Wall clock time and date at job start Wed Apr 1 2020 04:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46803 * 2 1 4 4 O 1.42892 * 109.47096 * 119.99980 * 2 1 3 5 5 C 1.35428 * 117.00348 * 150.00329 * 4 2 1 6 6 N 1.32246 * 119.79482 * 0.26722 * 5 4 2 7 7 C 1.31882 * 121.79877 * 180.27335 * 6 5 4 8 8 C 1.38359 * 121.18431 * 359.74313 * 7 6 5 9 9 C 1.38338 * 119.46060 * 359.97438 * 8 7 6 10 10 C 1.39995 * 118.34848 * 359.97438 * 9 8 7 11 11 C 1.47517 * 120.59915 * 180.02562 * 10 9 8 12 12 O 1.21585 * 120.00513 * 180.02562 * 11 10 9 13 13 N 1.34779 * 119.99560 * 359.97438 * 11 10 9 14 14 C 1.46507 * 119.99455 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.68552 * 32.01432 * 14 13 11 16 16 C 1.54853 * 110.62456 * 269.02314 * 14 13 11 17 17 C 1.55847 * 103.44638 * 241.51415 * 16 14 13 18 18 H 1.08997 * 115.56393 * 158.81308 * 17 16 14 19 19 C 1.55847 * 105.06162 * 288.17626 * 17 16 14 20 20 C 1.55877 * 103.52933 * 72.43206 * 19 17 16 21 21 C 1.55846 * 102.97150 * 359.11585 * 20 19 17 22 22 H 1.09002 * 115.56047 * 159.69072 * 21 20 19 23 23 N 1.50240 * 101.04996 * 33.81862 * 21 20 19 24 24 C 1.36936 * 130.84094 * 125.33662 * 23 21 20 25 25 H 1.07998 * 119.99652 * 0.02562 * 24 23 21 26 26 C 1.38806 * 119.99943 * 180.02562 * 24 23 21 27 27 N 1.31618 * 120.00533 * 359.97438 * 26 24 23 28 28 Si 1.86804 * 119.99635 * 179.97438 * 26 24 23 29 29 H 1.48508 * 109.47071 * 90.00245 * 28 26 24 30 30 H 1.48495 * 109.47075 * 209.99763 * 28 26 24 31 31 H 1.48498 * 109.47523 * 329.99916 * 28 26 24 32 32 H 1.09002 * 109.47033 * 299.99926 * 1 2 3 33 33 H 1.09001 * 109.47096 * 59.99635 * 1 2 3 34 34 H 1.08994 * 109.47145 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.47033 * 240.00074 * 2 1 3 36 36 H 1.08997 * 109.47684 * 60.00025 * 3 2 1 37 37 H 1.09006 * 109.46586 * 180.02562 * 3 2 1 38 38 H 1.09001 * 109.47165 * 299.99735 * 3 2 1 39 39 H 1.07995 * 119.40648 * 179.72062 * 7 6 5 40 40 H 1.07999 * 120.26791 * 179.97438 * 8 7 6 41 41 H 1.07992 * 120.82753 * 179.97438 * 9 8 7 42 42 H 0.97001 * 120.00656 * 359.97438 * 13 11 10 43 43 H 1.08997 * 110.62526 * 123.02521 * 16 14 13 44 44 H 1.09001 * 110.62973 * 0.02562 * 16 14 13 45 45 H 1.09003 * 110.62865 * 190.31234 * 19 17 16 46 46 H 1.08998 * 110.62667 * 313.17604 * 19 17 16 47 47 H 1.09006 * 110.09627 * 241.13600 * 20 19 17 48 48 H 1.09001 * 111.60505 * 117.80684 * 20 19 17 49 49 H 0.97003 * 120.00245 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.1965 -1.3117 1.0655 6 7 3.8612 -1.2853 -0.0775 7 6 5.0205 -1.8973 -0.2215 8 6 5.5979 -2.5937 0.8253 9 6 4.9487 -2.6493 2.0456 10 6 3.7199 -1.9914 2.1755 11 6 2.9853 -2.0180 3.4544 12 8 1.9186 -1.4432 3.5550 13 7 3.4961 -2.6804 4.5112 14 6 2.7662 -2.7073 5.7812 15 1 1.6904 -2.6817 5.6077 16 6 3.2012 -1.5278 6.6854 17 6 3.7970 -2.2339 7.9406 18 1 4.4785 -1.6307 8.5403 19 6 2.5683 -2.8314 8.6904 20 6 2.1386 -4.0289 7.7899 21 6 3.1584 -3.9654 6.6132 22 1 3.2777 -4.8873 6.0439 23 7 4.3865 -3.4701 7.3229 24 6 5.6533 -3.9861 7.3868 25 1 5.8902 -4.9017 6.8654 26 6 6.6327 -3.3324 8.1217 27 7 6.3441 -2.2163 8.7568 28 14 8.3606 -4.0369 8.2094 29 1 9.1770 -3.4853 7.0983 30 1 8.9797 -3.6693 9.5082 31 1 8.2989 -5.5159 8.0915 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.1300 1.4425 -0.0005 38 1 1.6766 1.9563 -0.8900 39 1 5.5281 -1.8543 -1.1738 40 1 6.5477 -3.0898 0.6908 41 1 5.3791 -3.1870 2.8775 42 1 4.3465 -3.1400 4.4307 43 1 2.3412 -0.9173 6.9603 44 1 3.9596 -0.9226 6.1888 45 1 2.8586 -3.1911 9.6776 46 1 1.7713 -2.0923 8.7715 47 1 1.1223 -3.8779 7.4258 48 1 2.2210 -4.9785 8.3187 49 1 7.0285 -1.7597 9.2707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098532142.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:39 Heat of formation + Delta-G solvation = -9.942399 kcal Electronic energy + Delta-G solvation = -31192.137048 eV Core-core repulsion = 27120.170612 eV Total energy + Delta-G solvation = -4071.966436 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.00229 -41.03274 -39.61881 -39.14978 -35.36007 -34.46977 -34.22816 -33.53456 -31.39414 -30.94055 -30.35887 -29.21719 -28.19904 -26.17472 -25.63912 -24.70911 -22.95560 -22.23873 -21.53134 -21.30667 -20.39000 -19.55761 -18.83317 -18.48887 -17.98123 -16.99613 -16.83494 -16.68581 -16.12910 -15.90060 -15.85107 -15.44793 -15.39684 -15.15673 -14.81624 -14.53148 -14.18651 -13.99242 -13.69600 -13.64068 -13.41210 -13.28691 -13.20089 -12.90067 -12.87854 -12.87269 -12.73469 -12.68171 -12.07699 -11.96096 -11.92565 -11.88932 -11.76933 -11.67702 -11.27015 -11.03092 -11.01415 -10.92599 -10.84347 -10.49435 -9.97123 -9.50623 -8.85312 -7.73257 -5.13454 -0.33313 0.22897 1.50986 1.52344 1.60218 1.90581 1.99963 2.22328 2.52428 2.81442 3.24286 3.39991 3.46153 3.73301 3.76652 3.91317 3.98337 4.01388 4.02931 4.09489 4.18763 4.23912 4.27638 4.45964 4.47227 4.51239 4.63630 4.66192 4.71002 4.79315 4.81705 4.83614 4.85196 4.89502 4.91523 5.08086 5.10268 5.17167 5.18554 5.19665 5.22991 5.38851 5.44737 5.53268 5.61263 5.72071 5.90943 6.28158 6.29317 6.60149 6.76121 7.07621 7.28729 7.74847 8.60900 9.34213 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.003293 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.378738 B = 8500.676593 C = 9911.557954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 C -0.161 4.161 4 O -0.293 6.293 5 C 0.355 3.645 6 N -0.555 5.555 7 C 0.167 3.833 8 C -0.209 4.209 9 C -0.009 4.009 10 C -0.238 4.238 11 C 0.557 3.443 12 O -0.565 6.565 13 N -0.700 5.700 14 C 0.142 3.858 15 H 0.084 0.916 16 C -0.133 4.133 17 C 0.141 3.859 18 H 0.116 0.884 19 C -0.131 4.131 20 C -0.118 4.118 21 C 0.128 3.872 22 H 0.103 0.897 23 N -0.609 5.609 24 C -0.213 4.213 25 H 0.088 0.912 26 C -0.068 4.068 27 N -0.949 5.949 28 Si 0.974 3.026 29 H -0.288 1.288 30 H -0.304 1.304 31 H -0.270 1.270 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.097 0.903 39 H 0.206 0.794 40 H 0.180 0.820 41 H 0.155 0.845 42 H 0.404 0.596 43 H 0.063 0.937 44 H 0.031 0.969 45 H 0.038 0.962 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.063 0.937 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.631 -0.025 -19.430 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.012 3.988 3 C -0.218 4.218 4 O -0.198 6.198 5 C 0.176 3.824 6 N -0.279 5.279 7 C 0.010 3.990 8 C -0.228 4.228 9 C -0.035 4.035 10 C -0.244 4.244 11 C 0.345 3.655 12 O -0.445 6.445 13 N -0.350 5.350 14 C 0.035 3.965 15 H 0.102 0.898 16 C -0.174 4.174 17 C 0.034 3.966 18 H 0.134 0.866 19 C -0.171 4.171 20 C -0.158 4.158 21 C 0.021 3.979 22 H 0.121 0.879 23 N -0.330 5.330 24 C -0.342 4.342 25 H 0.106 0.894 26 C -0.260 4.260 27 N -0.599 5.599 28 Si 0.804 3.196 29 H -0.215 1.215 30 H -0.231 1.231 31 H -0.195 1.195 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.116 0.884 39 H 0.222 0.778 40 H 0.198 0.802 41 H 0.172 0.828 42 H 0.240 0.760 43 H 0.081 0.919 44 H 0.050 0.950 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.082 0.918 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.677 0.847 -19.713 20.830 hybrid contribution 1.785 -0.532 1.181 2.206 sum -4.892 0.315 -18.531 19.169 Atomic orbital electron populations 1.21890 0.91611 1.02905 1.03721 1.22682 0.95772 0.93144 0.87230 1.22168 1.01068 0.95242 1.03341 1.86575 1.30884 1.63162 1.39203 1.19978 0.85916 0.87623 0.88900 1.67493 1.12057 1.25350 1.23005 1.23439 0.87920 0.87176 1.00450 1.22346 1.03858 1.04031 0.92593 1.21975 0.90197 0.91904 0.99448 1.20092 1.00178 1.09965 0.94135 1.18185 0.84940 0.78599 0.83814 1.90750 1.23429 1.45692 1.84621 1.45813 1.24922 1.53464 1.10812 1.22407 0.95188 0.96903 0.81971 0.89804 1.23326 0.98716 0.96960 0.98383 1.23583 0.91765 0.88701 0.92539 0.86648 1.23129 0.98099 0.97725 0.98102 1.22989 0.98127 0.98069 0.96614 1.23353 0.87291 0.94452 0.92852 0.87941 1.46721 1.05348 1.24933 1.56046 1.19372 0.84989 1.05172 1.24654 0.89415 1.25439 1.01525 0.98186 1.00876 1.69725 1.32818 1.19563 1.37778 0.85121 0.80286 0.77989 0.76169 1.21520 1.23135 1.19502 0.92622 0.87650 0.92492 0.89063 0.93029 0.93394 0.88388 0.77754 0.80228 0.82774 0.75983 0.91861 0.94999 0.94292 0.91199 0.90291 0.91789 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.56 71.98 0.69 -2.15 16 2 C 0.07 1.61 3.11 30.59 0.10 1.70 16 3 C -0.16 -3.38 9.53 71.98 0.69 -2.70 16 4 O -0.29 -9.61 7.86 -66.42 -0.52 -10.13 16 5 C 0.36 10.87 7.47 85.13 0.64 11.51 16 6 N -0.55 -13.43 8.64 -307.99 -2.66 -16.10 16 7 C 0.17 2.80 11.17 84.71 0.95 3.74 16 8 C -0.21 -3.45 10.09 22.32 0.23 -3.22 16 9 C -0.01 -0.22 9.64 22.72 0.22 0.00 16 10 C -0.24 -7.39 5.90 -19.91 -0.12 -7.51 16 11 C 0.56 20.72 7.77 86.69 0.67 21.39 16 12 O -0.56 -24.66 14.84 16.83 0.25 -24.41 16 13 N -0.70 -24.83 5.03 -438.07 -2.20 -27.03 16 14 C 0.14 5.33 2.82 46.61 0.13 5.46 16 15 H 0.08 3.14 7.26 -2.39 -0.02 3.12 16 16 C -0.13 -5.63 6.23 32.21 0.20 -5.43 16 17 C 0.14 6.51 4.72 46.23 0.22 6.73 16 18 H 0.12 6.31 5.52 -2.39 -0.01 6.30 16 19 C -0.13 -5.12 6.46 32.57 0.21 -4.91 16 20 C -0.12 -4.06 6.53 32.57 0.21 -3.84 16 21 C 0.13 4.77 5.01 46.23 0.23 5.00 16 22 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 23 N -0.61 -28.36 2.98 -615.23 -1.83 -30.19 16 24 C -0.21 -10.84 10.59 84.03 0.89 -9.96 16 25 H 0.09 4.18 7.83 -2.91 -0.02 4.16 16 26 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 27 N -0.95 -54.39 10.46 21.65 0.23 -54.17 16 28 Si 0.97 43.50 29.55 68.60 2.03 45.53 16 29 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 30 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 31 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 2.03 6.99 -2.39 -0.02 2.01 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.21 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.15 3.25 6.51 -2.91 -0.02 3.24 16 42 H 0.40 13.39 6.76 -92.71 -0.63 12.76 16 43 H 0.06 2.50 7.82 -2.39 -0.02 2.48 16 44 H 0.03 1.48 7.98 -2.39 -0.02 1.46 16 45 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.07 2.41 7.82 -2.39 -0.02 2.39 16 47 H 0.08 2.30 7.85 -2.38 -0.02 2.28 16 48 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.24 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -71.05 392.83 2.24 -68.81 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.34 Total: 35.02 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 6.61 Total: 12.66 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -6.47 Total: -127.48 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.27 Total: -34.54 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -71.05 2.24 -68.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098532142.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.867 kcal (2) G-P(sol) polarization free energy of solvation -71.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds