 C 0.560 3.440 9 O -0.579 6.579 10 N -0.624 5.624 11 C 0.097 3.903 12 C -0.096 4.096 13 H 0.134 0.866 14 C -0.108 4.108 15 C 0.138 3.862 16 N -0.605 5.605 17 C -0.264 4.264 18 H 0.054 0.946 19 C -0.041 4.041 20 N -0.928 5.928 21 Si 0.957 3.043 22 H -0.298 1.298 23 H -0.286 1.286 24 H -0.262 1.262 25 C 0.177 3.823 26 C 0.109 3.891 27 H 0.093 0.907 28 C -0.182 4.182 29 C 0.149 3.851 30 N -0.529 5.529 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.097 0.903 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.130 0.870 41 H 0.039 0.961 42 H 0.104 0.896 43 H 0.030 0.970 44 H 0.049 0.951 45 H 0.245 0.755 46 H 0.051 0.949 47 H -0.003 1.003 48 H 0.185 0.815 49 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 3.370 -26.041 26.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 C -0.222 4.222 4 O -0.228 6.228 5 C 0.140 3.860 6 C -0.192 4.192 7 C -0.060 4.060 8 C 0.350 3.650 9 O -0.459 6.459 10 N -0.358 5.358 11 C -0.023 4.023 12 C -0.115 4.115 13 H 0.151 0.849 14 C -0.147 4.147 15 C 0.013 3.987 16 N -0.329 5.329 17 C -0.395 4.395 18 H 0.072 0.928 19 C -0.237 4.237 20 N -0.573 5.573 21 Si 0.785 3.215 22 H -0.226 1.226 23 H -0.212 1.212 24 H -0.186 1.186 25 C 0.051 3.949 26 C 0.005 3.995 27 H 0.111 0.889 28 C -0.202 4.202 29 C -0.007 4.007 30 N -0.253 5.253 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.148 0.852 41 H 0.058 0.942 42 H 0.122 0.878 43 H 0.048 0.952 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.015 0.985 48 H 0.202 0.798 49 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.011 3.758 -25.819 26.111 hybrid contribution -0.770 -0.066 2.531 2.646 sum -1.782 3.693 -23.289 23.647 Atomic orbital electron populations 1.21943 0.91295 1.03143 1.04093 1.22667 0.95723 0.92980 0.86875 1.22201 1.01219 0.95161 1.03573 1.86322 1.31386 1.64560 1.40562 1.19477 0.86739 0.90391 0.89355 1.21035 0.97247 1.01630 0.99336 1.20130 0.94095 0.96804 0.94979 1.18239 0.80450 0.79596 0.86715 1.90825 1.61237 1.60450 1.33429 1.49873 1.11655 1.56189 1.18055 1.24208 0.81529 1.04906 0.91655 1.22879 0.96466 0.98228 0.93913 0.84860 1.21767 1.01592 0.94904 0.96413 1.21011 0.86935 0.98129 0.92619 1.43698 1.21390 1.17889 1.49879 1.19284 1.29965 0.89002 1.01214 0.92840 1.25990 1.01438 0.97008 0.99304 1.70163 1.44908 1.12250 1.30003 0.85436 0.77775 0.79162 0.79116 1.22554 1.21167 1.18636 1.19794 0.98436 0.86674 0.90040 1.22781 0.87153 0.96756 0.92765 0.88881 1.23047 1.03244 1.02581 0.91329 1.23243 0.88422 0.88940 1.00066 1.67244 1.11501 1.23407 1.23156 0.92054 0.87703 0.92235 0.89023 0.92583 0.93386 0.88418 0.86399 0.86935 0.85190 0.94181 0.87787 0.95220 0.93242 0.94543 0.93018 0.98505 0.79779 0.76619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.56 71.98 0.69 -1.63 16 2 C 0.07 1.50 3.11 30.59 0.10 1.59 16 3 C -0.16 -2.96 9.53 71.98 0.69 -2.27 16 4 O -0.32 -9.36 9.76 -90.06 -0.88 -10.24 16 5 C 0.32 9.62 7.45 84.80 0.63 10.25 16 6 C -0.17 -6.11 9.61 22.75 0.22 -5.89 16 7 C -0.05 -1.64 5.91 -19.90 -0.12 -1.76 16 8 C 0.56 23.56 7.93 86.88 0.69 24.25 16 9 O -0.58 -32.09 15.65 -3.76 -0.06 -32.15 16 10 N -0.62 -21.30 3.34 -825.92 -2.76 -24.06 16 11 C 0.10 1.80 6.04 86.34 0.52 2.32 16 12 C -0.10 -2.32 4.39 -10.31 -0.05 -2.36 16 13 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 14 C -0.11 -3.05 5.66 30.63 0.17 -2.87 16 15 C 0.14 5.49 6.47 86.39 0.56 6.05 16 16 N -0.60 -31.79 3.02 -707.57 -2.14 -33.93 16 17 C -0.26 -15.83 9.44 84.04 0.79 -15.04 16 18 H 0.05 3.19 7.83 -2.91 -0.02 3.16 16 19 C -0.04 -2.55 5.30 84.86 0.45 -2.10 16 20 N -0.93 -60.02 10.66 21.65 0.23 -59.79 16 21 Si 0.96 49.77 29.56 68.60 2.03 51.79 16 22 H -0.30 -15.90 7.11 99.48 0.71 -15.19 16 23 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 24 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 25 C 0.18 9.19 4.59 85.79 0.39 9.58 16 26 C 0.11 3.99 4.22 43.74 0.18 4.18 16 27 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 28 C -0.18 -3.84 9.22 22.63 0.21 -3.63 16 29 C 0.15 2.62 11.17 84.62 0.94 3.56 16 30 N -0.53 -12.64 8.61 -309.14 -2.66 -15.30 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 1.81 6.98 -2.39 -0.02 1.79 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.12 4.90 7.76 -2.91 -0.02 4.88 16 39 H 0.11 1.53 6.01 -2.39 -0.01 1.51 16 40 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.04 1.30 7.69 -2.39 -0.02 1.29 16 42 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.05 1.99 7.90 -2.39 -0.02 1.97 16 45 H 0.25 15.51 8.31 -92.70 -0.77 14.74 16 46 H 0.05 3.28 5.04 -2.39 -0.01 3.27 16 47 H 0.00 -0.16 7.93 -2.39 -0.02 -0.18 16 48 H 0.19 2.51 3.96 -2.91 -0.01 2.50 16 49 H 0.22 1.48 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -90.07 388.56 1.79 -88.28 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.96 Total: 11.18 kcal Atomic # 6 Polarization: 17.14 SS G_CDS: 7.08 Total: 24.22 kcal Atomic # 7 Polarization: -125.76 SS G_CDS: -7.33 Total: -133.09 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.94 Total: -42.39 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.03 Total: 51.79 kcal Total: -90.07 1.79 -88.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084769287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.579 kcal (2) G-P(sol) polarization free energy of solvation -90.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds