Wall clock time and date at job start Wed Apr 1 2020 04:57:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.50699 * 109.47122 * 2 1
4 4 O 1.21270 * 119.99696 * 0.02562 * 3 2 1
5 5 N 1.34779 * 119.99660 * 180.02562 * 3 2 1
6 6 C 1.39282 * 119.99602 * 185.27923 * 5 3 2
7 7 C 1.38847 * 120.16767 * 34.93465 * 6 5 3
8 8 C 1.38024 * 120.06888 * 179.72488 * 7 6 5
9 9 C 1.38564 * 120.40954 * 0.24857 * 8 7 6
10 10 C 1.37803 * 120.32577 * 0.03110 * 9 8 7
11 11 C 1.39684 * 119.92182 * 359.97056 * 10 9 8
12 12 C 1.47519 * 120.19722 * 179.97438 * 11 10 9
13 13 O 1.21595 * 119.99775 * 175.02012 * 12 11 10
14 14 N 1.34773 * 120.00180 * 355.02504 * 12 11 10
15 15 C 1.46498 * 120.00225 * 180.02562 * 14 12 11
16 16 H 1.09000 * 110.63924 * 328.13786 * 15 14 12
17 17 C 1.55164 * 110.72045 * 91.47331 * 15 14 12
18 18 C 1.54911 * 101.58039 * 153.86382 * 17 15 14
19 19 N 1.47418 * 104.83415 * 322.99364 * 18 17 15
20 20 C 1.36942 * 125.64979 * 204.16596 * 19 18 17
21 21 H 1.08002 * 120.00209 * 179.97438 * 20 19 18
22 22 C 1.38814 * 119.99596 * 359.95199 * 20 19 18
23 23 N 1.31617 * 120.00040 * 0.02562 * 22 20 19
24 24 Si 1.86802 * 119.99461 * 180.02562 * 22 20 19
25 25 H 1.48507 * 109.47154 * 90.00488 * 24 22 20
26 26 H 1.48503 * 109.46667 * 209.99735 * 24 22 20
27 27 H 1.48487 * 109.47345 * 329.99823 * 24 22 20
28 28 C 1.47026 * 108.70420 * 24.12543 * 19 18 17
29 29 H 1.09002 * 109.88360 * 239.52141 * 28 19 18
30 30 C 1.53000 * 109.88127 * 118.35886 * 28 19 18
31 31 H 1.09000 * 109.46773 * 299.99739 * 1 2 3
32 32 H 1.09004 * 109.47380 * 59.99569 * 1 2 3
33 33 H 1.09001 * 109.47080 * 179.97438 * 1 2 3
34 34 H 1.09000 * 109.46773 * 240.00261 * 2 1 3
35 35 H 1.08994 * 109.47254 * 120.00531 * 2 1 3
36 36 H 0.96999 * 119.99795 * 5.27721 * 5 3 2
37 37 H 1.08004 * 119.96870 * 359.97438 * 7 6 5
38 38 H 1.08011 * 119.79492 * 180.23420 * 8 7 6
39 39 H 1.07997 * 119.83528 * 179.97438 * 9 8 7
40 40 H 1.07996 * 120.03627 * 179.97438 * 10 9 8
41 41 H 0.97008 * 119.99833 * 359.97438 * 14 12 11
42 42 H 1.08997 * 111.00316 * 271.94139 * 17 15 14
43 43 H 1.08999 * 111.00074 * 35.79191 * 17 15 14
44 44 H 1.09000 * 110.36931 * 204.14944 * 18 17 15
45 45 H 1.09004 * 110.45603 * 81.87549 * 18 17 15
46 46 H 0.96996 * 119.99446 * 180.02562 * 23 22 20
47 47 H 1.09000 * 109.47771 * 302.19409 * 30 28 19
48 48 H 1.09007 * 109.46912 * 62.19538 * 30 28 19
49 49 H 1.09003 * 109.46969 * 182.18960 * 30 28 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 8 1.2442 2.3425 0.0005
5 7 3.3574 1.6670 -0.0005
6 6 3.8227 2.9751 0.1105
7 6 3.1402 3.8941 0.8962
8 6 3.6062 5.1884 1.0093
9 6 4.7525 5.5823 0.3379
10 6 5.4396 4.6854 -0.4510
11 6 4.9802 3.3721 -0.5753
12 6 5.7107 2.4071 -1.4187
13 8 5.3609 1.2431 -1.4531
14 7 6.7659 2.8157 -2.1509
15 6 7.4910 1.8575 -2.9889
16 1 7.4743 0.8645 -2.5396
17 6 6.9001 1.8253 -4.4232
18 6 8.1225 1.3595 -5.2528
19 7 9.2805 2.0174 -4.6206
20 6 10.4731 2.2955 -5.2334
21 1 11.2632 2.7829 -4.6814
22 6 10.6668 1.9505 -6.5640
23 7 9.7040 1.3566 -7.2367
24 14 12.2940 2.3293 -7.3996
25 1 13.2191 1.1807 -7.2254
26 1 12.0638 2.5642 -8.8478
27 1 12.8925 3.5439 -6.7902
28 6 8.9424 2.3263 -3.2235
29 1 9.0174 3.4002 -3.0527
30 6 9.8891 1.5794 -2.2818
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 0.5139 -0.8900
33 1 -0.3633 -1.0277 -0.0005
34 1 1.8933 -0.5138 -0.8900
35 1 1.8933 -0.5139 0.8899
36 1 3.9870 0.9332 -0.0782
37 1 2.2459 3.5949 1.4228
38 1 3.0739 5.8986 1.6248
39 1 5.1087 6.5974 0.4326
40 1 6.3323 4.9975 -0.9726
41 1 7.0448 3.7444 -2.1236
42 1 6.0836 1.1066 -4.4933
43 1 6.5727 2.8177 -4.7332
44 1 8.0225 1.6815 -6.2894
45 1 8.2273 0.2758 -5.2014
46 1 9.8396 1.1152 -8.1663
47 1 9.8218 0.5084 -2.4730
48 1 10.9118 1.9155 -2.4531
49 1 9.6083 1.7823 -1.2483
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001088930622.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:57:05
Heat of formation + Delta-G solvation = -17.993269 kcal
Electronic energy + Delta-G solvation = -30381.522571 eV
Core-core repulsion = 26309.207023 eV
Total energy + Delta-G solvation = -4072.315548 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-41.07480 -39.70038 -38.44750 -37.44181 -35.11544 -34.01899 -33.10612 -32.31967
-31.17675 -30.38873 -29.84797 -28.57190 -25.45547 -24.81328 -24.05101 -23.66727
-22.40245 -20.91193 -20.44021 -20.07029 -19.77217 -17.96830 -17.49149 -17.20427
-16.83478 -16.24577 -15.89295 -15.21391 -15.01323 -14.84122 -14.78197 -14.56488
-14.04160 -13.94394 -13.81184 -13.47604 -13.31974 -12.86578 -12.76042 -12.59653
-12.25948 -12.18079 -12.04183 -12.00628 -11.77546 -11.59560 -11.43164 -11.18525
-10.90064 -10.87481 -10.68900 -10.60379 -10.46490 -10.13319 -10.10847 -9.81332
-9.72469 -9.59056 -9.22988 -8.75108 -8.67318 -8.32266 -6.91823 -5.69201
-3.12296 0.64070 1.08166 2.39763 2.81929 2.93934 3.22432 3.37127
3.42341 3.44150 3.71867 4.42112 4.44551 4.57183 4.59185 4.78286
4.79796 4.83222 5.10871 5.16682 5.21395 5.24421 5.37688 5.38055
5.49274 5.53454 5.57193 5.64582 5.66152 5.76554 5.93217 5.94882
6.01729 6.07163 6.18125 6.21879 6.25171 6.26840 6.29282 6.46906
6.54728 6.66168 6.71737 6.81330 7.04510 7.25990 7.47058 7.58579
7.61957 7.81300 7.92183 8.25209 8.31723 9.16702 9.77603 10.41059
11.34127
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.016616 B = 0.002457 C = 0.002250
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1684.720811 B =11392.584419 C =12443.967931
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.144 4.144
3 C 0.512 3.488
4 O -0.527 6.527
5 N -0.662 5.662
6 C 0.209 3.791
7 C -0.135 4.135
8 C -0.076 4.076
9 C -0.145 4.145
10 C -0.066 4.066
11 C -0.167 4.167
12 C 0.564 3.436
13 O -0.551 6.551
14 N -0.705 5.705
15 C 0.134 3.866
16 H 0.096 0.904
17 C -0.153 4.153
18 C 0.153 3.847
19 N -0.595 5.595
20 C -0.221 4.221
21 H 0.078 0.922
22 C -0.010 4.010
23 N -0.921 5.921
24 Si 0.914 3.086
25 H -0.289 1.289
26 H -0.290 1.290
27 H -0.281 1.281
28 C 0.155 3.845
29 H 0.035 0.965
30 C -0.155 4.155
31 H 0.061 0.939
32 H 0.062 0.938
33 H 0.063 0.937
34 H 0.100 0.900
35 H 0.097 0.903
36 H 0.426 0.574
37 H 0.138 0.862
38 H 0.129 0.871
39 H 0.130 0.870
40 H 0.131 0.869
41 H 0.398 0.602
42 H 0.061 0.939
43 H 0.062 0.938
44 H 0.109 0.891
45 H 0.015 0.985
46 H 0.253 0.747
47 H 0.052 0.948
48 H 0.054 0.946
49 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.783 3.157 17.939 22.842
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.184 4.184
3 C 0.301 3.699
4 O -0.403 6.403
5 N -0.312 5.312
6 C 0.112 3.888
7 C -0.155 4.155
8 C -0.095 4.095
9 C -0.164 4.164
10 C -0.085 4.085
11 C -0.172 4.172
12 C 0.353 3.647
13 O -0.431 6.431
14 N -0.354 5.354
15 C 0.030 3.970
16 H 0.114 0.886
17 C -0.192 4.192
18 C 0.028 3.972
19 N -0.320 5.320
20 C -0.349 4.349
21 H 0.096 0.904
22 C -0.206 4.206
23 N -0.569 5.569
24 Si 0.745 3.255
25 H -0.216 1.216
26 H -0.217 1.217
27 H -0.207 1.207
28 C 0.047 3.953
29 H 0.053 0.947
30 C -0.215 4.215
31 H 0.080 0.920
32 H 0.081 0.919
33 H 0.082 0.918
34 H 0.118 0.882
35 H 0.115 0.885
36 H 0.270 0.730
37 H 0.156 0.844
38 H 0.147 0.853
39 H 0.148 0.852
40 H 0.149 0.851
41 H 0.234 0.766
42 H 0.080 0.920
43 H 0.080 0.920
44 H 0.127 0.873
45 H 0.033 0.967
46 H 0.063 0.937
47 H 0.071 0.929
48 H 0.073 0.927
49 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges -14.474 2.845 17.659 23.009
hybrid contribution 1.443 0.273 -0.518 1.558
sum -13.031 3.118 17.140 21.756
Atomic orbital electron populations
1.21540 0.92736 1.01807 1.03346 1.21641 0.98704 0.92967 1.05051
1.21062 0.81565 0.92463 0.74858 1.90698 1.55284 1.46452 1.47895
1.43950 1.08526 1.07818 1.70945 1.17677 0.92599 0.85446 0.93097
1.21113 1.01332 0.93556 0.99503 1.21211 0.95265 0.95427 0.97550
1.21059 0.96314 1.00010 0.99013 1.21191 0.98986 0.91422 0.96885
1.19846 0.99492 0.95170 1.02714 1.18022 0.80094 0.87345 0.79287
1.90554 1.67087 1.18733 1.66722 1.45963 1.30775 1.13279 1.45412
1.22221 0.91603 0.92518 0.90665 0.88596 1.23404 0.99874 1.01192
0.94775 1.21949 0.81912 0.94513 0.98833 1.44484 1.13316 1.69433
1.04765 1.19018 0.90025 1.32541 0.93349 0.90442 1.24792 0.98206
1.00815 0.96743 1.69790 1.31178 1.46302 1.09617 0.86080 0.82765
0.77868 0.78808 1.21628 1.21658 1.20711 1.20996 0.90429 0.96558
0.87351 0.94701 1.22240 1.00690 1.01150 0.97373 0.92012 0.91871
0.91838 0.88216 0.88516 0.72961 0.84447 0.85301 0.85240 0.85097
0.76590 0.92001 0.91960 0.87311 0.96726 0.93660 0.92894 0.92674
0.94343
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.07 9.20 37.16 0.34 -0.73 16
2 C -0.14 -1.17 6.42 -27.88 -0.18 -1.35 16
3 C 0.51 6.03 7.55 -10.98 -0.08 5.95 16
4 O -0.53 -7.62 13.77 5.57 0.08 -7.54 16
5 N -0.66 -8.03 4.68 -9.69 -0.05 -8.07 16
6 C 0.21 2.66 6.25 -83.48 -0.52 2.14 16
7 C -0.13 -1.54 8.64 -39.43 -0.34 -1.88 16
8 C -0.08 -0.70 10.03 -39.54 -0.40 -1.09 16
9 C -0.15 -1.28 10.02 -39.62 -0.40 -1.67 16
10 C -0.07 -0.66 9.52 -39.20 -0.37 -1.04 16
11 C -0.17 -2.10 5.89 -104.81 -0.62 -2.72 16
12 C 0.56 8.26 7.75 -12.48 -0.10 8.16 16
13 O -0.55 -9.12 13.54 5.28 0.07 -9.05 16
14 N -0.71 -10.08 5.13 -53.07 -0.27 -10.35 16
15 C 0.13 2.35 2.85 -66.10 -0.19 2.16 16
16 H 0.10 1.78 7.25 -51.93 -0.38 1.40 16
17 C -0.15 -2.97 6.77 -24.58 -0.17 -3.13 16
18 C 0.15 3.65 5.89 -2.53 -0.01 3.64 16
19 N -0.59 -14.46 3.13 -162.57 -0.51 -14.97 16
20 C -0.22 -5.90 9.89 -15.06 -0.15 -6.05 16
21 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16
22 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16
23 N -0.92 -26.30 10.09 55.49 0.56 -25.74 16
24 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16
25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
27 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16
28 C 0.15 3.00 3.48 -66.95 -0.23 2.77 16
29 H 0.04 0.66 7.72 -51.93 -0.40 0.26 16
30 C -0.15 -2.78 9.13 37.16 0.34 -2.44 16
31 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16
32 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16
33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16
35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16
36 H 0.43 5.06 6.33 -40.82 -0.26 4.80 16
37 H 0.14 1.59 6.53 -52.48 -0.34 1.25 16
38 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16
39 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16
40 H 0.13 1.06 6.44 -52.49 -0.34 0.72 16
41 H 0.40 4.80 6.42 -40.82 -0.26 4.54 16
42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16
43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
44 H 0.11 2.93 5.87 -51.93 -0.30 2.62 16
45 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16
46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16
47 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
48 H 0.05 1.02 8.05 -51.92 -0.42 0.60 16
49 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
LS Contribution 394.17 15.07 5.94 5.94
Total: -1.00 -32.06 394.17 -9.69 -41.74
By element:
Atomic # 1 Polarization: 16.42 SS G_CDS: -7.32 Total: 9.10 kcal
Atomic # 6 Polarization: 5.52 SS G_CDS: -3.17 Total: 2.35 kcal
Atomic # 7 Polarization: -58.86 SS G_CDS: -0.27 Total: -59.13 kcal
Atomic # 8 Polarization: -16.74 SS G_CDS: 0.15 Total: -16.59 kcal
Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -32.06 -9.69 -41.74 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001088930622.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.752 kcal
(2) G-P(sol) polarization free energy of solvation -32.056 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.305 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.993 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds