Wall clock time and date at job start Wed Apr 1 2020 04:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46803 * 2 1 4 4 O 1.42892 * 109.47096 * 119.99980 * 2 1 3 5 5 C 1.35428 * 117.00348 * 150.00329 * 4 2 1 6 6 N 1.32246 * 119.79482 * 0.26722 * 5 4 2 7 7 C 1.31882 * 121.79877 * 180.27335 * 6 5 4 8 8 C 1.38359 * 121.18431 * 359.74313 * 7 6 5 9 9 C 1.38338 * 119.46060 * 359.97438 * 8 7 6 10 10 C 1.39995 * 118.34848 * 359.97438 * 9 8 7 11 11 C 1.47517 * 120.59915 * 180.02562 * 10 9 8 12 12 O 1.21585 * 120.00513 * 180.02562 * 11 10 9 13 13 N 1.34779 * 119.99560 * 359.97438 * 11 10 9 14 14 C 1.46507 * 119.99455 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.68552 * 32.01432 * 14 13 11 16 16 C 1.54853 * 110.62456 * 269.02314 * 14 13 11 17 17 C 1.55847 * 103.44638 * 241.51415 * 16 14 13 18 18 H 1.08997 * 115.56393 * 158.81308 * 17 16 14 19 19 C 1.55847 * 105.06162 * 288.17626 * 17 16 14 20 20 C 1.55877 * 103.52933 * 72.43206 * 19 17 16 21 21 C 1.55846 * 102.97150 * 359.11585 * 20 19 17 22 22 H 1.09002 * 115.56047 * 159.69072 * 21 20 19 23 23 N 1.50240 * 101.04996 * 33.81862 * 21 20 19 24 24 C 1.36936 * 130.84094 * 125.33662 * 23 21 20 25 25 H 1.07998 * 119.99652 * 0.02562 * 24 23 21 26 26 C 1.38806 * 119.99943 * 180.02562 * 24 23 21 27 27 N 1.31618 * 120.00533 * 359.97438 * 26 24 23 28 28 Si 1.86804 * 119.99635 * 179.97438 * 26 24 23 29 29 H 1.48508 * 109.47071 * 90.00245 * 28 26 24 30 30 H 1.48495 * 109.47075 * 209.99763 * 28 26 24 31 31 H 1.48498 * 109.47523 * 329.99916 * 28 26 24 32 32 H 1.09002 * 109.47033 * 299.99926 * 1 2 3 33 33 H 1.09001 * 109.47096 * 59.99635 * 1 2 3 34 34 H 1.08994 * 109.47145 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.47033 * 240.00074 * 2 1 3 36 36 H 1.08997 * 109.47684 * 60.00025 * 3 2 1 37 37 H 1.09006 * 109.46586 * 180.02562 * 3 2 1 38 38 H 1.09001 * 109.47165 * 299.99735 * 3 2 1 39 39 H 1.07995 * 119.40648 * 179.72062 * 7 6 5 40 40 H 1.07999 * 120.26791 * 179.97438 * 8 7 6 41 41 H 1.07992 * 120.82753 * 179.97438 * 9 8 7 42 42 H 0.97001 * 120.00656 * 359.97438 * 13 11 10 43 43 H 1.08997 * 110.62526 * 123.02521 * 16 14 13 44 44 H 1.09001 * 110.62973 * 0.02562 * 16 14 13 45 45 H 1.09003 * 110.62865 * 190.31234 * 19 17 16 46 46 H 1.08998 * 110.62667 * 313.17604 * 19 17 16 47 47 H 1.09006 * 110.09627 * 241.13600 * 20 19 17 48 48 H 1.09001 * 111.60505 * 117.80684 * 20 19 17 49 49 H 0.97003 * 120.00245 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.1965 -1.3117 1.0655 6 7 3.8612 -1.2853 -0.0775 7 6 5.0205 -1.8973 -0.2215 8 6 5.5979 -2.5937 0.8253 9 6 4.9487 -2.6493 2.0456 10 6 3.7199 -1.9914 2.1755 11 6 2.9853 -2.0180 3.4544 12 8 1.9186 -1.4432 3.5550 13 7 3.4961 -2.6804 4.5112 14 6 2.7662 -2.7073 5.7812 15 1 1.6904 -2.6817 5.6077 16 6 3.2012 -1.5278 6.6854 17 6 3.7970 -2.2339 7.9406 18 1 4.4785 -1.6307 8.5403 19 6 2.5683 -2.8314 8.6904 20 6 2.1386 -4.0289 7.7899 21 6 3.1584 -3.9654 6.6132 22 1 3.2777 -4.8873 6.0439 23 7 4.3865 -3.4701 7.3229 24 6 5.6533 -3.9861 7.3868 25 1 5.8902 -4.9017 6.8654 26 6 6.6327 -3.3324 8.1217 27 7 6.3441 -2.2163 8.7568 28 14 8.3606 -4.0369 8.2094 29 1 9.1770 -3.4853 7.0983 30 1 8.9797 -3.6693 9.5082 31 1 8.2989 -5.5159 8.0915 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.1300 1.4425 -0.0005 38 1 1.6766 1.9563 -0.8900 39 1 5.5281 -1.8543 -1.1738 40 1 6.5477 -3.0898 0.6908 41 1 5.3791 -3.1870 2.8775 42 1 4.3465 -3.1400 4.4307 43 1 2.3412 -0.9173 6.9603 44 1 3.9596 -0.9226 6.1888 45 1 2.8586 -3.1911 9.6776 46 1 1.7713 -2.0923 8.7715 47 1 1.1223 -3.8779 7.4258 48 1 2.2210 -4.9785 8.3187 49 1 7.0285 -1.7597 9.2707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098532142.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:40 Heat of formation + Delta-G solvation = 8.768854 kcal Electronic energy + Delta-G solvation = -31191.325667 eV Core-core repulsion = 27120.170612 eV Total energy + Delta-G solvation = -4071.155055 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.94040 -39.52798 -38.35519 -37.95436 -33.88717 -33.29622 -32.76906 -32.31031 -30.39540 -29.09812 -28.77237 -27.65876 -27.36836 -24.71174 -24.20858 -23.64737 -21.59500 -21.23287 -19.94115 -19.80393 -18.83703 -18.46080 -17.26468 -17.00360 -16.90331 -15.84264 -15.52341 -15.19645 -14.84835 -14.61418 -14.47929 -14.29272 -13.93796 -13.76906 -13.64726 -13.20831 -13.10542 -12.79133 -12.45668 -12.40847 -12.38588 -12.04615 -12.03607 -11.82484 -11.23432 -11.10979 -11.03850 -10.94505 -10.92308 -10.86907 -10.48222 -10.35837 -10.11812 -10.01398 -9.98358 -9.89132 -9.57296 -9.22271 -9.11996 -8.97662 -8.62335 -8.34179 -6.95941 -5.76174 -3.15365 0.66695 1.16740 2.94334 3.12300 3.33504 3.38893 3.41431 3.55596 3.89341 4.14537 4.38618 4.66345 4.77932 4.78735 4.87346 4.92294 5.06864 5.12495 5.13838 5.33948 5.41723 5.42525 5.62599 5.65892 5.66484 5.67910 5.71345 5.76820 5.87642 5.96110 6.03741 6.06926 6.08329 6.13987 6.16466 6.28160 6.32407 6.43640 6.51683 6.61524 6.76071 6.84422 6.96973 7.15153 7.25213 7.34552 7.45406 7.65932 7.78481 8.04368 8.16384 8.68289 9.05374 9.68708 10.50509 11.32709 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.003293 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.378738 B = 8500.676593 C = 9911.557954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 C -0.167 4.167 4 O -0.262 6.262 5 C 0.372 3.628 6 N -0.549 5.549 7 C 0.160 3.840 8 C -0.221 4.221 9 C -0.007 4.007 10 C -0.204 4.204 11 C 0.558 3.442 12 O -0.527 6.527 13 N -0.703 5.703 14 C 0.132 3.868 15 H 0.081 0.919 16 C -0.143 4.143 17 C 0.154 3.846 18 H 0.153 0.847 19 C -0.138 4.138 20 C -0.127 4.127 21 C 0.124 3.876 22 H 0.086 0.914 23 N -0.592 5.592 24 C -0.215 4.215 25 H 0.078 0.922 26 C -0.010 4.010 27 N -0.919 5.919 28 Si 0.914 3.086 29 H -0.290 1.290 30 H -0.291 1.291 31 H -0.282 1.282 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.162 0.838 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.399 0.601 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.051 0.949 48 H 0.058 0.942 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.971 1.349 -16.792 17.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.019 3.981 3 C -0.225 4.225 4 O -0.167 6.167 5 C 0.192 3.808 6 N -0.273 5.273 7 C 0.003 3.997 8 C -0.242 4.242 9 C -0.033 4.033 10 C -0.210 4.210 11 C 0.343 3.657 12 O -0.405 6.405 13 N -0.353 5.353 14 C 0.025 3.975 15 H 0.099 0.901 16 C -0.184 4.184 17 C 0.047 3.953 18 H 0.170 0.830 19 C -0.177 4.177 20 C -0.167 4.167 21 C 0.016 3.984 22 H 0.104 0.896 23 N -0.313 5.313 24 C -0.343 4.343 25 H 0.096 0.904 26 C -0.206 4.206 27 N -0.566 5.566 28 Si 0.745 3.255 29 H -0.217 1.217 30 H -0.217 1.217 31 H -0.208 1.208 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.179 0.821 40 H 0.160 0.840 41 H 0.165 0.835 42 H 0.234 0.766 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.003 2.250 -17.050 18.569 hybrid contribution 1.868 -0.975 0.475 2.160 sum -5.135 1.275 -16.575 17.399 Atomic orbital electron populations 1.21870 0.92811 1.03033 1.02859 1.22406 0.94779 0.92855 0.88064 1.22208 1.01949 0.95738 1.02584 1.86613 1.30203 1.62634 1.37211 1.19820 0.85640 0.87181 0.88183 1.67393 1.11005 1.24765 1.24144 1.22597 0.89132 0.89265 0.98735 1.21923 1.03077 1.05125 0.94054 1.21779 0.91178 0.92379 0.97934 1.20199 0.98570 1.07089 0.95189 1.17745 0.85296 0.79668 0.82959 1.90788 1.21705 1.44126 1.83833 1.45891 1.24834 1.53373 1.11236 1.22592 0.94999 0.98079 0.81784 0.90118 1.23467 0.99364 0.96605 0.98920 1.23760 0.91115 0.88590 0.91825 0.83021 1.23230 0.98879 0.96647 0.98978 1.23030 0.97161 0.98745 0.97750 1.23166 0.88684 0.93951 0.92611 0.89602 1.46545 1.04822 1.24490 1.55395 1.18989 0.84022 1.05342 1.25930 0.90438 1.24698 0.98180 0.97527 1.00159 1.69462 1.32462 1.18171 1.36520 0.86085 0.84205 0.78116 0.77124 1.21725 1.21715 1.20812 0.91338 0.90762 0.91874 0.89548 0.91758 0.92157 0.91266 0.82119 0.83963 0.83486 0.76550 0.92805 0.92262 0.92759 0.93227 0.93059 0.92297 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.56 37.16 0.36 -1.14 16 2 C 0.08 0.91 3.11 -26.73 -0.08 0.83 16 3 C -0.17 -1.80 9.53 37.16 0.35 -1.45 16 4 O -0.26 -4.19 7.86 -39.74 -0.31 -4.51 16 5 C 0.37 5.71 7.47 -16.61 -0.12 5.58 16 6 N -0.55 -7.11 8.64 -12.98 -0.11 -7.22 16 7 C 0.16 1.61 11.17 -17.49 -0.20 1.42 16 8 C -0.22 -2.21 10.09 -39.50 -0.40 -2.61 16 9 C -0.01 -0.08 9.64 -38.89 -0.37 -0.46 16 10 C -0.20 -3.18 5.90 -104.69 -0.62 -3.80 16 11 C 0.56 10.17 7.77 -12.48 -0.10 10.08 16 12 O -0.53 -11.15 14.84 -16.48 -0.24 -11.40 16 13 N -0.70 -12.44 5.03 -52.43 -0.26 -12.70 16 14 C 0.13 2.49 2.82 -65.43 -0.18 2.31 16 15 H 0.08 1.55 7.26 -51.93 -0.38 1.17 16 16 C -0.14 -2.96 6.23 -24.23 -0.15 -3.11 16 17 C 0.15 3.48 4.72 -62.80 -0.30 3.19 16 18 H 0.15 3.95 5.52 -51.93 -0.29 3.67 16 19 C -0.14 -2.73 6.46 -23.67 -0.15 -2.88 16 20 C -0.13 -2.30 6.53 -23.68 -0.15 -2.46 16 21 C 0.12 2.41 5.01 -62.80 -0.31 2.09 16 22 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 23 N -0.59 -13.78 2.98 -145.81 -0.43 -14.22 16 24 C -0.21 -5.49 10.59 -15.06 -0.16 -5.65 16 25 H 0.08 1.90 7.83 -52.49 -0.41 1.49 16 26 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 27 N -0.92 -25.44 10.46 55.49 0.58 -24.86 16 28 Si 0.91 20.99 29.55 -169.99 -5.02 15.97 16 29 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 30 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 31 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.00 6.99 -51.93 -0.36 0.64 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.15 1.66 6.51 -52.49 -0.34 1.31 16 42 H 0.40 6.66 6.76 -40.82 -0.28 6.39 16 43 H 0.05 1.05 7.82 -51.93 -0.41 0.64 16 44 H 0.06 1.33 7.98 -51.93 -0.41 0.92 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.05 0.88 7.82 -51.93 -0.41 0.48 16 47 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -31.25 392.83 -10.06 -41.30 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -7.47 Total: 10.13 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -2.69 Total: 1.58 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.23 Total: -59.00 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.56 Total: -15.90 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.25 -10.06 -41.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098532142.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.071 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds