Wall clock time and date at job start Wed Apr 1 2020 04:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50698 * 109.47385 * 2 1 4 4 O 1.21281 * 120.00231 * 359.97438 * 3 2 1 5 5 N 1.34781 * 120.00342 * 180.02562 * 3 2 1 6 6 C 1.39286 * 120.00233 * 184.59452 * 5 3 2 7 7 C 1.38854 * 120.16628 * 330.81653 * 6 5 3 8 8 C 1.38021 * 120.07094 * 180.27436 * 7 6 5 9 9 C 1.38562 * 120.40340 * 359.72154 * 8 7 6 10 10 C 1.37799 * 120.33272 * 359.97438 * 9 8 7 11 11 C 1.39693 * 119.92207 * 0.02562 * 10 9 8 12 12 C 1.47514 * 120.20223 * 180.02562 * 11 10 9 13 13 O 1.21593 * 120.00394 * 130.63614 * 12 11 10 14 14 N 1.34779 * 119.99960 * 310.63979 * 12 11 10 15 15 C 1.46503 * 119.99668 * 4.27088 * 14 12 11 16 16 C 1.46498 * 120.00371 * 184.27028 * 14 12 11 17 17 C 1.52995 * 109.47119 * 264.05933 * 16 14 12 18 18 H 1.09007 * 112.96232 * 291.71117 * 17 16 14 19 19 C 1.53945 * 113.77252 * 63.38876 * 17 16 14 20 20 C 1.53945 * 86.28931 * 137.90889 * 19 17 16 21 21 N 1.47581 * 113.76983 * 160.03453 * 17 16 14 22 22 C 1.36939 * 134.49227 * 41.06677 * 21 17 16 23 23 H 1.08000 * 120.00255 * 4.61739 * 22 21 17 24 24 C 1.38813 * 119.99566 * 184.62040 * 22 21 17 25 25 N 1.31617 * 120.00462 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99658 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47114 * 89.99692 * 26 24 22 28 28 H 1.48498 * 109.47401 * 209.99683 * 26 24 22 29 29 H 1.48503 * 109.47086 * 329.99935 * 26 24 22 30 30 H 1.08996 * 109.47333 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46931 * 300.00239 * 1 2 3 32 32 H 1.09002 * 109.47539 * 59.99581 * 1 2 3 33 33 H 1.09005 * 109.47300 * 240.00114 * 2 1 3 34 34 H 1.09001 * 109.47863 * 119.99982 * 2 1 3 35 35 H 0.97003 * 119.99604 * 4.59178 * 5 3 2 36 36 H 1.08000 * 119.96325 * 0.02562 * 7 6 5 37 37 H 1.07996 * 119.79994 * 179.73917 * 8 7 6 38 38 H 1.07999 * 119.83754 * 179.97438 * 9 8 7 39 39 H 1.07995 * 120.04298 * 179.97438 * 10 9 8 40 40 H 1.08997 * 109.47534 * 84.70208 * 15 14 12 41 41 H 1.08995 * 109.47383 * 324.70098 * 15 14 12 42 42 H 1.09000 * 109.47210 * 204.70058 * 15 14 12 43 43 H 1.09007 * 109.46639 * 24.05386 * 16 14 12 44 44 H 1.08998 * 109.47082 * 144.05539 * 16 14 12 45 45 H 1.09004 * 113.74362 * 252.25201 * 19 17 16 46 46 H 1.08998 * 113.74105 * 23.45877 * 19 17 16 47 47 H 1.09004 * 113.77183 * 90.69526 * 20 19 17 48 48 H 1.09005 * 113.77113 * 221.98081 * 20 19 17 49 49 H 0.97004 * 120.00106 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8225 2.9764 0.0961 7 6 3.0588 4.0263 -0.3965 8 6 3.5241 5.3225 -0.3048 9 6 4.7507 5.5873 0.2828 10 6 5.5194 4.5587 0.7828 11 6 5.0618 3.2416 0.6973 12 6 5.8794 2.1358 1.2310 13 8 5.3774 1.3094 1.9682 14 7 7.1829 2.0416 0.9016 15 6 7.8108 3.0875 0.0903 16 6 7.9719 0.8935 1.3547 17 6 8.7200 1.2630 2.6371 18 1 9.5037 2.0030 2.4741 19 6 7.7946 1.5904 3.8230 20 6 8.7743 0.7725 4.6839 21 7 9.1587 0.0962 3.4271 22 6 9.7022 -1.1222 3.1185 23 1 9.9607 -1.3549 2.0960 24 6 9.9209 -2.0583 4.1199 25 7 9.6063 -1.7746 5.3661 26 14 10.6617 -3.7207 3.6988 27 1 12.1416 -3.6413 3.7928 28 1 10.1592 -4.7423 4.6522 29 1 10.2731 -4.0999 2.3166 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9872 0.9324 -0.0682 36 1 2.1015 3.8280 -0.8555 37 1 2.9285 6.1353 -0.6932 38 1 5.1061 6.6049 0.3493 39 1 6.4749 4.7704 1.2395 40 1 8.1359 3.9027 0.7366 41 1 7.0912 3.4649 -0.6363 42 1 8.6724 2.6732 -0.4332 43 1 7.3081 0.0514 1.5512 44 1 8.6895 0.6180 0.5819 45 1 7.7657 2.6498 4.0777 46 1 6.8028 1.1457 3.7415 47 1 9.5751 1.3673 5.1234 48 1 8.2846 0.1189 5.4060 49 1 9.7595 -2.4287 6.0659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085880078.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:14 Heat of formation + Delta-G solvation = 23.018385 kcal Electronic energy + Delta-G solvation = -30818.058189 eV Core-core repulsion = 26747.521040 eV Total energy + Delta-G solvation = -4070.537149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.12162 -39.80793 -38.38480 -37.44868 -35.49338 -34.81819 -33.13205 -32.17949 -31.45957 -29.84426 -28.38209 -27.79006 -26.56612 -25.10400 -23.83790 -23.20754 -22.81551 -21.88093 -20.44901 -19.63124 -18.91536 -17.87537 -17.43187 -17.18850 -16.61783 -16.31347 -15.92014 -15.53130 -15.21793 -14.77294 -14.68899 -14.44624 -14.10702 -13.91431 -13.74188 -13.56301 -13.39111 -12.92746 -12.80990 -12.61312 -12.55709 -12.30975 -12.09443 -12.04582 -11.94363 -11.59587 -11.41558 -11.38557 -11.00021 -10.85764 -10.70722 -10.62555 -10.44857 -9.93381 -9.84013 -9.71690 -9.65525 -9.48386 -9.03592 -8.73240 -8.40231 -8.28885 -6.81579 -5.70886 -3.04539 0.81453 1.15485 2.35648 2.75867 2.83920 3.09101 3.40261 3.44531 3.47283 3.63947 4.35089 4.44199 4.50721 4.70322 4.78696 4.83342 4.86437 5.07649 5.11577 5.22983 5.27738 5.29879 5.35234 5.37778 5.46702 5.56075 5.59606 5.65387 5.68255 5.75938 5.87378 5.95400 5.96183 6.02029 6.08787 6.12709 6.23708 6.32568 6.39157 6.57939 6.70135 6.76531 6.79390 6.85570 7.12149 7.32404 7.47163 7.59216 7.68029 7.84947 8.04512 8.27486 9.08166 9.75738 10.66788 11.45174 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011927 B = 0.003011 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.077692 B = 9296.801474 C =10871.861997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C 0.517 3.483 4 O -0.523 6.523 5 N -0.663 5.663 6 C 0.193 3.807 7 C -0.138 4.138 8 C -0.084 4.084 9 C -0.145 4.145 10 C -0.070 4.070 11 C -0.154 4.154 12 C 0.554 3.446 13 O -0.520 6.520 14 N -0.601 5.601 15 C 0.076 3.924 16 C 0.116 3.884 17 C 0.129 3.871 18 H 0.041 0.959 19 C -0.157 4.157 20 C 0.155 3.845 21 N -0.600 5.600 22 C -0.223 4.223 23 H 0.077 0.923 24 C -0.007 4.007 25 N -0.918 5.918 26 Si 0.910 3.090 27 H -0.290 1.290 28 H -0.290 1.290 29 H -0.281 1.281 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.416 0.584 36 H 0.152 0.848 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.039 0.961 46 H 0.088 0.912 47 H 0.021 0.979 48 H 0.076 0.924 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.601 12.719 -15.350 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C 0.307 3.693 4 O -0.399 6.399 5 N -0.306 5.306 6 C 0.096 3.904 7 C -0.158 4.158 8 C -0.103 4.103 9 C -0.163 4.163 10 C -0.089 4.089 11 C -0.160 4.160 12 C 0.341 3.659 13 O -0.396 6.396 14 N -0.334 5.334 15 C -0.067 4.067 16 C -0.007 4.007 17 C 0.021 3.979 18 H 0.058 0.942 19 C -0.195 4.195 20 C 0.030 3.970 21 N -0.326 5.326 22 C -0.351 4.351 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.565 5.565 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.252 0.748 36 H 0.169 0.831 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.086 0.914 45 H 0.058 0.942 46 H 0.106 0.894 47 H 0.038 0.962 48 H 0.094 0.906 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.341 12.479 -14.862 23.549 hybrid contribution 1.259 -1.099 -0.091 1.674 sum -12.081 11.379 -14.953 22.339 Atomic orbital electron populations 1.21535 0.92612 1.01909 1.03335 1.21670 0.98864 0.92770 1.05202 1.21016 0.81195 0.92529 0.74601 1.90638 1.55196 1.46146 1.47924 1.43460 1.08438 1.07290 1.71429 1.17652 0.92402 0.84837 0.95493 1.21466 1.01475 0.91452 1.01447 1.21211 0.95460 0.96337 0.97320 1.21056 0.95221 0.99142 1.00923 1.21221 0.99704 0.90702 0.97288 1.19766 0.96552 0.94793 1.04903 1.18174 0.81805 0.84905 0.81023 1.90839 1.71950 1.41870 1.34970 1.47778 1.09287 1.24201 1.52095 1.21948 0.98657 0.91157 0.94978 1.21916 0.94534 0.87523 0.96756 1.22515 0.93451 0.90477 0.91498 0.94209 1.23810 0.99916 0.97913 0.97881 1.22297 0.92401 0.91426 0.90839 1.45952 1.73588 1.11242 1.01826 1.18962 1.34088 0.88407 0.93613 0.90518 1.24776 1.01887 0.98258 0.95416 1.69831 1.52699 1.34657 0.99289 0.86164 0.78706 0.83825 0.77298 1.21739 1.21652 1.20663 0.91767 0.91822 0.92005 0.88523 0.87942 0.74763 0.83088 0.85491 0.85475 0.84862 0.92449 0.91192 0.90807 0.88801 0.91389 0.94192 0.89356 0.96154 0.90574 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.20 37.15 0.34 -0.77 16 2 C -0.15 -1.24 6.42 -27.89 -0.18 -1.42 16 3 C 0.52 6.09 7.70 -10.98 -0.08 6.01 16 4 O -0.52 -7.40 13.06 5.56 0.07 -7.33 16 5 N -0.66 -7.94 4.78 -9.68 -0.05 -7.98 16 6 C 0.19 2.46 6.39 -83.48 -0.53 1.93 16 7 C -0.14 -1.62 8.74 -39.43 -0.34 -1.96 16 8 C -0.08 -0.80 10.03 -39.54 -0.40 -1.20 16 9 C -0.14 -1.29 10.02 -39.62 -0.40 -1.69 16 10 C -0.07 -0.73 7.80 -39.20 -0.31 -1.04 16 11 C -0.15 -1.98 4.88 -104.81 -0.51 -2.49 16 12 C 0.55 8.40 6.14 -12.48 -0.08 8.32 16 13 O -0.52 -9.78 13.84 5.28 0.07 -9.71 16 14 N -0.60 -8.40 2.77 -182.82 -0.51 -8.91 16 15 C 0.08 0.75 9.11 59.85 0.54 1.29 16 16 C 0.12 2.02 5.42 -4.05 -0.02 2.00 16 17 C 0.13 2.63 4.58 -66.87 -0.31 2.32 16 18 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.16 -3.29 7.22 -25.79 -0.19 -3.48 16 20 C 0.16 3.87 7.64 -2.85 -0.02 3.85 16 21 N -0.60 -15.49 3.58 -169.71 -0.61 -16.10 16 22 C -0.22 -6.22 10.51 -15.06 -0.16 -6.38 16 23 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 24 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 25 N -0.92 -27.71 11.32 55.49 0.63 -27.09 16 26 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.60 8.10 -51.92 -0.42 0.18 16 32 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.42 4.65 7.67 -40.82 -0.31 4.34 16 36 H 0.15 1.85 5.76 -52.49 -0.30 1.55 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.13 1.22 6.34 -52.49 -0.33 0.89 16 40 H 0.06 0.51 7.06 -51.93 -0.37 0.14 16 41 H 0.07 0.59 6.32 -51.93 -0.33 0.26 16 42 H 0.07 0.66 7.90 -51.93 -0.41 0.25 16 43 H 0.09 1.91 7.31 -51.92 -0.38 1.54 16 44 H 0.07 1.09 7.95 -51.93 -0.41 0.68 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.09 2.01 6.30 -51.93 -0.33 1.68 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.08 2.11 6.98 -51.93 -0.36 1.75 16 49 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 394.45 15.07 5.94 5.94 Total: -1.00 -34.85 394.45 -9.50 -44.36 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.30 Total: 4.61 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -2.73 Total: 5.01 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.53 Total: -60.08 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.15 Total: -17.03 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.85 -9.50 -44.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085880078.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.374 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds