Wall clock time and date at job start Wed Apr 1 2020 04:57:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.50699 * 109.47122 * 2 1
4 4 O 1.21270 * 119.99696 * 0.02562 * 3 2 1
5 5 N 1.34779 * 119.99660 * 180.02562 * 3 2 1
6 6 C 1.39282 * 119.99602 * 185.27923 * 5 3 2
7 7 C 1.38847 * 120.16767 * 34.93465 * 6 5 3
8 8 C 1.38024 * 120.06888 * 179.72488 * 7 6 5
9 9 C 1.38564 * 120.40954 * 0.24857 * 8 7 6
10 10 C 1.37803 * 120.32577 * 0.03110 * 9 8 7
11 11 C 1.39684 * 119.92182 * 359.97056 * 10 9 8
12 12 C 1.47519 * 120.19722 * 179.97438 * 11 10 9
13 13 O 1.21595 * 119.99775 * 175.02012 * 12 11 10
14 14 N 1.34773 * 120.00180 * 355.02504 * 12 11 10
15 15 C 1.46498 * 120.00225 * 180.02562 * 14 12 11
16 16 H 1.09000 * 110.63924 * 328.13786 * 15 14 12
17 17 C 1.55164 * 110.72045 * 91.47331 * 15 14 12
18 18 C 1.54911 * 101.58039 * 153.86382 * 17 15 14
19 19 N 1.47418 * 104.83415 * 322.99364 * 18 17 15
20 20 C 1.36942 * 125.64979 * 204.16596 * 19 18 17
21 21 H 1.08002 * 120.00209 * 179.97438 * 20 19 18
22 22 C 1.38814 * 119.99596 * 359.95199 * 20 19 18
23 23 N 1.31617 * 120.00040 * 0.02562 * 22 20 19
24 24 Si 1.86802 * 119.99461 * 180.02562 * 22 20 19
25 25 H 1.48507 * 109.47154 * 90.00488 * 24 22 20
26 26 H 1.48503 * 109.46667 * 209.99735 * 24 22 20
27 27 H 1.48487 * 109.47345 * 329.99823 * 24 22 20
28 28 C 1.47026 * 108.70420 * 24.12543 * 19 18 17
29 29 H 1.09002 * 109.88360 * 239.52141 * 28 19 18
30 30 C 1.53000 * 109.88127 * 118.35886 * 28 19 18
31 31 H 1.09000 * 109.46773 * 299.99739 * 1 2 3
32 32 H 1.09004 * 109.47380 * 59.99569 * 1 2 3
33 33 H 1.09001 * 109.47080 * 179.97438 * 1 2 3
34 34 H 1.09000 * 109.46773 * 240.00261 * 2 1 3
35 35 H 1.08994 * 109.47254 * 120.00531 * 2 1 3
36 36 H 0.96999 * 119.99795 * 5.27721 * 5 3 2
37 37 H 1.08004 * 119.96870 * 359.97438 * 7 6 5
38 38 H 1.08011 * 119.79492 * 180.23420 * 8 7 6
39 39 H 1.07997 * 119.83528 * 179.97438 * 9 8 7
40 40 H 1.07996 * 120.03627 * 179.97438 * 10 9 8
41 41 H 0.97008 * 119.99833 * 359.97438 * 14 12 11
42 42 H 1.08997 * 111.00316 * 271.94139 * 17 15 14
43 43 H 1.08999 * 111.00074 * 35.79191 * 17 15 14
44 44 H 1.09000 * 110.36931 * 204.14944 * 18 17 15
45 45 H 1.09004 * 110.45603 * 81.87549 * 18 17 15
46 46 H 0.96996 * 119.99446 * 180.02562 * 23 22 20
47 47 H 1.09000 * 109.47771 * 302.19409 * 30 28 19
48 48 H 1.09007 * 109.46912 * 62.19538 * 30 28 19
49 49 H 1.09003 * 109.46969 * 182.18960 * 30 28 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 8 1.2442 2.3425 0.0005
5 7 3.3574 1.6670 -0.0005
6 6 3.8227 2.9751 0.1105
7 6 3.1402 3.8941 0.8962
8 6 3.6062 5.1884 1.0093
9 6 4.7525 5.5823 0.3379
10 6 5.4396 4.6854 -0.4510
11 6 4.9802 3.3721 -0.5753
12 6 5.7107 2.4071 -1.4187
13 8 5.3609 1.2431 -1.4531
14 7 6.7659 2.8157 -2.1509
15 6 7.4910 1.8575 -2.9889
16 1 7.4743 0.8645 -2.5396
17 6 6.9001 1.8253 -4.4232
18 6 8.1225 1.3595 -5.2528
19 7 9.2805 2.0174 -4.6206
20 6 10.4731 2.2955 -5.2334
21 1 11.2632 2.7829 -4.6814
22 6 10.6668 1.9505 -6.5640
23 7 9.7040 1.3566 -7.2367
24 14 12.2940 2.3293 -7.3996
25 1 13.2191 1.1807 -7.2254
26 1 12.0638 2.5642 -8.8478
27 1 12.8925 3.5439 -6.7902
28 6 8.9424 2.3263 -3.2235
29 1 9.0174 3.4002 -3.0527
30 6 9.8891 1.5794 -2.2818
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 0.5139 -0.8900
33 1 -0.3633 -1.0277 -0.0005
34 1 1.8933 -0.5138 -0.8900
35 1 1.8933 -0.5139 0.8899
36 1 3.9870 0.9332 -0.0782
37 1 2.2459 3.5949 1.4228
38 1 3.0739 5.8986 1.6248
39 1 5.1087 6.5974 0.4326
40 1 6.3323 4.9975 -0.9726
41 1 7.0448 3.7444 -2.1236
42 1 6.0836 1.1066 -4.4933
43 1 6.5727 2.8177 -4.7332
44 1 8.0225 1.6815 -6.2894
45 1 8.2273 0.2758 -5.2014
46 1 9.8396 1.1152 -8.1663
47 1 9.8218 0.5084 -2.4730
48 1 10.9118 1.9155 -2.4531
49 1 9.6083 1.7823 -1.2483
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001088930622.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:57:04
Heat of formation + Delta-G solvation = -37.611043 kcal
Electronic energy + Delta-G solvation = -30382.373261 eV
Core-core repulsion = 26309.207023 eV
Total energy + Delta-G solvation = -4073.166239 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-42.01461 -40.83607 -39.58393 -38.75863 -36.14908 -35.38271 -33.98951 -33.78724
-32.31882 -31.96835 -30.66944 -30.27177 -26.79631 -25.91333 -25.69134 -24.67998
-23.26804 -22.21568 -21.79440 -21.32811 -21.06048 -18.98859 -18.72065 -18.35315
-18.10461 -17.49621 -16.91059 -16.62490 -16.12868 -15.99856 -15.86623 -15.72130
-15.50344 -15.22721 -14.86185 -14.59903 -14.38654 -14.21275 -13.99618 -13.80960
-13.53634 -13.24395 -13.23096 -13.02173 -12.92965 -12.75610 -12.70673 -12.59836
-12.50148 -12.24697 -12.11261 -12.07462 -11.97815 -11.57603 -11.53650 -11.44459
-11.08080 -10.79737 -10.72413 -10.20019 -9.90932 -9.18909 -8.89433 -7.74338
-5.19197 -0.22919 0.28898 1.49035 1.50208 1.53639 1.58669 1.81107
2.03575 2.09891 2.52539 2.85536 3.36397 3.51557 3.64986 3.71612
3.78639 3.87285 3.95088 4.10020 4.15460 4.20635 4.21207 4.38164
4.42030 4.44892 4.49854 4.62252 4.65849 4.70155 4.80533 4.87474
4.94192 4.96256 5.02028 5.04518 5.10634 5.14738 5.27034 5.31208
5.35278 5.45600 5.49135 5.50719 5.59799 5.60615 5.80685 5.93211
6.31124 6.35392 6.50762 7.01025 7.11805 7.16660 7.79686 8.42895
9.27547
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.016616 B = 0.002457 C = 0.002250
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1684.720811 B =11392.584419 C =12443.967931
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.140 4.140
3 C 0.505 3.495
4 O -0.560 6.560
5 N -0.664 5.664
6 C 0.187 3.813
7 C -0.149 4.149
8 C -0.068 4.068
9 C -0.139 4.139
10 C -0.064 4.064
11 C -0.185 4.185
12 C 0.564 3.436
13 O -0.575 6.575
14 N -0.696 5.696
15 C 0.154 3.846
16 H 0.087 0.913
17 C -0.139 4.139
18 C 0.158 3.842
19 N -0.613 5.613
20 C -0.225 4.225
21 H 0.086 0.914
22 C -0.070 4.070
23 N -0.951 5.951
24 Si 0.977 3.023
25 H -0.290 1.290
26 H -0.297 1.297
27 H -0.266 1.266
28 C 0.150 3.850
29 H 0.052 0.948
30 C -0.146 4.146
31 H 0.055 0.945
32 H 0.045 0.955
33 H 0.086 0.914
34 H 0.107 0.893
35 H 0.122 0.878
36 H 0.426 0.574
37 H 0.129 0.871
38 H 0.158 0.842
39 H 0.164 0.836
40 H 0.153 0.847
41 H 0.412 0.588
42 H 0.065 0.935
43 H 0.067 0.933
44 H 0.076 0.924
45 H -0.014 1.014
46 H 0.245 0.755
47 H 0.036 0.964
48 H 0.047 0.953
49 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.480 4.983 20.036 24.657
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.179 4.179
3 C 0.296 3.704
4 O -0.438 6.438
5 N -0.313 5.313
6 C 0.089 3.911
7 C -0.170 4.170
8 C -0.086 4.086
9 C -0.157 4.157
10 C -0.083 4.083
11 C -0.190 4.190
12 C 0.354 3.646
13 O -0.456 6.456
14 N -0.347 5.347
15 C 0.048 3.952
16 H 0.105 0.895
17 C -0.179 4.179
18 C 0.033 3.967
19 N -0.339 5.339
20 C -0.354 4.354
21 H 0.104 0.896
22 C -0.262 4.262
23 N -0.601 5.601
24 Si 0.806 3.194
25 H -0.218 1.218
26 H -0.224 1.224
27 H -0.191 1.191
28 C 0.043 3.957
29 H 0.070 0.930
30 C -0.205 4.205
31 H 0.074 0.926
32 H 0.064 0.936
33 H 0.105 0.895
34 H 0.125 0.875
35 H 0.140 0.860
36 H 0.270 0.730
37 H 0.147 0.853
38 H 0.175 0.825
39 H 0.181 0.819
40 H 0.170 0.830
41 H 0.250 0.750
42 H 0.084 0.916
43 H 0.086 0.914
44 H 0.094 0.906
45 H 0.004 0.996
46 H 0.055 0.945
47 H 0.055 0.945
48 H 0.066 0.934
49 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -14.163 4.704 19.808 24.801
hybrid contribution 1.303 -0.243 -1.079 1.709
sum -12.860 4.461 18.729 23.153
Atomic orbital electron populations
1.21536 0.92535 1.02940 1.02180 1.21728 0.98785 0.90836 1.06565
1.21730 0.81209 0.93608 0.73896 1.90670 1.55891 1.47732 1.49556
1.44018 1.08668 1.07885 1.70734 1.17984 0.93210 0.85969 0.93923
1.21190 1.01324 0.94565 0.99900 1.21608 0.95240 0.94826 0.96958
1.21457 0.95487 1.01213 0.97543 1.21507 0.99599 0.90413 0.96753
1.19746 0.99848 0.95893 1.03551 1.18367 0.79753 0.87434 0.79055
1.90544 1.67651 1.19960 1.67469 1.45710 1.30638 1.13373 1.44936
1.21768 0.90630 0.92926 0.89827 0.89474 1.23201 0.97979 1.01250
0.95438 1.21651 0.84101 0.92865 0.98119 1.44716 1.12816 1.69303
1.07025 1.19393 0.90976 1.31457 0.93556 0.89605 1.25603 1.01318
1.01573 0.97675 1.70042 1.32902 1.47841 1.09354 0.85088 0.79120
0.77948 0.77242 1.21763 1.22407 1.19115 1.21209 0.91711 0.97624
0.85112 0.92990 1.22121 0.99838 0.99759 0.98822 0.92607 0.93617
0.89486 0.87462 0.85987 0.73036 0.85295 0.82466 0.81867 0.82980
0.74987 0.91606 0.91438 0.90616 0.99586 0.94496 0.94495 0.93373
0.91049
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.03 9.20 71.98 0.66 -1.37 16
2 C -0.14 -2.17 6.42 29.85 0.19 -1.98 16
3 C 0.51 11.95 7.55 87.66 0.66 12.61 16
4 O -0.56 -16.49 13.77 -3.00 -0.04 -16.53 16
5 N -0.66 -16.06 4.68 -302.96 -1.42 -17.48 16
6 C 0.19 4.62 6.25 38.60 0.24 4.86 16
7 C -0.15 -3.25 8.64 22.36 0.19 -3.06 16
8 C -0.07 -1.05 10.03 22.30 0.22 -0.83 16
9 C -0.14 -1.90 10.02 22.24 0.22 -1.68 16
10 C -0.06 -1.09 9.52 22.52 0.21 -0.87 16
11 C -0.18 -4.36 5.89 -19.99 -0.12 -4.48 16
12 C 0.56 15.75 7.75 86.69 0.67 16.42 16
13 O -0.57 -18.74 13.54 -4.01 -0.05 -18.79 16
14 N -0.70 -18.46 5.13 -440.09 -2.26 -20.72 16
15 C 0.15 5.22 2.85 46.18 0.13 5.35 16
16 H 0.09 3.17 7.25 -2.39 -0.02 3.15 16
17 C -0.14 -5.39 6.77 31.99 0.22 -5.17 16
18 C 0.16 7.79 5.89 86.86 0.51 8.30 16
19 N -0.61 -29.90 3.13 -668.26 -2.09 -31.99 16
20 C -0.22 -11.98 9.89 84.03 0.83 -11.15 16
21 H 0.09 4.33 7.83 -2.91 -0.02 4.30 16
22 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16
23 N -0.95 -56.11 10.09 21.65 0.22 -55.89 16
24 Si 0.98 44.74 29.55 68.60 2.03 46.77 16
25 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16
26 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16
27 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16
28 C 0.15 5.61 3.48 45.34 0.16 5.77 16
29 H 0.05 1.81 7.72 -2.39 -0.02 1.79 16
30 C -0.15 -4.99 9.13 71.98 0.66 -4.33 16
31 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16
32 H 0.04 0.84 8.10 -2.38 -0.02 0.82 16
33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16
34 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16
35 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16
36 H 0.43 10.12 6.33 -92.71 -0.59 9.53 16
37 H 0.13 2.98 6.53 -2.91 -0.02 2.96 16
38 H 0.16 1.49 8.06 -2.90 -0.02 1.47 16
39 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16
40 H 0.15 1.85 6.44 -2.91 -0.02 1.84 16
41 H 0.41 8.67 6.42 -92.70 -0.60 8.07 16
42 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16
43 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16
44 H 0.08 4.26 5.87 -2.39 -0.01 4.24 16
45 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16
46 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16
47 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16
48 H 0.05 1.70 8.05 -2.38 -0.02 1.68 16
49 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
Total: -1.00 -71.89 394.17 2.32 -69.57
By element:
Atomic # 1 Polarization: 30.25 SS G_CDS: -0.20 Total: 30.04 kcal
Atomic # 6 Polarization: 8.89 SS G_CDS: 6.14 Total: 15.02 kcal
Atomic # 7 Polarization: -120.54 SS G_CDS: -5.54 Total: -126.09 kcal
Atomic # 8 Polarization: -35.23 SS G_CDS: -0.10 Total: -35.32 kcal
Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal
Total: -71.89 2.32 -69.57 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001088930622.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.958 kcal
(2) G-P(sol) polarization free energy of solvation -71.891 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.933 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.569 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.611 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds