Wall clock time and date at job start Wed Apr 1 2020 04:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46961 * 2 1 4 4 O 1.21280 * 120.00050 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99634 * 179.97438 * 3 2 1 6 6 C 1.39291 * 119.99756 * 185.26992 * 5 3 2 7 7 C 1.38854 * 120.16545 * 34.93835 * 6 5 3 8 8 C 1.38016 * 120.06988 * 180.02562 * 7 6 5 9 9 C 1.38556 * 120.40845 * 0.02562 * 8 7 6 10 10 C 1.37809 * 120.32751 * 359.69823 * 9 8 7 11 11 C 1.39686 * 119.91715 * 0.55016 * 10 9 8 12 12 C 1.47517 * 120.19495 * 179.74463 * 11 10 9 13 13 O 1.21589 * 119.99963 * 175.02135 * 12 11 10 14 14 N 1.34779 * 120.00103 * 354.75024 * 12 11 10 15 15 C 1.46503 * 120.00143 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47504 * 179.97438 * 15 14 12 17 17 H 1.09006 * 112.84616 * 316.20409 * 16 15 14 18 18 C 1.53784 * 113.60989 * 87.49987 * 16 15 14 19 19 C 1.53793 * 87.07451 * 139.98559 * 18 16 15 20 20 H 1.09002 * 113.61206 * 89.11901 * 19 18 16 21 21 N 1.46503 * 113.68519 * 220.00940 * 19 18 16 22 22 C 1.36940 * 119.99727 * 252.53332 * 21 19 18 23 23 H 1.07997 * 120.00149 * 0.02562 * 22 21 19 24 24 C 1.38814 * 119.99792 * 180.02562 * 22 21 19 25 25 N 1.31620 * 119.99939 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99548 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47499 * 60.00221 * 26 24 22 28 28 H 1.48511 * 109.46704 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47457 * 299.99697 * 26 24 22 30 30 C 1.53774 * 87.08085 * 334.56802 * 19 18 16 31 31 H 1.08999 * 109.46682 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47622 * 300.00505 * 1 2 3 33 33 H 1.09000 * 109.46595 * 60.00465 * 1 2 3 34 34 H 1.08994 * 109.47622 * 239.99495 * 2 1 3 35 35 H 1.09009 * 109.46761 * 119.99421 * 2 1 3 36 36 H 0.96994 * 120.00533 * 5.26674 * 5 3 2 37 37 H 1.08002 * 119.96089 * 0.02562 * 7 6 5 38 38 H 1.08003 * 119.79614 * 179.97438 * 8 7 6 39 39 H 1.08002 * 119.83932 * 179.97438 * 9 8 7 40 40 H 1.08001 * 120.03747 * 180.28279 * 10 9 8 41 41 H 0.96993 * 120.00072 * 359.97438 * 14 12 11 42 42 H 1.09002 * 109.47397 * 300.00429 * 15 14 12 43 43 H 1.09003 * 109.46984 * 59.99842 * 15 14 12 44 44 H 1.08989 * 113.61497 * 254.53048 * 18 16 15 45 45 H 1.08993 * 113.61376 * 25.44157 * 18 16 15 46 46 H 0.96994 * 120.00327 * 72.53893 * 21 19 18 47 47 H 0.96996 * 119.99764 * 180.02562 * 25 24 22 48 48 H 1.09007 * 113.61944 * 270.88325 * 30 19 18 49 49 H 1.09007 * 113.69155 * 139.99612 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8226 2.9753 0.1113 7 6 3.1394 3.8947 0.8962 8 6 3.6018 5.1906 1.0042 9 6 4.7476 5.5846 0.3322 10 6 5.4418 4.6844 -0.4467 11 6 4.9832 3.3708 -0.5699 12 6 5.7184 2.4036 -1.4066 13 8 5.3689 1.2394 -1.4398 14 7 6.7741 2.8114 -2.1385 15 6 7.5046 1.8507 -2.9690 16 6 8.6480 2.5664 -3.6910 17 1 8.3487 3.5276 -4.1091 18 6 9.9501 2.6262 -2.8749 19 6 10.6950 2.3457 -4.1908 20 1 10.9566 3.2471 -4.7451 21 7 11.8218 1.4211 -4.0436 22 6 13.1063 1.8897 -4.1188 23 1 13.2887 2.9410 -4.2861 24 6 14.1740 1.0136 -3.9798 25 7 13.9517 -0.2677 -3.7764 26 14 15.9262 1.6530 -4.0817 27 1 16.1481 2.6611 -3.0140 28 1 16.8758 0.5254 -3.9021 29 1 16.1477 2.2808 -5.4091 30 6 9.4050 1.6708 -4.6857 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 3.9871 0.9334 -0.0762 37 1 2.2452 3.5953 1.4227 38 1 3.0666 5.9022 1.6155 39 1 5.1010 6.6012 0.4229 40 1 6.3370 4.9954 -0.9648 41 1 7.0503 3.7409 -2.1153 42 1 7.9111 1.0602 -2.3381 43 1 6.8267 1.4165 -3.7039 44 1 10.1584 3.6109 -2.4566 45 1 10.0428 1.8253 -2.1414 46 1 11.6581 0.4770 -3.8930 47 1 14.6978 -0.8798 -3.6789 48 1 9.3486 0.6086 -4.4472 49 1 9.1721 1.8831 -5.7292 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086227700.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:41 Heat of formation + Delta-G solvation = -39.639143 kcal Electronic energy + Delta-G solvation = -29063.146843 eV Core-core repulsion = 24989.892660 eV Total energy + Delta-G solvation = -4073.254184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.01027 -40.77095 -39.90016 -39.00899 -36.37500 -35.68738 -34.96979 -33.82406 -32.63640 -31.91179 -30.66566 -28.64951 -26.44205 -26.06361 -25.68443 -24.72303 -23.31790 -22.37338 -21.91373 -21.10570 -20.50810 -19.19920 -18.89891 -18.36451 -18.09310 -17.34295 -16.89614 -16.68862 -16.49259 -16.09400 -16.01770 -15.74550 -15.47815 -15.32869 -14.98056 -14.91418 -14.61404 -14.35113 -14.20914 -13.64253 -13.39481 -13.25271 -13.21801 -13.04465 -13.00587 -12.91386 -12.71753 -12.61503 -12.50986 -12.24308 -12.09003 -12.07437 -11.63964 -11.55428 -11.48949 -11.14361 -11.03295 -10.82812 -10.75125 -10.26077 -9.92808 -9.20627 -8.96208 -7.93409 -5.21510 -0.24612 0.27117 1.48118 1.50877 1.51840 1.56938 1.79858 2.07476 2.08971 2.57790 2.83790 3.38266 3.59786 3.63203 3.72997 3.75623 3.81370 3.93616 4.08453 4.13938 4.19609 4.27055 4.35952 4.37627 4.40347 4.42605 4.44772 4.56971 4.67449 4.76876 4.86540 4.95210 4.98810 5.00371 5.00488 5.06061 5.10898 5.23257 5.25329 5.29801 5.33612 5.42019 5.44645 5.47945 5.53846 5.74278 5.91328 6.28878 6.33489 6.48959 6.99223 7.15088 7.34457 8.13351 8.34666 9.29841 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.001831 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.604536 B =15286.724875 C =16257.210488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.140 4.140 3 C 0.505 3.495 4 O -0.560 6.560 5 N -0.664 5.664 6 C 0.185 3.815 7 C -0.151 4.151 8 C -0.069 4.069 9 C -0.140 4.140 10 C -0.063 4.063 11 C -0.187 4.187 12 C 0.559 3.441 13 O -0.579 6.579 14 N -0.704 5.704 15 C 0.139 3.861 16 C -0.096 4.096 17 H 0.121 0.879 18 C -0.152 4.152 19 C 0.142 3.858 20 H 0.080 0.920 21 N -0.730 5.730 22 C -0.243 4.243 23 H 0.079 0.921 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.973 3.027 27 H -0.278 1.278 28 H -0.299 1.299 29 H -0.277 1.277 30 C -0.137 4.137 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.426 0.574 37 H 0.127 0.873 38 H 0.156 0.844 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.415 0.585 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.372 0.628 47 H 0.250 0.750 48 H 0.067 0.933 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.073 10.153 9.307 29.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.179 4.179 3 C 0.295 3.705 4 O -0.438 6.438 5 N -0.314 5.314 6 C 0.088 3.912 7 C -0.171 4.171 8 C -0.088 4.088 9 C -0.158 4.158 10 C -0.081 4.081 11 C -0.193 4.193 12 C 0.348 3.652 13 O -0.461 6.461 14 N -0.355 5.355 15 C 0.016 3.984 16 C -0.115 4.115 17 H 0.139 0.861 18 C -0.193 4.193 19 C 0.033 3.967 20 H 0.098 0.902 21 N -0.367 5.367 22 C -0.375 4.375 23 H 0.097 0.903 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.802 3.198 27 H -0.204 1.204 28 H -0.225 1.225 29 H -0.203 1.203 30 C -0.176 4.176 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.127 0.873 35 H 0.138 0.862 36 H 0.269 0.731 37 H 0.145 0.855 38 H 0.173 0.827 39 H 0.181 0.819 40 H 0.174 0.826 41 H 0.253 0.747 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.086 0.914 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -26.683 9.990 9.216 29.945 hybrid contribution 1.543 -0.544 -0.012 1.636 sum -25.140 9.446 9.203 28.389 Atomic orbital electron populations 1.21534 0.92518 1.02945 1.02192 1.21728 0.98789 0.90828 1.06557 1.21733 0.81202 0.93606 0.73912 1.90675 1.55880 1.47713 1.49509 1.44029 1.08668 1.07883 1.70776 1.18002 0.93365 0.85908 0.93970 1.21189 1.01405 0.94615 0.99921 1.21602 0.95412 0.94819 0.96938 1.21473 0.95377 1.01314 0.97638 1.21524 0.99536 0.90301 0.96787 1.19794 0.99639 0.96012 1.03867 1.18373 0.80110 0.87315 0.79408 1.90550 1.68338 1.20053 1.67148 1.45759 1.30258 1.13909 1.45624 1.21279 0.92780 0.91326 0.93055 1.22475 0.92043 1.00205 0.96784 0.86065 1.23723 0.95994 1.01150 0.98437 1.21966 0.85765 0.93464 0.95535 0.90158 1.42621 1.01605 1.07030 1.85450 1.19702 0.84576 0.93609 1.39579 0.90283 1.25594 1.02012 0.95786 1.03808 1.69815 1.31097 1.03055 1.58284 0.85217 0.79791 0.76602 0.78185 1.20373 1.22508 1.20293 1.23328 0.95869 0.99111 0.99307 0.89508 0.92760 0.93439 0.87269 0.86217 0.73078 0.85475 0.82650 0.81862 0.82574 0.74738 0.92928 0.91479 0.91240 0.92521 0.79659 0.94146 0.91421 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.20 71.98 0.66 -1.13 16 2 C -0.14 -1.90 6.42 29.85 0.19 -1.71 16 3 C 0.51 10.93 7.55 87.66 0.66 11.59 16 4 O -0.56 -15.32 13.77 -3.03 -0.04 -15.37 16 5 N -0.66 -14.74 4.69 -302.95 -1.42 -16.16 16 6 C 0.18 4.20 6.25 38.60 0.24 4.44 16 7 C -0.15 -3.05 8.64 22.36 0.19 -2.86 16 8 C -0.07 -0.97 10.03 22.29 0.22 -0.74 16 9 C -0.14 -1.62 10.02 22.24 0.22 -1.39 16 10 C -0.06 -0.88 9.52 22.52 0.21 -0.66 16 11 C -0.19 -3.88 5.89 -19.99 -0.12 -4.00 16 12 C 0.56 13.28 7.75 86.69 0.67 13.95 16 13 O -0.58 -16.81 13.89 -4.00 -0.06 -16.86 16 14 N -0.70 -13.77 5.51 -466.27 -2.57 -16.34 16 15 C 0.14 3.20 5.51 86.38 0.48 3.68 16 16 C -0.10 -2.16 3.75 -10.27 -0.04 -2.20 16 17 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 18 C -0.15 -4.54 7.43 31.13 0.23 -4.31 16 19 C 0.14 5.15 4.48 45.52 0.20 5.36 16 20 H 0.08 2.82 8.10 -2.39 -0.02 2.80 16 21 N -0.73 -35.97 5.40 -320.43 -1.73 -37.71 16 22 C -0.24 -13.23 9.97 84.03 0.84 -12.39 16 23 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 24 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 25 N -0.97 -59.51 13.06 21.65 0.28 -59.22 16 26 Si 0.97 45.64 29.55 68.60 2.03 47.66 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 28 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 29 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 30 C -0.14 -3.97 7.39 31.12 0.23 -3.74 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 33 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 34 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.43 9.32 6.31 -92.71 -0.59 8.74 16 37 H 0.13 2.78 6.53 -2.91 -0.02 2.76 16 38 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 40 H 0.16 1.28 6.44 -2.91 -0.02 1.26 16 41 H 0.41 5.61 6.53 -92.71 -0.61 5.01 16 42 H 0.05 1.45 7.84 -2.39 -0.02 1.43 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.06 1.96 7.90 -2.39 -0.02 1.95 16 46 H 0.37 19.98 7.92 -92.71 -0.73 19.24 16 47 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 48 H 0.07 2.17 8.08 -2.38 -0.02 2.15 16 49 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -74.71 403.61 1.13 -73.58 By element: Atomic # 1 Polarization: 41.55 SS G_CDS: -0.93 Total: 40.61 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 5.57 Total: -0.21 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -5.44 Total: -129.43 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.10 Total: -32.23 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -74.71 1.13 -73.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086227700.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.941 kcal (2) G-P(sol) polarization free energy of solvation -74.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds