Wall clock time and date at job start Wed Apr 1 2020 04:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50709 * 109.46943 * 2 1 4 4 O 1.21278 * 120.00124 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99645 * 180.02562 * 3 2 1 6 6 C 1.39959 * 119.99559 * 184.97090 * 5 3 2 7 7 C 1.38989 * 119.99549 * 212.41910 * 6 5 3 8 8 C 1.38213 * 120.22086 * 180.02562 * 7 6 5 9 9 C 1.38023 * 120.22082 * 359.74571 * 8 7 6 10 10 C 1.39578 * 119.99611 * 0.50907 * 9 8 7 11 11 C 1.47860 * 120.10802 * 179.77196 * 10 9 8 12 12 O 1.21556 * 119.99740 * 209.55705 * 11 10 9 13 13 N 1.34774 * 120.00513 * 29.55248 * 11 10 9 14 14 C 1.46501 * 119.99760 * 357.18012 * 13 11 10 15 15 C 1.46494 * 120.00019 * 177.17821 * 13 11 10 16 16 C 1.53006 * 109.47116 * 98.00408 * 15 13 11 17 17 H 1.09001 * 112.96406 * 53.70313 * 16 15 13 18 18 C 1.53949 * 113.76925 * 185.38511 * 16 15 13 19 19 C 1.53947 * 86.28724 * 137.90581 * 18 16 15 20 20 N 1.47579 * 86.12011 * 336.38887 * 19 18 16 21 21 C 1.36936 * 134.49840 * 204.63310 * 20 19 18 22 22 H 1.07997 * 120.00366 * 196.74846 * 21 20 19 23 23 C 1.38815 * 119.99625 * 16.75583 * 21 20 19 24 24 N 1.31624 * 119.99871 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00050 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46749 * 59.99560 * 25 23 21 27 27 H 1.48500 * 109.46931 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47132 * 299.99765 * 25 23 21 29 29 C 1.38593 * 119.99954 * 32.44090 * 6 5 3 30 30 H 1.09003 * 109.46961 * 299.99622 * 1 2 3 31 31 H 1.09001 * 109.47195 * 59.99576 * 1 2 3 32 32 H 1.09000 * 109.47281 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46961 * 240.00378 * 2 1 3 34 34 H 1.08993 * 109.47645 * 119.99958 * 2 1 3 35 35 H 0.96998 * 120.00122 * 4.96772 * 5 3 2 36 36 H 1.07999 * 119.89293 * 0.04209 * 7 6 5 37 37 H 1.07997 * 119.88881 * 179.97438 * 8 7 6 38 38 H 1.07999 * 119.99763 * 180.25620 * 9 8 7 39 39 H 1.08996 * 109.47340 * 264.65146 * 14 13 11 40 40 H 1.08997 * 109.47111 * 24.65905 * 14 13 11 41 41 H 1.09003 * 109.46686 * 144.65313 * 14 13 11 42 42 H 1.08996 * 109.47759 * 338.00067 * 15 13 11 43 43 H 1.09001 * 109.46972 * 217.99569 * 15 13 11 44 44 H 1.08992 * 113.73982 * 252.24856 * 18 16 15 45 45 H 1.08996 * 113.74215 * 23.45429 * 18 16 15 46 46 H 1.08996 * 113.77303 * 90.69756 * 19 18 16 47 47 H 1.09005 * 113.76796 * 221.98241 * 19 18 16 48 48 H 0.97000 * 119.99552 * 180.02562 * 24 23 21 49 49 H 1.08001 * 120.11448 * 0.02562 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8247 2.9822 0.1045 7 6 5.0039 3.3534 -0.5307 8 6 5.4700 4.6507 -0.4297 9 6 4.7648 5.5875 0.2984 10 6 3.5823 5.2234 0.9444 11 6 2.8275 6.2237 1.7292 12 8 2.1626 5.8714 2.6839 13 7 2.8767 7.5261 1.3862 14 6 3.7265 7.9591 0.2741 15 6 2.0804 8.5088 2.1252 16 6 2.9605 9.1951 3.1719 17 1 3.8680 9.6254 2.7483 18 6 2.1908 10.1562 4.0960 19 6 3.0305 9.5659 5.2433 20 7 3.1933 8.3800 4.3800 21 6 3.4554 7.0555 4.6082 22 1 3.7931 6.4247 3.7993 23 6 3.2867 6.5235 5.8792 24 7 2.8753 7.2925 6.8651 25 14 3.6434 4.7165 6.1904 26 1 5.0641 4.4297 5.8670 27 1 3.3877 4.4003 7.6186 28 1 2.7626 3.8833 5.3331 29 6 3.1119 3.9141 0.8423 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9871 0.9330 -0.0736 36 1 5.5578 2.6258 -1.1054 37 1 6.3871 4.9331 -0.9251 38 1 5.1301 6.6012 0.3715 39 1 4.6870 8.2987 0.6617 40 1 3.8848 7.1243 -0.4086 41 1 3.2399 8.7765 -0.2581 42 1 1.2510 8.0051 2.6217 43 1 1.6903 9.2550 1.4330 44 1 2.3934 11.2091 3.9007 45 1 1.1261 9.9349 4.1704 46 1 3.9596 10.1044 5.4299 47 1 2.4599 9.3747 6.1522 48 1 2.7578 6.9208 7.7534 49 1 2.1958 3.6274 1.3372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085630422.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:08 Heat of formation + Delta-G solvation = 18.863711 kcal Electronic energy + Delta-G solvation = -31325.053717 eV Core-core repulsion = 27254.336408 eV Total energy + Delta-G solvation = -4070.717310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.86373 -41.04728 -39.64374 -38.83280 -36.62006 -35.81139 -34.13919 -33.85517 -32.28973 -31.10261 -29.83601 -29.33313 -27.67611 -25.88171 -25.21543 -25.09855 -23.42315 -23.21643 -21.30080 -20.86423 -20.70212 -18.87077 -18.70450 -18.32566 -17.57700 -17.11000 -17.02299 -16.82807 -16.64545 -16.39453 -15.83288 -15.71176 -15.32915 -15.07053 -14.77020 -14.68329 -14.38845 -14.30745 -14.04653 -13.74431 -13.50805 -13.32160 -13.22957 -13.08300 -12.96532 -12.78942 -12.66635 -12.62808 -12.43462 -12.40515 -12.12555 -12.07119 -11.73271 -11.54238 -11.40944 -11.31528 -10.95062 -10.78621 -10.51865 -9.96485 -9.48991 -9.17104 -8.64052 -7.79433 -5.10860 -0.08615 0.26294 1.26152 1.33828 1.43499 1.49549 1.95281 1.99595 2.18314 2.50157 2.82434 3.37870 3.44074 3.58247 3.69119 3.92536 4.00999 4.04206 4.13255 4.17784 4.19820 4.28234 4.36995 4.41578 4.44107 4.50113 4.52785 4.68139 4.69956 4.76325 4.87459 4.89006 4.91393 4.93750 4.98041 5.07690 5.12999 5.20662 5.25383 5.29210 5.39289 5.40824 5.43084 5.64731 5.74379 5.85128 5.94839 6.13797 6.36927 6.52802 7.06343 7.10562 7.38681 7.75401 8.68760 9.35692 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010753 B = 0.003850 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.205598 B = 7271.156899 C = 8384.157707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.495 3.505 4 O -0.571 6.571 5 N -0.661 5.661 6 C 0.127 3.873 7 C -0.113 4.113 8 C -0.095 4.095 9 C -0.121 4.121 10 C -0.129 4.129 11 C 0.529 3.471 12 O -0.551 6.551 13 N -0.606 5.606 14 C 0.056 3.944 15 C 0.123 3.877 16 C 0.127 3.873 17 H 0.068 0.932 18 C -0.126 4.126 19 C 0.128 3.872 20 N -0.627 5.627 21 C -0.160 4.160 22 H 0.071 0.929 23 C -0.074 4.074 24 N -0.956 5.956 25 Si 0.947 3.053 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.302 1.302 29 C -0.105 4.105 30 H 0.032 0.968 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.136 0.864 34 H 0.119 0.881 35 H 0.433 0.567 36 H 0.175 0.825 37 H 0.179 0.821 38 H 0.164 0.836 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.044 0.956 43 H 0.114 0.886 44 H 0.097 0.903 45 H 0.068 0.932 46 H 0.024 0.976 47 H 0.046 0.954 48 H 0.239 0.761 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.657 -8.752 -24.409 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.170 4.170 3 C 0.285 3.715 4 O -0.449 6.449 5 N -0.309 5.309 6 C 0.032 3.968 7 C -0.133 4.133 8 C -0.113 4.113 9 C -0.139 4.139 10 C -0.133 4.133 11 C 0.318 3.682 12 O -0.428 6.428 13 N -0.339 5.339 14 C -0.084 4.084 15 C -0.001 4.001 16 C 0.021 3.979 17 H 0.085 0.915 18 C -0.165 4.165 19 C 0.003 3.997 20 N -0.353 5.353 21 C -0.290 4.290 22 H 0.089 0.911 23 C -0.265 4.265 24 N -0.609 5.609 25 Si 0.778 3.222 26 H -0.204 1.204 27 H -0.216 1.216 28 H -0.230 1.230 29 C -0.126 4.126 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.154 0.846 34 H 0.137 0.863 35 H 0.273 0.727 36 H 0.192 0.808 37 H 0.197 0.803 38 H 0.181 0.819 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.062 0.938 43 H 0.132 0.868 44 H 0.115 0.885 45 H 0.086 0.914 46 H 0.041 0.959 47 H 0.064 0.936 48 H 0.048 0.952 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.730 -8.636 -23.726 25.891 hybrid contribution -0.126 -1.255 1.289 1.804 sum 5.605 -9.892 -22.437 25.153 Atomic orbital electron populations 1.21575 0.93908 1.02917 1.01539 1.21725 0.97853 0.89993 1.07437 1.22023 0.81626 0.93814 0.74055 1.90768 1.56468 1.48453 1.49177 1.43503 1.08102 1.06748 1.72539 1.17770 0.96002 0.85408 0.97579 1.21502 0.94853 0.98314 0.98599 1.21448 1.00322 0.91555 0.98000 1.22242 0.92867 1.02601 0.96197 1.19885 0.98463 0.93674 1.01242 1.18834 0.82092 0.83578 0.83728 1.90919 1.43090 1.80500 1.28318 1.47634 1.46322 1.05779 1.34155 1.22718 0.94790 1.02575 0.88363 1.21754 0.93517 0.90748 0.94090 1.22930 0.95902 0.90178 0.88932 0.91457 1.23470 0.98688 0.98601 0.95711 1.22451 0.95611 0.85722 0.95888 1.46262 1.83107 1.02376 1.03527 1.19136 1.31893 0.84009 0.93960 0.91150 1.25341 1.04178 0.99837 0.97105 1.69949 1.56067 1.34548 1.00289 0.85585 0.77624 0.83233 0.75721 1.20442 1.21645 1.22972 1.21001 1.00425 0.93114 0.98096 0.94840 0.93213 0.88885 0.84578 0.86335 0.72678 0.80778 0.80329 0.81879 0.91184 0.88309 0.88727 0.93778 0.86849 0.88510 0.91372 0.95854 0.93553 0.95198 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.20 71.98 0.66 -1.85 16 2 C -0.13 -1.80 6.42 29.85 0.19 -1.61 16 3 C 0.49 12.23 7.58 87.66 0.66 12.89 16 4 O -0.57 -21.15 13.59 -3.02 -0.04 -21.19 16 5 N -0.66 -13.23 5.34 -303.59 -1.62 -14.85 16 6 C 0.13 3.37 6.29 38.11 0.24 3.61 16 7 C -0.11 -1.98 9.95 22.44 0.22 -1.76 16 8 C -0.10 -1.66 10.02 22.21 0.22 -1.43 16 9 C -0.12 -3.06 7.45 22.54 0.17 -2.90 16 10 C -0.13 -4.78 5.51 -20.10 -0.11 -4.89 16 11 C 0.53 23.84 5.82 86.79 0.50 24.35 16 12 O -0.55 -31.87 13.10 -3.89 -0.05 -31.92 16 13 N -0.61 -21.98 2.88 -850.19 -2.45 -24.43 16 14 C 0.06 1.27 8.80 127.77 1.12 2.39 16 15 C 0.12 4.62 5.39 86.38 0.47 5.09 16 16 C 0.13 5.15 4.52 45.09 0.20 5.36 16 17 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 18 C -0.13 -4.82 7.86 31.26 0.25 -4.58 16 19 C 0.13 6.48 7.96 86.48 0.69 7.17 16 20 N -0.63 -34.39 3.54 -694.02 -2.46 -36.85 16 21 C -0.16 -10.03 8.40 84.03 0.71 -9.33 16 22 H 0.07 4.47 4.95 -2.91 -0.01 4.45 16 23 C -0.07 -4.81 5.50 84.86 0.47 -4.35 16 24 N -0.96 -64.33 11.28 21.65 0.24 -64.09 16 25 Si 0.95 54.55 29.55 68.60 2.03 56.58 16 26 H -0.28 -15.10 7.11 99.48 0.71 -14.39 16 27 H -0.29 -16.29 7.11 99.48 0.71 -15.59 16 28 H -0.30 -18.23 7.11 99.48 0.71 -17.53 16 29 C -0.10 -4.01 8.21 22.66 0.19 -3.83 16 30 H 0.03 0.79 8.10 -2.39 -0.02 0.77 16 31 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.43 4.17 8.81 -92.71 -0.82 3.35 16 36 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 37 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.16 3.47 4.62 -2.91 -0.01 3.45 16 39 H 0.07 1.41 7.44 -2.39 -0.02 1.40 16 40 H 0.10 2.00 4.65 -2.39 -0.01 1.98 16 41 H 0.09 1.56 8.04 -2.39 -0.02 1.54 16 42 H 0.04 2.10 7.23 -2.39 -0.02 2.08 16 43 H 0.11 3.11 8.05 -2.39 -0.02 3.09 16 44 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 45 H 0.07 2.70 8.10 -2.39 -0.02 2.68 16 46 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.05 2.70 6.60 -2.38 -0.02 2.69 16 48 H 0.24 15.77 8.31 -92.71 -0.77 15.00 16 49 H 0.09 4.50 6.20 -2.91 -0.02 4.48 16 Total: -1.00 -102.53 389.65 2.67 -99.86 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.17 Total: 12.56 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: 6.85 Total: 24.33 kcal Atomic # 7 Polarization: -133.93 SS G_CDS: -6.28 Total: -140.22 kcal Atomic # 8 Polarization: -53.02 SS G_CDS: -0.09 Total: -53.11 kcal Atomic # 14 Polarization: 54.55 SS G_CDS: 2.03 Total: 56.58 kcal Total: -102.53 2.67 -99.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085630422.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.722 kcal (2) G-P(sol) polarization free energy of solvation -102.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds