Wall clock time and date at job start Wed Apr 1 2020 05:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.40462 * 2 1 4 4 C 1.55243 * 110.32801 * 122.41328 * 2 1 3 5 5 C 1.54516 * 101.43930 * 155.44343 * 4 2 1 6 6 C 1.53703 * 103.64662 * 325.00873 * 5 4 2 7 7 N 1.47174 * 107.10730 * 21.54546 * 6 5 4 8 8 C 1.34782 * 125.66148 * 181.46666 * 7 6 5 9 9 O 1.21516 * 120.00068 * 180.02562 * 8 7 6 10 10 C 1.48150 * 119.99578 * 0.30439 * 8 7 6 11 11 C 1.39165 * 119.68935 * 179.45033 * 10 8 7 12 12 C 1.38739 * 119.19022 * 179.79020 * 11 10 8 13 13 C 1.38376 * 118.55633 * 0.47667 * 12 11 10 14 14 C 1.39248 * 119.30483 * 359.74163 * 13 12 11 15 15 O 1.35672 * 119.61499 * 179.97438 * 14 13 12 16 16 N 1.31929 * 120.76850 * 0.03179 * 14 13 12 17 17 C 1.52269 * 110.20647 * 83.41855 * 5 4 2 18 18 C 1.53323 * 109.42012 * 182.19911 * 17 5 4 19 19 N 1.46922 * 108.70498 * 306.49402 * 18 17 5 20 20 C 1.36939 * 120.56283 * 234.25247 * 19 18 17 21 21 H 1.08001 * 119.99969 * 27.91892 * 20 19 18 22 22 C 1.38815 * 120.00219 * 207.92079 * 20 19 18 23 23 N 1.31617 * 119.99972 * 17.44934 * 22 20 19 24 24 Si 1.86797 * 120.00045 * 197.45245 * 22 20 19 25 25 H 1.48493 * 109.47332 * 59.99584 * 24 22 20 26 26 H 1.48505 * 109.47070 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46913 * 299.99519 * 24 22 20 28 28 C 1.46938 * 118.87486 * 54.23792 * 19 18 17 29 29 C 1.52276 * 110.20823 * 206.60905 * 5 4 2 30 30 H 1.08993 * 109.47384 * 180.80845 * 1 2 3 31 31 H 1.09002 * 109.46666 * 300.81045 * 1 2 3 32 32 H 1.08998 * 109.47092 * 60.80021 * 1 2 3 33 33 H 1.08998 * 111.20362 * 37.34552 * 4 2 1 34 34 H 1.09004 * 110.94409 * 273.41935 * 4 2 1 35 35 H 1.09002 * 109.90776 * 262.18101 * 6 5 4 36 36 H 1.09000 * 109.90953 * 140.90981 * 6 5 4 37 37 H 1.08001 * 120.40517 * 359.97438 * 11 10 8 38 38 H 1.07998 * 120.72599 * 180.20065 * 12 11 10 39 39 H 1.07997 * 120.34959 * 179.76944 * 13 12 11 40 40 H 0.96693 * 114.00546 * 270.02504 * 15 14 13 41 41 H 1.09001 * 109.48325 * 302.18357 * 17 5 4 42 42 H 1.09001 * 109.48025 * 62.21899 * 17 5 4 43 43 H 1.08996 * 109.59695 * 186.72503 * 18 17 5 44 44 H 1.08997 * 109.59697 * 66.25929 * 18 17 5 45 45 H 0.96997 * 120.00751 * 180.02562 * 23 22 20 46 46 H 1.09006 * 109.59881 * 185.99212 * 28 19 18 47 47 H 1.08996 * 109.60042 * 65.51332 * 28 19 18 48 48 H 1.09000 * 109.48071 * 297.77241 * 29 5 4 49 49 H 1.08999 * 109.47789 * 57.80957 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9100 1.0216 0.0000 4 6 2.0693 -0.7803 1.2289 5 6 3.4674 -1.2092 0.7302 6 6 3.2521 -1.4750 -0.7683 7 7 2.0429 -0.7382 -1.1693 8 6 1.4980 -0.7339 -2.4021 9 8 0.4936 -0.0855 -2.6202 10 6 2.1200 -1.5247 -3.4895 11 6 1.5454 -1.5248 -4.7571 12 6 2.1390 -2.2655 -5.7689 13 6 3.2816 -2.9890 -5.4760 14 6 3.8017 -2.9485 -4.1849 15 8 4.9214 -3.6559 -3.8907 16 7 3.2176 -2.2312 -3.2443 17 6 4.4685 -0.0805 0.9365 18 6 5.8353 -0.5044 0.3861 19 7 6.2097 -1.7891 0.9927 20 6 7.4086 -1.9307 1.6392 21 1 7.8757 -1.0752 2.1042 22 6 8.0234 -3.1740 1.6969 23 7 7.6589 -4.1276 0.8663 24 14 9.3680 -3.4935 2.9536 25 1 8.8238 -3.2986 4.3214 26 1 9.8581 -4.8880 2.8104 27 1 10.4909 -2.5482 2.7283 28 6 5.2758 -2.9192 0.8943 29 6 3.9129 -2.4796 1.4417 30 1 -0.3634 -1.0275 0.0145 31 1 -0.3633 0.5264 0.8827 32 1 -0.3633 0.5013 -0.8971 33 1 1.4487 -1.6493 1.4475 34 1 2.1477 -0.1296 2.0999 35 1 3.1103 -2.5421 -0.9393 36 1 4.1107 -1.1163 -1.3360 37 1 0.6501 -0.9529 -4.9514 38 1 1.7160 -2.2808 -6.7625 39 1 3.7652 -3.5786 -6.2408 40 1 4.7485 -4.5563 -3.5835 41 1 4.1253 0.8105 0.4107 42 1 4.5569 0.1369 2.0010 43 1 6.5807 0.2499 0.6379 44 1 5.7751 -0.6151 -0.6966 45 1 8.0882 -4.9965 0.9067 46 1 5.6526 -3.7571 1.4811 47 1 5.1719 -3.2178 -0.1488 48 1 3.9957 -2.2872 2.5114 49 1 3.1805 -3.2684 1.2697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086913362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:32 Heat of formation + Delta-G solvation = -23.401509 kcal Electronic energy + Delta-G solvation = -32146.452741 eV Core-core repulsion = 28073.902674 eV Total energy + Delta-G solvation = -4072.550067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.11261 -41.13524 -39.72554 -37.96179 -37.43753 -34.80493 -34.05143 -32.73117 -32.50363 -31.54147 -31.26885 -28.76034 -26.98174 -26.12698 -25.55201 -24.34259 -24.00975 -23.10324 -22.25654 -20.70966 -19.98799 -19.35104 -18.46268 -18.34840 -17.36594 -17.25939 -16.94080 -16.83257 -16.53910 -15.95051 -15.77361 -15.53960 -15.41098 -14.88433 -14.74794 -14.53902 -14.44250 -14.15652 -14.09784 -13.72661 -13.30232 -13.22869 -13.15169 -13.05213 -12.95619 -12.78212 -12.73982 -12.52726 -12.45373 -12.35858 -12.01010 -11.94681 -11.82945 -11.45517 -11.18104 -11.08236 -10.99752 -10.89028 -10.47011 -10.25141 -10.09404 -9.63042 -8.60213 -7.81920 -5.26622 -0.45759 0.11373 1.48602 1.50479 1.57184 1.59493 1.85397 2.49570 2.54517 2.73734 3.23314 3.30668 3.55386 3.65482 3.73891 3.83331 3.85549 3.93550 4.03178 4.14354 4.22363 4.31402 4.33622 4.48843 4.51287 4.59000 4.64869 4.73441 4.78903 4.81016 4.89957 4.93340 4.94139 4.97603 5.02880 5.09190 5.16342 5.22076 5.25175 5.34599 5.38519 5.42397 5.44840 5.55588 5.57616 5.69847 5.83487 6.39479 6.43943 6.50048 6.74075 7.05610 7.20469 7.91959 8.44247 9.23503 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011400 B = 0.004060 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.570261 B = 6894.204871 C = 8859.128752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 H 0.081 0.919 4 C -0.109 4.109 5 C -0.061 4.061 6 C 0.150 3.850 7 N -0.594 5.594 8 C 0.577 3.423 9 O -0.555 6.555 10 C 0.075 3.925 11 C -0.123 4.123 12 C -0.052 4.052 13 C -0.152 4.152 14 C 0.289 3.711 15 O -0.495 6.495 16 N -0.500 5.500 17 C -0.105 4.105 18 C 0.143 3.857 19 N -0.604 5.604 20 C -0.265 4.265 21 H 0.063 0.937 22 C -0.046 4.046 23 N -0.930 5.930 24 Si 0.963 3.037 25 H -0.278 1.278 26 H -0.294 1.294 27 H -0.279 1.279 28 C 0.183 3.817 29 C -0.110 4.110 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.161 0.839 38 H 0.192 0.808 39 H 0.176 0.824 40 H 0.417 0.583 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.003 0.997 45 H 0.249 0.751 46 H 0.051 0.949 47 H -0.003 1.003 48 H 0.060 0.940 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.819 3.231 -9.747 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.026 3.974 3 H 0.099 0.901 4 C -0.147 4.147 5 C -0.062 4.062 6 C 0.027 3.973 7 N -0.325 5.325 8 C 0.365 3.635 9 O -0.435 6.435 10 C -0.063 4.063 11 C -0.144 4.144 12 C -0.077 4.077 13 C -0.173 4.173 14 C 0.108 3.892 15 O -0.305 6.305 16 N -0.222 5.222 17 C -0.143 4.143 18 C 0.017 3.983 19 N -0.328 5.328 20 C -0.395 4.395 21 H 0.081 0.919 22 C -0.242 4.242 23 N -0.576 5.576 24 Si 0.791 3.209 25 H -0.204 1.204 26 H -0.220 1.220 27 H -0.205 1.205 28 C 0.057 3.943 29 C -0.150 4.150 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.179 0.821 38 H 0.209 0.791 39 H 0.193 0.807 40 H 0.277 0.723 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.021 0.979 45 H 0.058 0.942 46 H 0.070 0.930 47 H 0.015 0.985 48 H 0.079 0.921 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.618 3.908 -9.258 18.571 hybrid contribution 0.954 -1.062 -0.087 1.431 sum -14.663 2.846 -9.345 17.619 Atomic orbital electron populations 1.22074 0.93020 1.02291 1.03731 1.22230 0.95635 0.95624 0.83893 0.90105 1.22958 0.94132 1.00682 0.96921 1.20989 0.95460 0.96234 0.93506 1.21901 0.85567 0.95659 0.94131 1.48630 1.27903 1.47055 1.08960 1.17815 0.83180 0.81053 0.81433 1.90677 1.25561 1.45084 1.82190 1.20902 0.92645 0.97993 0.94724 1.22327 1.01509 0.99120 0.91460 1.21999 0.93036 0.91854 1.00857 1.22688 0.96650 1.01224 0.96724 1.19636 0.86727 0.93150 0.89695 1.84824 1.26621 1.31298 1.87731 1.67268 1.08796 1.08031 1.38138 1.21752 0.94636 0.96533 1.01429 1.21030 0.95217 0.88051 0.93967 1.44232 1.16760 1.08128 1.63643 1.19465 0.98225 0.95227 1.26575 0.91912 1.25721 1.00460 0.97868 1.00168 1.70189 1.45684 1.04435 1.37300 0.85412 0.79384 0.76438 0.79618 1.20392 1.22018 1.20462 1.20560 0.87295 0.90212 0.96241 1.21878 0.97575 0.95900 0.99624 0.93317 0.89579 0.91334 0.89963 0.87851 0.92199 0.92719 0.82094 0.79062 0.80661 0.72270 0.91300 0.91324 0.93271 0.97893 0.94209 0.93012 0.98539 0.92098 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.71 71.98 0.63 -2.93 16 2 C 0.13 3.30 3.45 45.57 0.16 3.45 16 3 H 0.08 2.02 7.74 -2.39 -0.02 2.01 16 4 C -0.11 -2.68 5.42 31.88 0.17 -2.51 16 5 C -0.06 -1.95 0.53 -51.91 -0.03 -1.98 16 6 C 0.15 5.14 3.58 86.49 0.31 5.45 16 7 N -0.59 -18.41 3.25 -791.21 -2.57 -20.98 16 8 C 0.58 18.35 7.62 86.88 0.66 19.01 16 9 O -0.56 -18.40 13.97 -3.77 -0.05 -18.45 16 10 C 0.07 2.18 6.72 41.85 0.28 2.46 16 11 C -0.12 -2.61 9.63 22.61 0.22 -2.39 16 12 C -0.05 -0.77 10.16 22.42 0.23 -0.54 16 13 C -0.15 -2.71 10.05 22.55 0.23 -2.48 16 14 C 0.29 7.85 7.74 84.92 0.66 8.51 16 15 O -0.50 -14.27 13.56 -89.90 -1.22 -15.49 16 16 N -0.50 -15.91 6.88 -298.19 -2.05 -17.96 16 17 C -0.10 -3.51 4.78 30.46 0.15 -3.37 16 18 C 0.14 6.17 6.22 86.41 0.54 6.71 16 19 N -0.60 -30.66 2.98 -698.58 -2.08 -32.74 16 20 C -0.26 -14.73 9.58 84.03 0.80 -13.93 16 21 H 0.06 3.42 7.89 -2.91 -0.02 3.40 16 22 C -0.05 -2.61 4.90 84.86 0.42 -2.19 16 23 N -0.93 -55.07 11.19 21.65 0.24 -54.83 16 24 Si 0.96 45.08 29.59 68.60 2.03 47.11 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 28 C 0.18 8.78 5.05 86.40 0.44 9.22 16 29 C -0.11 -4.06 4.71 30.46 0.14 -3.91 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.85 5.89 -2.39 -0.01 1.84 16 33 H 0.08 1.93 7.93 -2.39 -0.02 1.91 16 34 H 0.10 2.13 8.01 -2.38 -0.02 2.11 16 35 H 0.06 2.23 6.83 -2.39 -0.02 2.21 16 36 H 0.05 2.20 5.50 -2.39 -0.01 2.19 16 37 H 0.16 2.98 7.63 -2.91 -0.02 2.96 16 38 H 0.19 1.05 8.06 -2.91 -0.02 1.02 16 39 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.42 8.47 9.06 -74.06 -0.67 7.80 16 41 H 0.07 2.06 7.47 -2.39 -0.02 2.04 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 43 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 44 H 0.00 0.15 6.53 -2.39 -0.02 0.13 16 45 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 46 H 0.05 2.83 6.02 -2.38 -0.01 2.81 16 47 H 0.00 -0.18 7.47 -2.39 -0.02 -0.20 16 48 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.06 2.14 8.10 -2.39 -0.02 2.13 16 Total: -1.00 -73.33 378.57 0.60 -72.73 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.31 Total: 22.04 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 6.00 Total: 18.58 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -6.46 Total: -126.52 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -1.27 Total: -33.94 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -73.33 0.60 -72.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086913362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.328 kcal (2) G-P(sol) polarization free energy of solvation -73.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds