Wall clock time and date at job start Wed Apr 1 2020 05:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.40462 * 2 1 4 4 C 1.55243 * 110.32801 * 122.41328 * 2 1 3 5 5 C 1.54516 * 101.43930 * 155.44343 * 4 2 1 6 6 C 1.53703 * 103.64662 * 325.00873 * 5 4 2 7 7 N 1.47174 * 107.10730 * 21.54546 * 6 5 4 8 8 C 1.34782 * 125.66148 * 181.46666 * 7 6 5 9 9 O 1.21516 * 120.00068 * 180.02562 * 8 7 6 10 10 C 1.48150 * 119.99578 * 0.30439 * 8 7 6 11 11 C 1.39165 * 119.68935 * 179.45033 * 10 8 7 12 12 C 1.38739 * 119.19022 * 179.79020 * 11 10 8 13 13 C 1.38376 * 118.55633 * 0.47667 * 12 11 10 14 14 C 1.39248 * 119.30483 * 359.74163 * 13 12 11 15 15 O 1.35672 * 119.61499 * 179.97438 * 14 13 12 16 16 N 1.31929 * 120.76850 * 0.03179 * 14 13 12 17 17 C 1.52269 * 110.20647 * 83.41855 * 5 4 2 18 18 C 1.53323 * 109.42012 * 182.19911 * 17 5 4 19 19 N 1.46922 * 108.70498 * 306.49402 * 18 17 5 20 20 C 1.36939 * 120.56283 * 234.25247 * 19 18 17 21 21 H 1.08001 * 119.99969 * 27.91892 * 20 19 18 22 22 C 1.38815 * 120.00219 * 207.92079 * 20 19 18 23 23 N 1.31617 * 119.99972 * 17.44934 * 22 20 19 24 24 Si 1.86797 * 120.00045 * 197.45245 * 22 20 19 25 25 H 1.48493 * 109.47332 * 59.99584 * 24 22 20 26 26 H 1.48505 * 109.47070 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46913 * 299.99519 * 24 22 20 28 28 C 1.46938 * 118.87486 * 54.23792 * 19 18 17 29 29 C 1.52276 * 110.20823 * 206.60905 * 5 4 2 30 30 H 1.08993 * 109.47384 * 180.80845 * 1 2 3 31 31 H 1.09002 * 109.46666 * 300.81045 * 1 2 3 32 32 H 1.08998 * 109.47092 * 60.80021 * 1 2 3 33 33 H 1.08998 * 111.20362 * 37.34552 * 4 2 1 34 34 H 1.09004 * 110.94409 * 273.41935 * 4 2 1 35 35 H 1.09002 * 109.90776 * 262.18101 * 6 5 4 36 36 H 1.09000 * 109.90953 * 140.90981 * 6 5 4 37 37 H 1.08001 * 120.40517 * 359.97438 * 11 10 8 38 38 H 1.07998 * 120.72599 * 180.20065 * 12 11 10 39 39 H 1.07997 * 120.34959 * 179.76944 * 13 12 11 40 40 H 0.96693 * 114.00546 * 270.02504 * 15 14 13 41 41 H 1.09001 * 109.48325 * 302.18357 * 17 5 4 42 42 H 1.09001 * 109.48025 * 62.21899 * 17 5 4 43 43 H 1.08996 * 109.59695 * 186.72503 * 18 17 5 44 44 H 1.08997 * 109.59697 * 66.25929 * 18 17 5 45 45 H 0.96997 * 120.00751 * 180.02562 * 23 22 20 46 46 H 1.09006 * 109.59881 * 185.99212 * 28 19 18 47 47 H 1.08996 * 109.60042 * 65.51332 * 28 19 18 48 48 H 1.09000 * 109.48071 * 297.77241 * 29 5 4 49 49 H 1.08999 * 109.47789 * 57.80957 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9100 1.0216 0.0000 4 6 2.0693 -0.7803 1.2289 5 6 3.4674 -1.2092 0.7302 6 6 3.2521 -1.4750 -0.7683 7 7 2.0429 -0.7382 -1.1693 8 6 1.4980 -0.7339 -2.4021 9 8 0.4936 -0.0855 -2.6202 10 6 2.1200 -1.5247 -3.4895 11 6 1.5454 -1.5248 -4.7571 12 6 2.1390 -2.2655 -5.7689 13 6 3.2816 -2.9890 -5.4760 14 6 3.8017 -2.9485 -4.1849 15 8 4.9214 -3.6559 -3.8907 16 7 3.2176 -2.2312 -3.2443 17 6 4.4685 -0.0805 0.9365 18 6 5.8353 -0.5044 0.3861 19 7 6.2097 -1.7891 0.9927 20 6 7.4086 -1.9307 1.6392 21 1 7.8757 -1.0752 2.1042 22 6 8.0234 -3.1740 1.6969 23 7 7.6589 -4.1276 0.8663 24 14 9.3680 -3.4935 2.9536 25 1 8.8238 -3.2986 4.3214 26 1 9.8581 -4.8880 2.8104 27 1 10.4909 -2.5482 2.7283 28 6 5.2758 -2.9192 0.8943 29 6 3.9129 -2.4796 1.4417 30 1 -0.3634 -1.0275 0.0145 31 1 -0.3633 0.5264 0.8827 32 1 -0.3633 0.5013 -0.8971 33 1 1.4487 -1.6493 1.4475 34 1 2.1477 -0.1296 2.0999 35 1 3.1103 -2.5421 -0.9393 36 1 4.1107 -1.1163 -1.3360 37 1 0.6501 -0.9529 -4.9514 38 1 1.7160 -2.2808 -6.7625 39 1 3.7652 -3.5786 -6.2408 40 1 4.7485 -4.5563 -3.5835 41 1 4.1253 0.8105 0.4107 42 1 4.5569 0.1369 2.0010 43 1 6.5807 0.2499 0.6379 44 1 5.7751 -0.6151 -0.6966 45 1 8.0882 -4.9965 0.9067 46 1 5.6526 -3.7571 1.4811 47 1 5.1719 -3.2178 -0.1488 48 1 3.9957 -2.2872 2.5114 49 1 3.1805 -3.2684 1.2697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086913362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:33 Heat of formation + Delta-G solvation = -1.127020 kcal Electronic energy + Delta-G solvation = -32145.486846 eV Core-core repulsion = 28073.902674 eV Total energy + Delta-G solvation = -4071.584173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.00989 -40.00516 -38.42123 -36.91494 -35.89853 -33.28151 -32.90740 -31.53883 -30.84770 -30.30966 -29.83594 -27.18548 -25.78490 -24.79030 -24.04261 -23.40216 -22.46841 -21.73439 -20.72833 -19.61617 -18.65814 -18.04170 -17.29930 -16.66074 -16.41575 -16.08043 -15.92866 -15.46237 -14.90284 -14.71345 -14.36118 -14.11811 -13.79178 -13.64649 -13.45270 -13.21202 -13.07808 -12.90513 -12.68898 -12.45114 -12.34889 -12.03634 -11.77685 -11.75311 -11.63872 -11.43907 -11.19611 -11.03780 -10.84145 -10.67628 -10.36892 -10.22335 -10.16408 -10.14035 -9.99731 -9.81370 -9.46131 -9.28914 -9.19274 -9.12653 -8.41891 -8.38392 -6.58666 -5.73363 -3.14568 0.47756 0.97329 2.66540 2.96090 3.41067 3.45191 3.46506 3.48112 3.72911 4.27951 4.53302 4.54183 4.78809 4.80343 4.85008 4.87250 5.05489 5.20968 5.33095 5.36541 5.41336 5.44591 5.48638 5.65817 5.70442 5.74124 5.83643 5.87403 5.93051 6.04664 6.13547 6.21590 6.22592 6.23688 6.30067 6.33333 6.41252 6.59073 6.63647 6.68983 6.73645 6.84211 6.91910 7.07126 7.41181 7.43462 7.59756 7.68633 7.74252 7.84431 8.20107 8.50860 9.27492 9.91301 10.48448 11.34668 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011400 B = 0.004060 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.570261 B = 6894.204871 C = 8859.128752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 H 0.076 0.924 4 C -0.123 4.123 5 C -0.062 4.062 6 C 0.130 3.870 7 N -0.590 5.590 8 C 0.582 3.418 9 O -0.542 6.542 10 C 0.107 3.893 11 C -0.128 4.128 12 C -0.069 4.069 13 C -0.168 4.168 14 C 0.315 3.685 15 O -0.472 6.472 16 N -0.465 5.465 17 C -0.119 4.119 18 C 0.145 3.855 19 N -0.589 5.589 20 C -0.251 4.251 21 H 0.063 0.937 22 C 0.003 3.997 23 N -0.901 5.901 24 Si 0.899 3.101 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.284 1.284 28 C 0.172 3.828 29 C -0.125 4.125 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.405 0.595 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.020 0.980 45 H 0.253 0.747 46 H 0.086 0.914 47 H 0.022 0.978 48 H 0.058 0.942 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.181 2.415 -9.442 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.094 0.906 4 C -0.161 4.161 5 C -0.062 4.062 6 C 0.008 3.992 7 N -0.321 5.321 8 C 0.369 3.631 9 O -0.420 6.420 10 C -0.031 4.031 11 C -0.149 4.149 12 C -0.094 4.094 13 C -0.190 4.190 14 C 0.134 3.866 15 O -0.280 6.280 16 N -0.186 5.186 17 C -0.158 4.158 18 C 0.018 3.982 19 N -0.311 5.311 20 C -0.381 4.381 21 H 0.081 0.919 22 C -0.195 4.195 23 N -0.545 5.545 24 Si 0.729 3.271 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.210 1.210 28 C 0.046 3.954 29 C -0.164 4.164 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.168 0.832 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.263 0.737 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.104 0.896 47 H 0.040 0.960 48 H 0.077 0.923 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.956 3.069 -8.961 16.866 hybrid contribution 0.417 -0.798 -0.046 0.902 sum -13.539 2.271 -9.007 16.419 Atomic orbital electron populations 1.22174 0.94188 1.02463 1.03298 1.22052 0.94713 0.95609 0.84561 0.90576 1.23017 0.96757 0.99991 0.96381 1.21065 0.93713 0.97593 0.93867 1.22318 0.85930 0.96613 0.94342 1.48571 1.28321 1.46955 1.08277 1.17478 0.83329 0.81186 0.81082 1.90698 1.25049 1.44397 1.81879 1.20899 0.91892 0.96586 0.93757 1.22077 1.01431 0.99248 0.92151 1.21500 0.94201 0.94074 0.99674 1.22382 0.96852 1.01851 0.97895 1.19264 0.86348 0.92566 0.88407 1.84866 1.25473 1.30169 1.87452 1.67458 1.07883 1.06936 1.36369 1.21920 0.97054 0.95633 1.01192 1.20942 0.92862 0.89491 0.94871 1.43990 1.16951 1.06819 1.63371 1.19139 0.97307 0.95050 1.26567 0.91911 1.24992 0.98067 0.97993 0.98466 1.70029 1.44379 1.04311 1.35801 0.86420 0.81908 0.76960 0.81779 1.21146 1.21714 1.20987 1.20807 0.85110 0.91326 0.98164 1.22093 1.00242 0.94340 0.99756 0.92834 0.92200 0.89707 0.90816 0.90123 0.90610 0.89830 0.83246 0.83716 0.83760 0.73650 0.93303 0.92008 0.92978 0.96253 0.93745 0.89618 0.95997 0.92315 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 8.71 37.16 0.32 -1.75 16 2 C 0.13 1.84 3.45 -66.20 -0.23 1.61 16 3 H 0.08 1.04 7.74 -51.93 -0.40 0.64 16 4 C -0.12 -1.67 5.42 -24.75 -0.13 -1.81 16 5 C -0.06 -1.01 0.53 -154.09 -0.08 -1.09 16 6 C 0.13 2.17 3.58 -3.31 -0.01 2.16 16 7 N -0.59 -9.18 3.25 -164.05 -0.53 -9.72 16 8 C 0.58 9.22 7.62 -12.19 -0.09 9.13 16 9 O -0.54 -9.07 13.97 5.35 0.07 -9.00 16 10 C 0.11 1.55 6.72 -83.02 -0.56 0.99 16 11 C -0.13 -1.45 9.63 -39.05 -0.38 -1.83 16 12 C -0.07 -0.61 10.16 -39.35 -0.40 -1.01 16 13 C -0.17 -1.67 10.05 -39.16 -0.39 -2.06 16 14 C 0.32 4.20 7.74 -17.13 -0.13 4.07 16 15 O -0.47 -6.44 13.56 -18.72 -0.25 -6.69 16 16 N -0.46 -7.10 6.88 -9.87 -0.07 -7.17 16 17 C -0.12 -2.05 4.78 -26.94 -0.13 -2.18 16 18 C 0.14 3.05 6.22 -3.64 -0.02 3.03 16 19 N -0.59 -14.49 2.98 -172.16 -0.51 -15.01 16 20 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 21 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 22 C 0.00 0.09 4.90 -17.43 -0.09 0.01 16 23 N -0.90 -25.71 11.19 55.49 0.62 -25.09 16 24 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 C 0.17 3.96 5.05 -3.64 -0.02 3.94 16 29 C -0.12 -2.30 4.71 -26.94 -0.13 -2.42 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.20 5.89 -51.93 -0.31 0.90 16 33 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 34 H 0.08 1.00 8.01 -51.93 -0.42 0.58 16 35 H 0.08 1.34 6.83 -51.93 -0.35 0.99 16 36 H 0.08 1.59 5.50 -51.93 -0.29 1.31 16 37 H 0.15 1.52 7.63 -52.49 -0.40 1.12 16 38 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.40 3.72 9.06 45.56 0.41 4.13 16 41 H 0.05 0.77 7.47 -51.93 -0.39 0.38 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 44 H 0.02 0.43 6.53 -51.93 -0.34 0.09 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.09 2.24 6.02 -51.93 -0.31 1.93 16 47 H 0.02 0.53 7.47 -51.93 -0.39 0.15 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 378.57 15.07 5.70 5.70 Total: -1.00 -32.26 378.57 -9.12 -41.37 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.51 Total: 5.23 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -2.61 Total: 3.81 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.49 Total: -56.98 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.18 Total: -15.69 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.26 -9.12 -41.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086913362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.247 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds