Wall clock time and date at job start Wed Apr 1 2020 04:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46984 * 2 1 4 4 O 1.42898 * 109.47465 * 120.00367 * 2 1 3 5 5 C 1.35641 * 117.00284 * 154.37409 * 4 2 1 6 6 C 1.39352 * 120.53964 * 5.67424 * 5 4 2 7 7 C 1.38300 * 118.43971 * 180.25959 * 6 5 4 8 8 C 1.38766 * 119.44504 * 359.72940 * 7 6 5 9 9 N 1.31385 * 121.06662 * 0.02562 * 8 7 6 10 10 C 1.32856 * 121.69443 * 359.97438 * 9 8 7 11 11 C 1.47830 * 119.78278 * 180.02562 * 10 9 8 12 12 O 1.21547 * 120.00352 * 180.02562 * 11 10 9 13 13 N 1.34781 * 119.99991 * 0.02562 * 11 10 9 14 14 C 1.46496 * 120.00173 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.68687 * 37.60946 * 14 13 11 16 16 C 1.55483 * 110.61098 * 160.75379 * 14 13 11 17 17 C 1.55849 * 103.32476 * 118.41544 * 16 14 13 18 18 H 1.09000 * 116.12437 * 159.23719 * 17 16 14 19 19 C 1.55389 * 105.04350 * 288.04114 * 17 16 14 20 20 C 1.54853 * 103.48465 * 72.07828 * 19 17 16 21 21 C 1.55842 * 110.62591 * 274.62797 * 14 13 11 22 22 H 1.09005 * 116.13181 * 82.35959 * 21 14 13 23 23 N 1.50230 * 101.05338 * 33.02404 * 17 16 14 24 24 C 1.36939 * 130.83786 * 126.06331 * 23 17 16 25 25 H 1.08005 * 119.99683 * 190.08779 * 24 23 17 26 26 C 1.38802 * 119.99842 * 10.09137 * 24 23 17 27 27 N 1.31619 * 120.00162 * 9.08628 * 26 24 23 28 28 Si 1.86805 * 120.00059 * 189.08549 * 26 24 23 29 29 H 1.48506 * 109.46959 * 265.02633 * 28 26 24 30 30 H 1.48495 * 109.47276 * 145.02597 * 28 26 24 31 31 H 1.48501 * 109.46907 * 25.02209 * 28 26 24 32 32 H 1.09005 * 109.46623 * 299.99697 * 1 2 3 33 33 H 1.09001 * 109.47062 * 59.99614 * 1 2 3 34 34 H 1.09002 * 109.47024 * 180.02562 * 1 2 3 35 35 H 1.09005 * 109.46623 * 240.00303 * 2 1 3 36 36 H 1.09004 * 109.47015 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.47536 * 300.00095 * 3 2 1 38 38 H 1.09000 * 109.47541 * 60.00323 * 3 2 1 39 39 H 1.07998 * 120.77674 * 359.96525 * 6 5 4 40 40 H 1.07998 * 120.28092 * 179.74583 * 7 6 5 41 41 H 1.08000 * 119.47064 * 180.02562 * 8 7 6 42 42 H 0.97006 * 119.99747 * 359.97438 * 13 11 10 43 43 H 1.09005 * 110.60809 * 0.02562 * 16 14 13 44 44 H 1.08995 * 110.89475 * 236.96769 * 16 14 13 45 45 H 1.09000 * 110.71659 * 313.52216 * 19 17 16 46 46 H 1.08999 * 110.49501 * 190.52993 * 19 17 16 47 47 H 1.08995 * 110.62436 * 241.37680 * 20 19 17 48 48 H 1.09004 * 110.62653 * 118.36300 * 20 19 17 49 49 H 0.97007 * 119.99917 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0065 -0.6737 1.1667 5 6 3.2391 -1.2350 1.0935 6 6 4.0372 -1.0467 -0.0332 7 6 5.2844 -1.6435 -0.0641 8 6 5.7051 -2.4013 1.0196 9 7 4.9376 -2.5612 2.0739 10 6 3.7321 -2.0080 2.1500 11 6 2.9040 -2.2152 3.3570 12 8 1.8003 -1.7113 3.4307 13 7 3.3728 -2.9629 4.3757 14 6 2.5524 -3.1678 5.5720 15 1 1.5016 -3.2777 5.3041 16 6 3.0496 -4.4053 6.3712 17 6 3.4697 -3.8006 7.7449 18 1 3.5201 -4.4981 8.5810 19 6 4.7764 -3.0112 7.4554 20 6 4.2838 -1.7765 6.6611 21 6 2.7426 -1.9914 6.5762 22 1 2.1528 -1.0952 6.3832 23 7 2.4759 -2.6825 7.8833 24 6 1.6006 -2.3823 8.8927 25 1 0.8447 -1.6252 8.7446 26 6 1.6850 -3.0508 10.1062 27 7 2.7089 -3.8402 10.3529 28 14 0.3455 -2.8301 11.3893 29 1 0.7485 -1.7704 12.3485 30 1 0.1437 -4.1075 12.1191 31 1 -0.9207 -2.4368 10.7204 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 3.1301 1.4425 -0.0005 37 1 1.6767 1.9564 -0.8900 38 1 1.6768 1.9563 0.8900 39 1 3.6879 -0.4527 -0.8648 40 1 5.9258 -1.5206 -0.9243 41 1 6.6792 -2.8671 0.9961 42 1 4.2534 -3.3653 4.3167 43 1 3.9057 -4.8633 5.8758 44 1 2.2479 -5.1322 6.5007 45 1 5.4615 -3.6073 6.8525 46 1 5.2511 -2.7040 8.3872 47 1 4.7248 -1.7602 5.6644 48 1 4.5143 -0.8569 7.1990 49 1 2.7677 -4.3077 11.2008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096456055.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:06 Heat of formation + Delta-G solvation = -5.010413 kcal Electronic energy + Delta-G solvation = -31145.111537 eV Core-core repulsion = 27073.358968 eV Total energy + Delta-G solvation = -4071.752569 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.05335 -41.19253 -39.67585 -39.23817 -35.44454 -34.31541 -34.19855 -33.27828 -31.39907 -31.03511 -30.63700 -29.17526 -28.23797 -26.33158 -25.54606 -24.66616 -22.92166 -22.34594 -21.87690 -21.23446 -20.18238 -19.53078 -18.97012 -18.58159 -17.85190 -16.96205 -16.79155 -16.66570 -16.36403 -16.08873 -15.89854 -15.56757 -15.43591 -15.10041 -14.90350 -14.43106 -14.12220 -13.91075 -13.89240 -13.45414 -13.43337 -13.28307 -13.22475 -13.15341 -12.84223 -12.82509 -12.80531 -12.62449 -12.38065 -11.99496 -11.97936 -11.93397 -11.76722 -11.61592 -11.34316 -11.17255 -10.89342 -10.80050 -10.76835 -10.53217 -9.98562 -9.44209 -8.83597 -7.84057 -5.20140 -0.31376 0.26385 1.45567 1.46590 1.56431 1.82854 2.08315 2.16941 2.50346 2.87796 3.24624 3.31582 3.50393 3.60792 3.75449 3.80275 3.90938 3.94871 4.06831 4.08799 4.13108 4.13773 4.20558 4.38949 4.43449 4.53936 4.59890 4.65443 4.70245 4.75707 4.78391 4.78737 4.83272 4.93175 4.96915 5.03135 5.05375 5.11858 5.20705 5.22494 5.24053 5.31931 5.44888 5.50009 5.56519 5.73597 5.86054 6.19909 6.31779 6.56120 6.89016 7.02149 7.32385 7.66484 8.55938 9.26581 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015957 B = 0.002873 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.306995 B = 9744.018326 C =10982.131210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 C -0.175 4.175 4 O -0.301 6.301 5 C 0.126 3.874 6 C -0.175 4.175 7 C -0.086 4.086 8 C 0.053 3.947 9 N -0.437 5.437 10 C 0.005 3.995 11 C 0.561 3.439 12 O -0.561 6.561 13 N -0.685 5.685 14 C 0.148 3.852 15 H 0.056 0.944 16 C -0.126 4.126 17 C 0.148 3.852 18 H 0.111 0.889 19 C -0.119 4.119 20 C -0.118 4.118 21 C 0.120 3.880 22 H 0.063 0.937 23 N -0.615 5.615 24 C -0.230 4.230 25 H 0.068 0.932 26 C -0.059 4.059 27 N -0.940 5.940 28 Si 0.975 3.025 29 H -0.288 1.288 30 H -0.288 1.288 31 H -0.277 1.277 32 H 0.049 0.951 33 H 0.108 0.892 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.175 0.825 40 H 0.189 0.811 41 H 0.199 0.801 42 H 0.415 0.585 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.034 0.966 47 H 0.078 0.922 48 H 0.037 0.963 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.820 4.710 -29.374 30.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.004 3.996 3 C -0.232 4.232 4 O -0.212 6.212 5 C 0.075 3.925 6 C -0.201 4.201 7 C -0.106 4.106 8 C -0.109 4.109 9 N -0.149 5.149 10 C -0.131 4.131 11 C 0.347 3.653 12 O -0.439 6.439 13 N -0.337 5.337 14 C 0.041 3.959 15 H 0.075 0.925 16 C -0.166 4.166 17 C 0.042 3.958 18 H 0.128 0.872 19 C -0.159 4.159 20 C -0.157 4.157 21 C 0.012 3.988 22 H 0.081 0.919 23 N -0.337 5.337 24 C -0.359 4.359 25 H 0.086 0.914 26 C -0.253 4.253 27 N -0.588 5.588 28 Si 0.804 3.196 29 H -0.215 1.215 30 H -0.215 1.215 31 H -0.202 1.202 32 H 0.069 0.931 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.068 0.932 39 H 0.193 0.807 40 H 0.207 0.793 41 H 0.215 0.785 42 H 0.253 0.747 43 H 0.113 0.887 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.053 0.947 47 H 0.096 0.904 48 H 0.056 0.944 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.960 4.555 -28.111 29.316 hybrid contribution -0.847 0.625 0.534 1.180 sum 6.114 5.180 -27.577 28.718 Atomic orbital electron populations 1.21878 0.92075 1.02844 1.03650 1.22929 0.96298 0.93522 0.86878 1.22369 1.02013 0.94959 1.03872 1.86475 1.28551 1.66355 1.39835 1.20274 0.86327 0.91370 0.94520 1.22161 0.95863 1.04217 0.97896 1.22733 0.94955 0.92631 1.00244 1.23431 1.00519 0.98350 0.88607 1.67553 1.02182 1.17606 1.27581 1.20386 0.94249 1.03323 0.95132 1.18181 0.85494 0.78735 0.82890 1.90795 1.21633 1.50276 1.81209 1.45807 1.20854 1.51256 1.15768 1.22206 0.93726 0.96429 0.83494 0.92528 1.23245 1.01026 0.95196 0.97104 1.23257 0.87481 0.90552 0.94481 0.87171 1.22804 0.97946 0.96829 0.98273 1.22797 0.95917 0.97604 0.99391 1.23274 0.95051 0.93896 0.86597 0.91875 1.46709 1.43015 1.28122 1.15889 1.19258 1.06914 1.18297 0.91426 0.91437 1.25463 1.00204 1.00912 0.98694 1.69857 1.30446 1.34525 1.23985 0.85120 0.78923 0.76729 0.78877 1.21517 1.21467 1.20183 0.93145 0.87353 0.92731 0.88536 0.91647 0.87985 0.93165 0.80738 0.79348 0.78455 0.74705 0.88735 0.92506 0.89760 0.94695 0.90362 0.94424 0.94079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.56 71.99 0.69 -1.76 16 2 C 0.06 1.00 2.84 30.60 0.09 1.09 16 3 C -0.17 -2.34 9.20 71.98 0.66 -1.68 16 4 O -0.30 -8.39 7.86 -68.57 -0.54 -8.92 16 5 C 0.13 3.13 6.63 22.94 0.15 3.28 16 6 C -0.18 -2.48 8.36 22.55 0.19 -2.29 16 7 C -0.09 -0.83 10.10 22.41 0.23 -0.60 16 8 C 0.05 0.75 11.17 84.89 0.95 1.70 16 9 N -0.44 -10.19 9.54 -184.63 -1.76 -11.95 16 10 C 0.01 0.15 6.76 41.93 0.28 0.44 16 11 C 0.56 20.58 7.79 86.78 0.68 21.26 16 12 O -0.56 -24.91 14.88 17.12 0.25 -24.65 16 13 N -0.68 -23.49 3.62 -436.76 -1.58 -25.07 16 14 C 0.15 6.07 3.09 46.83 0.14 6.22 16 15 H 0.06 2.61 7.72 -2.39 -0.02 2.59 16 16 C -0.13 -4.95 6.23 32.43 0.20 -4.75 16 17 C 0.15 7.04 4.61 46.07 0.21 7.26 16 18 H 0.11 5.98 5.89 -2.39 -0.01 5.97 16 19 C -0.12 -4.90 6.42 32.05 0.21 -4.70 16 20 C -0.12 -4.79 6.32 32.21 0.20 -4.59 16 21 C 0.12 5.58 5.34 46.23 0.25 5.82 16 22 H 0.06 3.16 8.14 -2.38 -0.02 3.14 16 23 N -0.62 -33.12 2.98 -616.10 -1.83 -34.95 16 24 C -0.23 -13.62 10.55 84.03 0.89 -12.74 16 25 H 0.07 3.98 7.85 -2.91 -0.02 3.96 16 26 C -0.06 -3.45 5.46 84.86 0.46 -2.99 16 27 N -0.94 -56.18 10.75 21.65 0.23 -55.95 16 28 Si 0.97 47.43 29.56 68.60 2.03 49.46 16 29 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 30 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 31 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 32 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.10 1.08 6.32 -2.38 -0.02 1.06 16 36 H 0.06 0.80 7.00 -2.38 -0.02 0.79 16 37 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.18 1.32 5.62 -2.91 -0.02 1.31 16 40 H 0.19 0.05 8.06 -2.91 -0.02 0.03 16 41 H 0.20 1.29 8.06 -2.91 -0.02 1.26 16 42 H 0.41 12.24 7.36 -92.70 -0.68 11.56 16 43 H 0.09 2.99 7.33 -2.38 -0.02 2.97 16 44 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.08 2.78 7.80 -2.39 -0.02 2.76 16 46 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.08 2.77 6.49 -2.39 -0.02 2.76 16 48 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 49 H 0.25 14.45 8.31 -92.70 -0.77 13.67 16 Total: -1.00 -79.42 388.05 3.57 -75.85 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.29 Total: 25.22 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 6.48 Total: 10.98 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -4.94 Total: -127.92 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.28 Total: -33.58 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -79.42 3.57 -75.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096456055.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.835 kcal (2) G-P(sol) polarization free energy of solvation -79.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds