Wall clock time and date at job start Wed Apr 1 2020 04:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50698 * 109.47385 * 2 1 4 4 O 1.21281 * 120.00231 * 359.97438 * 3 2 1 5 5 N 1.34781 * 120.00342 * 180.02562 * 3 2 1 6 6 C 1.39286 * 120.00233 * 184.59452 * 5 3 2 7 7 C 1.38854 * 120.16628 * 330.81653 * 6 5 3 8 8 C 1.38021 * 120.07094 * 180.27436 * 7 6 5 9 9 C 1.38562 * 120.40340 * 359.72154 * 8 7 6 10 10 C 1.37799 * 120.33272 * 359.97438 * 9 8 7 11 11 C 1.39693 * 119.92207 * 0.02562 * 10 9 8 12 12 C 1.47514 * 120.20223 * 180.02562 * 11 10 9 13 13 O 1.21593 * 120.00394 * 130.63614 * 12 11 10 14 14 N 1.34779 * 119.99960 * 310.63979 * 12 11 10 15 15 C 1.46503 * 119.99668 * 4.27088 * 14 12 11 16 16 C 1.46498 * 120.00371 * 184.27028 * 14 12 11 17 17 C 1.52995 * 109.47119 * 264.05933 * 16 14 12 18 18 H 1.09007 * 112.96232 * 291.71117 * 17 16 14 19 19 C 1.53945 * 113.77252 * 63.38876 * 17 16 14 20 20 C 1.53945 * 86.28931 * 137.90889 * 19 17 16 21 21 N 1.47581 * 113.76983 * 160.03453 * 17 16 14 22 22 C 1.36939 * 134.49227 * 41.06677 * 21 17 16 23 23 H 1.08000 * 120.00255 * 4.61739 * 22 21 17 24 24 C 1.38813 * 119.99566 * 184.62040 * 22 21 17 25 25 N 1.31617 * 120.00462 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99658 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47114 * 89.99692 * 26 24 22 28 28 H 1.48498 * 109.47401 * 209.99683 * 26 24 22 29 29 H 1.48503 * 109.47086 * 329.99935 * 26 24 22 30 30 H 1.08996 * 109.47333 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46931 * 300.00239 * 1 2 3 32 32 H 1.09002 * 109.47539 * 59.99581 * 1 2 3 33 33 H 1.09005 * 109.47300 * 240.00114 * 2 1 3 34 34 H 1.09001 * 109.47863 * 119.99982 * 2 1 3 35 35 H 0.97003 * 119.99604 * 4.59178 * 5 3 2 36 36 H 1.08000 * 119.96325 * 0.02562 * 7 6 5 37 37 H 1.07996 * 119.79994 * 179.73917 * 8 7 6 38 38 H 1.07999 * 119.83754 * 179.97438 * 9 8 7 39 39 H 1.07995 * 120.04298 * 179.97438 * 10 9 8 40 40 H 1.08997 * 109.47534 * 84.70208 * 15 14 12 41 41 H 1.08995 * 109.47383 * 324.70098 * 15 14 12 42 42 H 1.09000 * 109.47210 * 204.70058 * 15 14 12 43 43 H 1.09007 * 109.46639 * 24.05386 * 16 14 12 44 44 H 1.08998 * 109.47082 * 144.05539 * 16 14 12 45 45 H 1.09004 * 113.74362 * 252.25201 * 19 17 16 46 46 H 1.08998 * 113.74105 * 23.45877 * 19 17 16 47 47 H 1.09004 * 113.77183 * 90.69526 * 20 19 17 48 48 H 1.09005 * 113.77113 * 221.98081 * 20 19 17 49 49 H 0.97004 * 120.00106 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8225 2.9764 0.0961 7 6 3.0588 4.0263 -0.3965 8 6 3.5241 5.3225 -0.3048 9 6 4.7507 5.5873 0.2828 10 6 5.5194 4.5587 0.7828 11 6 5.0618 3.2416 0.6973 12 6 5.8794 2.1358 1.2310 13 8 5.3774 1.3094 1.9682 14 7 7.1829 2.0416 0.9016 15 6 7.8108 3.0875 0.0903 16 6 7.9719 0.8935 1.3547 17 6 8.7200 1.2630 2.6371 18 1 9.5037 2.0030 2.4741 19 6 7.7946 1.5904 3.8230 20 6 8.7743 0.7725 4.6839 21 7 9.1587 0.0962 3.4271 22 6 9.7022 -1.1222 3.1185 23 1 9.9607 -1.3549 2.0960 24 6 9.9209 -2.0583 4.1199 25 7 9.6063 -1.7746 5.3661 26 14 10.6617 -3.7207 3.6988 27 1 12.1416 -3.6413 3.7928 28 1 10.1592 -4.7423 4.6522 29 1 10.2731 -4.0999 2.3166 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9872 0.9324 -0.0682 36 1 2.1015 3.8280 -0.8555 37 1 2.9285 6.1353 -0.6932 38 1 5.1061 6.6049 0.3493 39 1 6.4749 4.7704 1.2395 40 1 8.1359 3.9027 0.7366 41 1 7.0912 3.4649 -0.6363 42 1 8.6724 2.6732 -0.4332 43 1 7.3081 0.0514 1.5512 44 1 8.6895 0.6180 0.5819 45 1 7.7657 2.6498 4.0777 46 1 6.8028 1.1457 3.7415 47 1 9.5751 1.3673 5.1234 48 1 8.2846 0.1189 5.4060 49 1 9.7595 -2.4287 6.0659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085880078.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:13 Heat of formation + Delta-G solvation = 1.140777 kcal Electronic energy + Delta-G solvation = -30819.006874 eV Core-core repulsion = 26747.521040 eV Total energy + Delta-G solvation = -4071.485834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.06867 -40.93206 -39.65474 -38.83368 -36.63344 -35.79441 -34.22640 -33.86808 -32.46008 -30.66552 -29.84837 -29.67301 -27.55590 -25.91516 -25.32978 -24.87645 -23.89275 -23.01350 -21.31655 -20.95795 -20.52370 -18.86066 -18.60728 -18.29328 -18.08673 -17.46438 -17.01365 -16.76728 -16.50356 -16.06542 -15.90850 -15.64564 -15.37069 -15.01332 -14.90634 -14.76482 -14.44599 -14.16021 -13.90591 -13.75242 -13.69334 -13.34902 -13.25034 -13.08783 -12.93790 -12.88976 -12.69937 -12.55503 -12.46473 -12.39482 -12.29153 -12.10262 -11.78806 -11.59627 -11.56151 -11.28348 -10.90751 -10.81645 -10.78673 -9.89696 -9.64863 -9.16437 -8.86697 -7.85991 -5.20700 -0.05418 0.34038 1.45114 1.47455 1.47926 1.56108 1.67148 1.93944 2.00910 2.50391 2.80031 3.31804 3.40259 3.54073 3.58362 3.89632 3.93333 4.09786 4.16494 4.18511 4.22168 4.32958 4.35821 4.41923 4.45274 4.48739 4.49701 4.65310 4.68253 4.77897 4.84662 4.92521 4.94509 4.99073 5.00297 5.03351 5.09600 5.17339 5.26718 5.28177 5.33392 5.44808 5.51983 5.54804 5.55520 5.77627 5.96922 5.98725 6.22714 6.41264 6.92794 6.95596 7.13424 7.64448 8.61012 9.30635 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011927 B = 0.003011 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.077692 B = 9296.801474 C =10871.861997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.142 4.142 3 C 0.510 3.490 4 O -0.552 6.552 5 N -0.664 5.664 6 C 0.173 3.827 7 C -0.153 4.153 8 C -0.077 4.077 9 C -0.134 4.134 10 C -0.068 4.068 11 C -0.171 4.171 12 C 0.554 3.446 13 O -0.567 6.567 14 N -0.595 5.595 15 C 0.069 3.931 16 C 0.130 3.870 17 C 0.137 3.863 18 H 0.063 0.937 19 C -0.133 4.133 20 C 0.149 3.851 21 N -0.628 5.628 22 C -0.226 4.226 23 H 0.089 0.911 24 C -0.073 4.073 25 N -0.957 5.957 26 Si 0.978 3.022 27 H -0.286 1.286 28 H -0.299 1.299 29 H -0.264 1.264 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.416 0.584 36 H 0.140 0.860 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.150 0.850 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.019 0.981 48 H 0.037 0.963 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.923 14.708 -17.775 25.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.181 4.181 3 C 0.301 3.699 4 O -0.430 6.430 5 N -0.307 5.307 6 C 0.076 3.924 7 C -0.173 4.173 8 C -0.096 4.096 9 C -0.153 4.153 10 C -0.086 4.086 11 C -0.176 4.176 12 C 0.343 3.657 13 O -0.446 6.446 14 N -0.327 5.327 15 C -0.073 4.073 16 C 0.006 3.994 17 C 0.030 3.970 18 H 0.080 0.920 19 C -0.172 4.172 20 C 0.023 3.977 21 N -0.354 5.354 22 C -0.354 4.354 23 H 0.107 0.893 24 C -0.265 4.265 25 N -0.606 5.606 26 Si 0.806 3.194 27 H -0.213 1.213 28 H -0.226 1.226 29 H -0.189 1.189 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.253 0.747 36 H 0.158 0.842 37 H 0.172 0.828 38 H 0.181 0.819 39 H 0.168 0.832 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.037 0.963 48 H 0.056 0.944 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.645 14.518 -17.353 25.919 hybrid contribution 1.019 -1.574 0.625 1.977 sum -11.625 12.944 -16.728 24.136 Atomic orbital electron populations 1.21527 0.92315 1.02950 1.02318 1.21745 0.99038 0.90895 1.06434 1.21615 0.80940 0.93543 0.73799 1.90614 1.55757 1.47259 1.49399 1.43534 1.08574 1.07405 1.71185 1.17917 0.92832 0.85324 0.96327 1.21506 1.01205 0.92416 1.02220 1.21584 0.95876 0.95989 0.96118 1.21429 0.94345 1.00352 0.99135 1.21473 1.00522 0.89832 0.96820 1.19638 0.96516 0.94997 1.06474 1.18569 0.82083 0.84831 0.80197 1.90819 1.72886 1.43761 1.37149 1.47755 1.08828 1.24101 1.52008 1.22255 0.99399 0.90387 0.95221 1.21477 0.94078 0.87848 0.95974 1.22676 0.93470 0.88617 0.92196 0.91956 1.23511 0.97985 0.98643 0.97014 1.22220 0.93237 0.91539 0.90662 1.46287 1.73628 1.12142 1.03367 1.19423 1.32557 0.89360 0.94066 0.89334 1.25665 1.03332 1.02095 0.95428 1.70047 1.54745 1.35579 1.00236 0.85086 0.77703 0.79134 0.77473 1.21324 1.22567 1.18882 0.89631 0.93534 0.92316 0.85948 0.87825 0.74697 0.84229 0.82761 0.81947 0.83218 0.90653 0.89533 0.89395 0.92344 0.89512 0.91276 0.91397 0.96276 0.94447 0.94558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.20 71.98 0.66 -1.50 16 2 C -0.14 -2.40 6.42 29.84 0.19 -2.21 16 3 C 0.51 12.34 7.70 87.66 0.67 13.02 16 4 O -0.55 -16.13 13.06 -3.03 -0.04 -16.17 16 5 N -0.66 -16.26 4.78 -302.94 -1.45 -17.71 16 6 C 0.17 4.34 6.39 38.60 0.25 4.59 16 7 C -0.15 -3.45 8.74 22.37 0.20 -3.25 16 8 C -0.08 -1.24 10.03 22.30 0.22 -1.01 16 9 C -0.13 -1.85 10.02 22.24 0.22 -1.63 16 10 C -0.07 -1.19 7.80 22.52 0.18 -1.02 16 11 C -0.17 -4.14 4.88 -19.99 -0.10 -4.24 16 12 C 0.55 16.43 6.14 86.69 0.53 16.97 16 13 O -0.57 -21.86 13.84 -4.01 -0.06 -21.91 16 14 N -0.60 -15.52 2.77 -850.58 -2.36 -17.87 16 15 C 0.07 1.10 9.11 127.77 1.16 2.26 16 16 C 0.13 4.40 5.42 86.38 0.47 4.86 16 17 C 0.14 5.41 4.58 45.09 0.21 5.62 16 18 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 19 C -0.13 -5.55 7.22 31.25 0.23 -5.32 16 20 C 0.15 7.60 7.64 86.44 0.66 8.26 16 21 N -0.63 -32.62 3.58 -690.86 -2.48 -35.10 16 22 C -0.23 -12.64 10.51 84.03 0.88 -11.76 16 23 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 24 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 25 N -0.96 -59.81 11.32 21.65 0.25 -59.57 16 26 Si 0.98 46.29 29.55 68.60 2.03 48.32 16 27 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 28 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 29 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.90 8.10 -2.38 -0.02 0.88 16 32 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 33 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.42 9.67 7.67 -92.71 -0.71 8.96 16 36 H 0.14 3.45 5.76 -2.91 -0.02 3.44 16 37 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.15 2.10 6.34 -2.91 -0.02 2.08 16 40 H 0.08 0.98 7.06 -2.39 -0.02 0.96 16 41 H 0.09 1.14 6.32 -2.39 -0.02 1.13 16 42 H 0.09 1.20 7.90 -2.39 -0.02 1.18 16 43 H 0.06 2.42 7.31 -2.38 -0.02 2.40 16 44 H 0.09 2.60 7.95 -2.39 -0.02 2.58 16 45 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 46 H 0.07 3.15 6.30 -2.39 -0.02 3.14 16 47 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 48 H 0.04 2.18 6.98 -2.38 -0.02 2.16 16 49 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -79.51 394.45 3.26 -76.25 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.26 Total: 23.87 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 7.10 Total: 19.88 kcal Atomic # 7 Polarization: -124.21 SS G_CDS: -6.04 Total: -130.24 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.10 Total: -38.08 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -79.51 3.26 -76.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085880078.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.391 kcal (2) G-P(sol) polarization free energy of solvation -79.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds