Wall clock time and date at job start Wed Apr 1 2020 04:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50709 * 109.46943 * 2 1 4 4 O 1.21278 * 120.00124 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99645 * 180.02562 * 3 2 1 6 6 C 1.39959 * 119.99559 * 184.97090 * 5 3 2 7 7 C 1.38989 * 119.99549 * 212.41910 * 6 5 3 8 8 C 1.38213 * 120.22086 * 180.02562 * 7 6 5 9 9 C 1.38023 * 120.22082 * 359.74571 * 8 7 6 10 10 C 1.39578 * 119.99611 * 0.50907 * 9 8 7 11 11 C 1.47860 * 120.10802 * 179.77196 * 10 9 8 12 12 O 1.21556 * 119.99740 * 209.55705 * 11 10 9 13 13 N 1.34774 * 120.00513 * 29.55248 * 11 10 9 14 14 C 1.46501 * 119.99760 * 357.18012 * 13 11 10 15 15 C 1.46494 * 120.00019 * 177.17821 * 13 11 10 16 16 C 1.53006 * 109.47116 * 98.00408 * 15 13 11 17 17 H 1.09001 * 112.96406 * 53.70313 * 16 15 13 18 18 C 1.53949 * 113.76925 * 185.38511 * 16 15 13 19 19 C 1.53947 * 86.28724 * 137.90581 * 18 16 15 20 20 N 1.47579 * 86.12011 * 336.38887 * 19 18 16 21 21 C 1.36936 * 134.49840 * 204.63310 * 20 19 18 22 22 H 1.07997 * 120.00366 * 196.74846 * 21 20 19 23 23 C 1.38815 * 119.99625 * 16.75583 * 21 20 19 24 24 N 1.31624 * 119.99871 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00050 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46749 * 59.99560 * 25 23 21 27 27 H 1.48500 * 109.46931 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47132 * 299.99765 * 25 23 21 29 29 C 1.38593 * 119.99954 * 32.44090 * 6 5 3 30 30 H 1.09003 * 109.46961 * 299.99622 * 1 2 3 31 31 H 1.09001 * 109.47195 * 59.99576 * 1 2 3 32 32 H 1.09000 * 109.47281 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46961 * 240.00378 * 2 1 3 34 34 H 1.08993 * 109.47645 * 119.99958 * 2 1 3 35 35 H 0.96998 * 120.00122 * 4.96772 * 5 3 2 36 36 H 1.07999 * 119.89293 * 0.04209 * 7 6 5 37 37 H 1.07997 * 119.88881 * 179.97438 * 8 7 6 38 38 H 1.07999 * 119.99763 * 180.25620 * 9 8 7 39 39 H 1.08996 * 109.47340 * 264.65146 * 14 13 11 40 40 H 1.08997 * 109.47111 * 24.65905 * 14 13 11 41 41 H 1.09003 * 109.46686 * 144.65313 * 14 13 11 42 42 H 1.08996 * 109.47759 * 338.00067 * 15 13 11 43 43 H 1.09001 * 109.46972 * 217.99569 * 15 13 11 44 44 H 1.08992 * 113.73982 * 252.24856 * 18 16 15 45 45 H 1.08996 * 113.74215 * 23.45429 * 18 16 15 46 46 H 1.08996 * 113.77303 * 90.69756 * 19 18 16 47 47 H 1.09005 * 113.76796 * 221.98241 * 19 18 16 48 48 H 0.97000 * 119.99552 * 180.02562 * 24 23 21 49 49 H 1.08001 * 120.11448 * 0.02562 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8247 2.9822 0.1045 7 6 5.0039 3.3534 -0.5307 8 6 5.4700 4.6507 -0.4297 9 6 4.7648 5.5875 0.2984 10 6 3.5823 5.2234 0.9444 11 6 2.8275 6.2237 1.7292 12 8 2.1626 5.8714 2.6839 13 7 2.8767 7.5261 1.3862 14 6 3.7265 7.9591 0.2741 15 6 2.0804 8.5088 2.1252 16 6 2.9605 9.1951 3.1719 17 1 3.8680 9.6254 2.7483 18 6 2.1908 10.1562 4.0960 19 6 3.0305 9.5659 5.2433 20 7 3.1933 8.3800 4.3800 21 6 3.4554 7.0555 4.6082 22 1 3.7931 6.4247 3.7993 23 6 3.2867 6.5235 5.8792 24 7 2.8753 7.2925 6.8651 25 14 3.6434 4.7165 6.1904 26 1 5.0641 4.4297 5.8670 27 1 3.3877 4.4003 7.6186 28 1 2.7626 3.8833 5.3331 29 6 3.1119 3.9141 0.8423 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9871 0.9330 -0.0736 36 1 5.5578 2.6258 -1.1054 37 1 6.3871 4.9331 -0.9251 38 1 5.1301 6.6012 0.3715 39 1 4.6870 8.2987 0.6617 40 1 3.8848 7.1243 -0.4086 41 1 3.2399 8.7765 -0.2581 42 1 1.2510 8.0051 2.6217 43 1 1.6903 9.2550 1.4330 44 1 2.3934 11.2091 3.9007 45 1 1.1261 9.9349 4.1704 46 1 3.9596 10.1044 5.4299 47 1 2.4599 9.3747 6.1522 48 1 2.7578 6.9208 7.7534 49 1 2.1958 3.6274 1.3372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085630422.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:09 Heat of formation + Delta-G solvation = 48.693712 kcal Electronic energy + Delta-G solvation = -31323.760191 eV Core-core repulsion = 27254.336408 eV Total energy + Delta-G solvation = -4069.423784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.77292 -39.71183 -38.20416 -37.26464 -35.19398 -34.64893 -33.10124 -31.91345 -31.12433 -29.97438 -28.07867 -27.58650 -26.36910 -25.00324 -23.74197 -23.09870 -22.30692 -21.86492 -20.36589 -19.45341 -18.87671 -17.60571 -17.37547 -16.71969 -16.48145 -15.94409 -15.67582 -15.56519 -15.08355 -14.62123 -14.52980 -14.27607 -13.90188 -13.63714 -13.47578 -13.30285 -13.28774 -12.85050 -12.58728 -12.54817 -12.49156 -12.23013 -12.01622 -11.57025 -11.43744 -11.43509 -11.30566 -11.05559 -10.88534 -10.67853 -10.49444 -10.39681 -10.38768 -9.93773 -9.78758 -9.52115 -9.30722 -9.07633 -8.79168 -8.38274 -8.15341 -7.93711 -6.50701 -5.47456 -2.80670 1.02547 1.35430 2.42819 2.83262 3.32644 3.53848 3.57084 3.61027 3.70546 4.04578 4.39484 4.68894 4.74143 4.79986 4.80481 4.88106 5.07472 5.12044 5.21456 5.34348 5.43579 5.48323 5.50774 5.53353 5.60282 5.67848 5.69684 5.80014 5.84080 5.88211 5.99161 6.01152 6.09583 6.11996 6.19989 6.30345 6.36740 6.48252 6.52682 6.53882 6.82757 6.87854 6.96036 7.15126 7.18336 7.43589 7.69933 7.86833 7.94603 7.99731 8.32285 8.91574 9.34308 10.02238 10.88373 11.67908 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010753 B = 0.003850 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.205598 B = 7271.156899 C = 8384.157707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.141 4.141 3 C 0.506 3.494 4 O -0.511 6.511 5 N -0.676 5.676 6 C 0.134 3.866 7 C -0.134 4.134 8 C -0.110 4.110 9 C -0.122 4.122 10 C -0.095 4.095 11 C 0.538 3.462 12 O -0.474 6.474 13 N -0.607 5.607 14 C 0.064 3.936 15 C 0.120 3.880 16 C 0.123 3.877 17 H 0.041 0.959 18 C -0.154 4.154 19 C 0.139 3.861 20 N -0.593 5.593 21 C -0.182 4.182 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.925 5.925 25 Si 0.900 3.100 26 H -0.292 1.292 27 H -0.294 1.294 28 H -0.280 1.280 29 C -0.069 4.069 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.410 0.590 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.147 0.853 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.074 0.926 46 H 0.017 0.983 47 H 0.085 0.915 48 H 0.248 0.752 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.190 -8.572 -20.035 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.181 4.181 3 C 0.294 3.706 4 O -0.385 6.385 5 N -0.321 5.321 6 C 0.040 3.960 7 C -0.154 4.154 8 C -0.129 4.129 9 C -0.140 4.140 10 C -0.099 4.099 11 C 0.325 3.675 12 O -0.346 6.346 13 N -0.341 5.341 14 C -0.079 4.079 15 C -0.004 4.004 16 C 0.015 3.985 17 H 0.058 0.942 18 C -0.193 4.193 19 C 0.014 3.986 20 N -0.319 5.319 21 C -0.310 4.310 22 H 0.096 0.904 23 C -0.202 4.202 24 N -0.574 5.574 25 Si 0.731 3.269 26 H -0.219 1.219 27 H -0.221 1.221 28 H -0.206 1.206 29 C -0.090 4.090 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.246 0.754 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.164 0.836 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.034 0.966 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.189 -8.468 -19.274 21.165 hybrid contribution 0.932 -1.337 0.154 1.637 sum 3.121 -9.805 -19.119 21.712 Atomic orbital electron populations 1.21556 0.92621 1.01791 1.03766 1.21637 0.99068 0.92878 1.04530 1.21054 0.81593 0.92477 0.75521 1.90777 1.54915 1.46284 1.46521 1.43558 1.07958 1.07019 1.73586 1.17581 0.95409 0.84882 0.98108 1.20937 0.96720 0.97220 1.00563 1.20863 0.99704 0.92387 0.99936 1.22021 0.94455 1.00896 0.96671 1.20014 0.96401 0.94421 0.99100 1.18063 0.83028 0.82045 0.84392 1.90971 1.39717 1.79102 1.24842 1.47454 1.46386 1.06818 1.33480 1.22378 0.94819 1.00961 0.89743 1.21883 0.95014 0.90152 0.93328 1.22690 0.94731 0.91252 0.89843 0.94179 1.23731 1.00053 0.96215 0.99320 1.22438 0.94830 0.85502 0.95791 1.45866 1.83114 1.02688 1.00236 1.18996 1.34929 0.82294 0.94752 0.90419 1.24748 1.01944 0.97035 0.96482 1.69789 1.53199 1.33871 1.00529 0.86348 0.77662 0.86466 0.76390 1.21879 1.22051 1.20615 1.21207 1.00718 0.91425 0.95659 0.91591 0.91865 0.91879 0.88756 0.88480 0.75433 0.85720 0.85240 0.83596 0.92683 0.89638 0.91927 0.89017 0.91898 0.93474 0.90719 0.96567 0.89647 0.94229 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.20 37.16 0.34 -0.88 16 2 C -0.14 -1.08 6.42 -27.88 -0.18 -1.26 16 3 C 0.51 6.15 7.58 -10.98 -0.08 6.06 16 4 O -0.51 -8.67 13.59 5.56 0.08 -8.59 16 5 N -0.68 -7.21 5.34 -9.89 -0.05 -7.27 16 6 C 0.13 1.85 6.29 -83.74 -0.53 1.32 16 7 C -0.13 -1.48 9.95 -39.31 -0.39 -1.87 16 8 C -0.11 -1.24 10.02 -39.67 -0.40 -1.64 16 9 C -0.12 -1.70 7.45 -39.16 -0.29 -1.99 16 10 C -0.10 -1.72 5.51 -104.99 -0.58 -2.30 16 11 C 0.54 11.51 5.82 -12.32 -0.07 11.44 16 12 O -0.47 -12.55 13.10 5.32 0.07 -12.48 16 13 N -0.61 -11.13 2.88 -182.69 -0.53 -11.65 16 14 C 0.06 0.83 8.80 59.85 0.53 1.35 16 15 C 0.12 2.29 5.39 -4.04 -0.02 2.27 16 16 C 0.12 2.59 4.52 -66.86 -0.30 2.29 16 17 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 18 C -0.15 -3.08 7.86 -25.80 -0.20 -3.28 16 19 C 0.14 3.47 7.96 -2.98 -0.02 3.44 16 20 N -0.59 -15.93 3.54 -170.72 -0.60 -16.54 16 21 C -0.18 -5.45 8.40 -15.06 -0.13 -5.57 16 22 H 0.08 2.35 4.95 -52.49 -0.26 2.09 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 24 N -0.93 -29.47 11.28 55.49 0.63 -28.84 16 25 Si 0.90 25.02 29.55 -169.99 -5.02 19.99 16 26 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 27 H -0.29 -8.08 7.11 56.52 0.40 -7.68 16 28 H -0.28 -7.95 7.11 56.52 0.40 -7.54 16 29 C -0.07 -1.25 8.21 -38.98 -0.32 -1.57 16 30 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.41 2.64 8.81 -40.82 -0.36 2.28 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.15 1.82 4.62 -52.49 -0.24 1.58 16 39 H 0.05 0.68 7.44 -51.93 -0.39 0.29 16 40 H 0.09 1.00 4.65 -51.93 -0.24 0.76 16 41 H 0.06 0.67 8.04 -51.93 -0.42 0.25 16 42 H 0.09 2.08 7.23 -51.93 -0.38 1.71 16 43 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 2.38 6.60 -51.93 -0.34 2.04 16 48 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 49 H 0.14 3.01 6.20 -52.49 -0.33 2.69 16 LS Contribution 389.65 15.07 5.87 5.87 Total: -1.00 -40.07 389.65 -9.46 -49.53 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.15 Total: 2.47 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -2.74 Total: 7.51 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: -0.56 Total: -64.30 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: 0.15 Total: -21.07 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.02 Total: 19.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -40.07 -9.46 -49.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085630422.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.220 kcal (2) G-P(sol) polarization free energy of solvation -40.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds