Wall clock time and date at job start Wed Apr 1 2020 04:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46830 * 2 1 4 4 O 1.42894 * 109.47240 * 120.00317 * 2 1 3 5 5 C 1.35721 * 117.00297 * 85.72981 * 4 2 1 6 6 C 1.39230 * 120.37818 * 355.46907 * 5 4 2 7 7 C 1.38325 * 118.44556 * 179.97438 * 6 5 4 8 8 C 1.39468 * 119.13069 * 0.02562 * 7 6 5 9 9 C 1.47924 * 119.65675 * 179.97438 * 8 7 6 10 10 O 1.21542 * 120.00213 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00078 * 179.97438 * 9 8 7 12 12 C 1.47288 * 136.54375 * 359.62944 * 11 9 8 13 13 C 1.54348 * 87.50583 * 151.47322 * 12 11 9 14 14 H 1.09001 * 115.79356 * 141.80619 * 13 12 11 15 15 C 1.53066 * 111.57923 * 274.17129 * 13 12 11 16 16 C 1.53141 * 109.21506 * 142.37316 * 15 13 12 17 17 N 1.46530 * 108.25664 * 301.59701 * 16 15 13 18 18 C 1.36942 * 119.73982 * 236.39965 * 17 16 15 19 19 H 1.07991 * 120.00365 * 151.39076 * 18 17 16 20 20 C 1.38813 * 119.99872 * 331.38660 * 18 17 16 21 21 N 1.31614 * 120.00355 * 154.96500 * 20 18 17 22 22 Si 1.86810 * 119.99832 * 334.96812 * 20 18 17 23 23 H 1.48502 * 109.47027 * 92.53262 * 22 20 18 24 24 H 1.48503 * 109.47099 * 212.53346 * 22 20 18 25 25 H 1.48491 * 109.47038 * 332.53241 * 22 20 18 26 26 C 1.45696 * 120.52650 * 56.41829 * 17 16 15 27 27 C 1.46466 * 136.54615 * 180.02562 * 11 9 8 28 28 H 1.08996 * 111.44431 * 97.06310 * 27 11 9 29 29 N 1.32799 * 120.68328 * 0.27289 * 8 7 6 30 30 C 1.31378 * 121.69831 * 359.42978 * 29 8 7 31 31 H 1.09009 * 109.46620 * 299.99891 * 1 2 3 32 32 H 1.08998 * 109.47199 * 59.99440 * 1 2 3 33 33 H 1.08998 * 109.47142 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46635 * 240.00360 * 2 1 3 35 35 H 1.09005 * 109.46631 * 180.02562 * 3 2 1 36 36 H 1.08991 * 109.47480 * 299.99899 * 3 2 1 37 37 H 1.09004 * 109.47195 * 60.01018 * 3 2 1 38 38 H 1.07999 * 120.77975 * 359.95467 * 6 5 4 39 39 H 1.08000 * 120.43457 * 180.02562 * 7 6 5 40 40 H 1.09000 * 113.53118 * 266.10169 * 12 11 9 41 41 H 1.09000 * 113.52826 * 36.73340 * 12 11 9 42 42 H 1.09001 * 109.50750 * 22.45674 * 15 13 12 43 43 H 1.08998 * 109.55772 * 262.32797 * 15 13 12 44 44 H 1.09000 * 109.70725 * 181.90032 * 16 15 13 45 45 H 1.09008 * 109.73980 * 61.31255 * 16 15 13 46 46 H 0.97001 * 120.00558 * 179.97438 * 21 20 18 47 47 H 1.08999 * 108.79571 * 199.11076 * 26 17 16 48 48 H 1.09004 * 108.79130 * 80.88999 * 26 17 16 49 49 H 1.07995 * 119.60216 * 180.26946 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1269 -2.0235 1.0928 6 6 1.7064 -2.7067 -0.0452 7 6 1.8484 -4.0822 -0.0779 8 6 2.4039 -4.7339 1.0230 9 6 2.5606 -6.2046 1.0006 10 8 2.2066 -6.8388 0.0261 11 7 3.0970 -6.8413 2.0605 12 6 3.6372 -6.4591 3.3763 13 6 3.2016 -7.8500 3.8841 14 1 3.8823 -8.3338 4.5846 15 6 1.7407 -7.8504 4.3408 16 6 1.0891 -9.1785 3.9447 17 7 1.1977 -9.3275 2.4911 18 6 0.0674 -9.5153 1.7411 19 1 0.0375 -9.1779 0.7156 20 6 -1.0399 -10.1393 2.2990 21 7 -2.2414 -9.9026 1.8166 22 14 -0.8249 -11.3151 3.7346 23 1 -0.9784 -10.5715 5.0108 24 1 -1.8532 -12.3837 3.6575 25 1 0.5278 -11.9248 3.6766 26 6 2.4988 -9.2780 1.8372 27 6 3.4123 -8.2253 2.4215 28 1 4.4593 -8.4589 2.2283 29 7 2.7880 -4.0483 2.0935 30 6 2.6721 -2.7410 2.1542 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.6767 1.9563 0.8901 38 1 1.2791 -2.1752 -0.8826 39 1 1.5334 -4.6443 -0.9447 40 1 4.7176 -6.3142 3.3778 41 1 3.0993 -5.6349 3.8448 42 1 1.2096 -7.0274 3.8626 43 1 1.6968 -7.7319 5.4235 44 1 0.0389 -9.1741 4.2364 45 1 1.6040 -10.0029 4.4383 46 1 -3.0152 -10.3389 2.2061 47 1 2.3518 -9.0663 0.7781 48 1 2.9782 -10.2520 1.9350 49 1 2.9995 -2.2170 3.0399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084873425.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:08 Heat of formation + Delta-G solvation = 16.484715 kcal Electronic energy + Delta-G solvation = -31048.908716 eV Core-core repulsion = 26978.088245 eV Total energy + Delta-G solvation = -4070.820471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.24105 -41.62970 -39.91243 -38.79550 -37.29902 -34.38056 -33.97437 -33.47218 -32.69168 -31.86984 -30.26636 -28.75565 -28.21206 -25.88861 -25.38446 -25.11722 -24.28400 -22.75376 -22.49455 -21.53582 -19.77175 -19.34252 -18.91004 -18.06512 -18.01155 -17.23640 -17.08141 -16.82952 -16.55446 -16.03120 -15.71447 -15.54231 -15.45608 -15.30547 -15.01086 -14.86682 -14.39061 -14.32360 -14.24913 -14.03599 -13.85469 -13.53438 -13.42674 -13.37546 -13.15046 -12.89693 -12.82333 -12.62029 -12.58172 -12.27385 -12.11754 -12.01523 -11.77958 -11.61421 -11.41415 -11.38111 -10.99050 -10.94011 -10.67508 -10.53640 -9.73180 -9.42605 -8.88014 -8.18562 -5.47514 -0.39319 0.05734 1.29473 1.40920 1.52779 1.72986 1.83156 1.97692 2.41971 2.75801 3.00297 3.06543 3.33418 3.42657 3.44038 3.58002 3.73109 3.81744 3.89684 3.93376 3.96462 4.09651 4.11717 4.29321 4.37410 4.47736 4.58028 4.60198 4.62883 4.66716 4.70839 4.75059 4.78735 4.84798 4.86773 4.88065 4.90116 4.93406 5.02439 5.08315 5.16170 5.20228 5.25258 5.26652 5.33027 5.57032 5.90127 6.11042 6.12366 6.61008 6.83027 6.97052 7.18445 7.67248 8.00032 9.02634 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.002893 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.305902 B = 9674.777171 C =10420.728864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.063 3.937 3 C -0.145 4.145 4 O -0.301 6.301 5 C 0.114 3.886 6 C -0.171 4.171 7 C -0.080 4.080 8 C 0.021 3.979 9 C 0.586 3.414 10 O -0.583 6.583 11 N -0.623 5.623 12 C 0.122 3.878 13 C -0.103 4.103 14 H 0.146 0.854 15 C -0.108 4.108 16 C 0.122 3.878 17 N -0.608 5.608 18 C -0.249 4.249 19 H 0.022 0.978 20 C -0.037 4.037 21 N -0.959 5.959 22 Si 0.956 3.044 23 H -0.265 1.265 24 H -0.309 1.309 25 H -0.258 1.258 26 C 0.141 3.859 27 C 0.115 3.885 28 H 0.121 0.879 29 N -0.417 5.417 30 C 0.071 3.929 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.172 0.828 39 H 0.137 0.863 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.032 0.968 43 H 0.098 0.902 44 H 0.045 0.955 45 H 0.049 0.951 46 H 0.262 0.738 47 H 0.034 0.966 48 H 0.039 0.961 49 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.624 23.234 3.863 28.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.008 3.992 3 C -0.202 4.202 4 O -0.213 6.213 5 C 0.064 3.936 6 C -0.196 4.196 7 C -0.101 4.101 8 C -0.115 4.115 9 C 0.376 3.624 10 O -0.463 6.463 11 N -0.355 5.355 12 C 0.001 3.999 13 C -0.122 4.122 14 H 0.164 0.836 15 C -0.147 4.147 16 C -0.002 4.002 17 N -0.333 5.333 18 C -0.379 4.379 19 H 0.039 0.961 20 C -0.232 4.232 21 N -0.605 5.605 22 Si 0.783 3.217 23 H -0.191 1.191 24 H -0.238 1.238 25 H -0.182 1.182 26 C 0.015 3.985 27 C 0.012 3.988 28 H 0.138 0.862 29 N -0.129 5.129 30 C -0.093 4.093 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.189 0.811 39 H 0.155 0.845 40 H 0.134 0.866 41 H 0.107 0.893 42 H 0.050 0.950 43 H 0.116 0.884 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.053 0.947 48 H 0.057 0.943 49 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 15.613 22.637 3.997 27.788 hybrid contribution -1.388 -0.530 -1.272 1.956 sum 14.225 22.107 2.725 26.429 Atomic orbital electron populations 1.22413 0.94317 1.02746 1.04461 1.22895 0.95002 0.94820 0.86523 1.21886 1.02217 0.91774 1.04296 1.86129 1.80080 1.14632 1.40469 1.20448 0.93705 0.84600 0.94812 1.21899 1.04128 0.93624 0.99994 1.21967 0.94623 0.94992 0.98533 1.20778 1.04509 0.93139 0.93047 1.17643 0.77533 0.86155 0.81051 1.90771 1.52828 1.67829 1.34879 1.49343 1.58496 1.10597 1.17087 1.23502 1.00380 0.97269 0.78748 1.22913 0.97432 0.97235 0.94628 0.83649 1.21710 0.94714 0.96953 1.01315 1.21312 0.98877 0.96746 0.83258 1.43847 1.02205 1.84340 1.02859 1.18671 0.91436 1.31661 0.96121 0.96055 1.25995 0.94322 1.00773 1.02068 1.70071 0.98561 1.45052 1.46778 0.85734 0.77446 0.79085 0.79475 1.19102 1.23785 1.18246 1.20362 0.85637 0.96336 0.96146 1.22670 0.99356 0.82201 0.94597 0.86163 1.67644 1.13530 1.08238 1.23464 1.22768 0.99388 0.88151 0.98949 0.91355 0.88636 0.93218 0.89773 0.91477 0.88317 0.91302 0.81099 0.84528 0.86617 0.89273 0.94959 0.88372 0.93680 0.93357 0.92937 0.94713 0.94342 0.78449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 9.22 71.98 0.66 -1.42 16 2 C 0.06 0.73 2.84 30.60 0.09 0.82 16 3 C -0.14 -1.08 9.56 71.98 0.69 -0.39 16 4 O -0.30 -5.13 9.80 -90.43 -0.89 -6.01 16 5 C 0.11 2.36 6.64 22.75 0.15 2.51 16 6 C -0.17 -3.79 8.37 22.53 0.19 -3.60 16 7 C -0.08 -2.44 9.62 22.59 0.22 -2.22 16 8 C 0.02 0.73 6.74 41.86 0.28 1.01 16 9 C 0.59 24.50 7.99 86.81 0.69 25.20 16 10 O -0.58 -29.79 15.56 -3.85 -0.06 -29.85 16 11 N -0.62 -21.94 3.33 -868.96 -2.89 -24.83 16 12 C 0.12 2.95 6.90 81.18 0.56 3.51 16 13 C -0.10 -2.65 4.57 -10.49 -0.05 -2.70 16 14 H 0.15 2.44 8.14 -2.39 -0.02 2.42 16 15 C -0.11 -3.61 5.71 30.66 0.17 -3.43 16 16 C 0.12 5.30 4.22 86.42 0.36 5.66 16 17 N -0.61 -31.39 2.75 -707.23 -1.94 -33.33 16 18 C -0.25 -15.87 9.90 84.03 0.83 -15.04 16 19 H 0.02 1.59 8.01 -2.92 -0.02 1.57 16 20 C -0.04 -2.35 5.09 84.86 0.43 -1.92 16 21 N -0.96 -64.76 13.97 21.65 0.30 -64.45 16 22 Si 0.96 48.54 24.57 68.60 1.69 50.23 16 23 H -0.27 -12.37 6.62 99.48 0.66 -11.71 16 24 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 25 H -0.26 -12.43 7.07 99.48 0.70 -11.72 16 26 C 0.14 6.26 6.15 85.92 0.53 6.79 16 27 C 0.12 3.77 4.03 38.70 0.16 3.92 16 28 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 29 N -0.42 -11.71 8.02 -184.53 -1.48 -13.19 16 30 C 0.07 1.54 11.14 85.00 0.95 2.49 16 31 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.74 7.09 -2.39 -0.02 0.72 16 34 H 0.08 0.86 6.24 -2.39 -0.01 0.84 16 35 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.17 2.75 5.64 -2.91 -0.02 2.73 16 39 H 0.14 4.43 7.63 -2.91 -0.02 4.41 16 40 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.09 2.19 7.03 -2.39 -0.02 2.18 16 42 H 0.03 1.30 7.69 -2.39 -0.02 1.28 16 43 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.04 2.20 4.63 -2.39 -0.01 2.19 16 45 H 0.05 1.88 7.51 -2.38 -0.02 1.86 16 46 H 0.26 16.57 8.31 -92.71 -0.77 15.80 16 47 H 0.03 1.82 6.46 -2.39 -0.02 1.81 16 48 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 49 H 0.20 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -88.82 383.21 2.55 -86.27 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.91 Total: 14.00 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 6.92 Total: 21.18 kcal Atomic # 7 Polarization: -129.80 SS G_CDS: -6.01 Total: -135.81 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.95 Total: -35.87 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 1.69 Total: 50.23 kcal Total: -88.82 2.55 -86.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084873425.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.752 kcal (2) G-P(sol) polarization free energy of solvation -88.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds