Wall clock time and date at job start Wed Apr 1 2020 04:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 109.46886 * 2 1 4 4 O 1.21294 * 119.99888 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00059 * 180.02562 * 3 2 1 6 6 C 1.39961 * 119.99806 * 184.62162 * 5 3 2 7 7 C 1.38986 * 119.99413 * 144.88721 * 6 5 3 8 8 C 1.38215 * 120.21712 * 180.02562 * 7 6 5 9 9 C 1.38016 * 120.22776 * 359.97438 * 8 7 6 10 10 C 1.39582 * 119.99306 * 359.97438 * 9 8 7 11 11 C 1.47859 * 120.10944 * 180.02562 * 10 9 8 12 12 O 1.21550 * 119.99707 * 179.97438 * 11 10 9 13 13 N 1.34771 * 120.00300 * 359.97438 * 11 10 9 14 14 C 1.46499 * 120.00493 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47597 * 180.02562 * 14 13 11 16 16 H 1.09002 * 109.47155 * 64.99790 * 15 14 13 17 17 N 1.46504 * 109.47017 * 305.00431 * 15 14 13 18 18 C 1.36935 * 120.00001 * 154.99920 * 17 15 14 19 19 H 1.07998 * 119.99941 * 359.97438 * 18 17 15 20 20 C 1.38813 * 120.00036 * 179.97438 * 18 17 15 21 21 N 1.31619 * 119.99936 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99790 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46901 * 90.00357 * 22 20 18 24 24 H 1.48499 * 109.46581 * 210.00180 * 22 20 18 25 25 H 1.48497 * 109.47062 * 330.00092 * 22 20 18 26 26 C 1.52996 * 109.47461 * 185.00385 * 15 14 13 27 27 C 1.53002 * 117.50012 * 248.75126 * 26 15 14 28 28 C 1.52998 * 117.50117 * 180.08802 * 26 15 14 29 29 C 1.38590 * 119.99808 * 324.91067 * 6 5 3 30 30 H 1.08997 * 109.47485 * 60.00267 * 1 2 3 31 31 H 1.09003 * 109.46613 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47151 * 299.99496 * 1 2 3 33 33 H 1.09001 * 109.47151 * 240.00504 * 2 1 3 34 34 H 1.08997 * 109.47485 * 119.99733 * 2 1 3 35 35 H 0.96995 * 119.99950 * 4.62071 * 5 3 2 36 36 H 1.07992 * 119.89574 * 0.02562 * 7 6 5 37 37 H 1.08006 * 119.88486 * 180.02562 * 8 7 6 38 38 H 1.08001 * 120.00363 * 179.97438 * 9 8 7 39 39 H 0.97003 * 120.00264 * 0.02562 * 13 11 10 40 40 H 1.08999 * 109.47398 * 300.00692 * 14 13 11 41 41 H 1.09003 * 109.46954 * 59.99925 * 14 13 11 42 42 H 0.96994 * 119.99937 * 334.99262 * 17 15 14 43 43 H 0.97001 * 119.99827 * 179.97438 * 21 20 18 44 44 H 1.08999 * 115.55094 * 34.41413 * 26 15 14 45 45 H 1.09007 * 117.49640 * 359.97438 * 27 26 15 46 46 H 1.09001 * 117.50291 * 145.01604 * 27 26 15 47 47 H 1.08999 * 117.49963 * 214.97348 * 28 26 15 48 48 H 1.08993 * 117.49928 * 359.97438 * 28 26 15 49 49 H 1.08005 * 120.11561 * 359.70188 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2440 2.3428 0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8245 2.9830 0.0971 7 6 4.9950 3.2546 0.7956 8 6 5.4603 4.5523 0.8954 9 6 4.7661 5.5869 0.3018 10 6 3.5901 5.3243 -0.4028 11 6 2.8446 6.4307 -1.0403 12 8 1.8210 6.1997 -1.6538 13 7 3.3000 7.6953 -0.9412 14 6 2.5617 8.7915 -1.5733 15 6 3.2876 10.1127 -1.3120 16 1 4.2593 10.0972 -1.8056 17 7 3.4752 10.2899 0.1301 18 6 4.4960 11.0746 0.5964 19 1 5.1630 11.5625 -0.0989 20 6 4.6735 11.2429 1.9628 21 7 3.8603 10.6487 2.8102 22 14 6.0656 12.3140 2.5989 23 1 5.5888 13.7132 2.7399 24 1 6.5146 11.8083 3.9210 25 1 7.1999 12.2716 1.6414 26 6 2.4536 11.2706 -1.8638 27 6 3.0021 12.0195 -3.0801 28 6 3.0139 12.6850 -1.7016 29 6 3.1197 4.0148 -0.5022 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9872 0.9327 -0.0686 36 1 5.5428 2.4492 1.2619 37 1 6.3707 4.7572 1.4392 38 1 5.1327 6.5996 0.3824 39 1 4.1171 7.8797 -0.4519 40 1 2.5011 8.6169 -2.6475 41 1 1.5559 8.8403 -1.1559 42 1 2.8764 9.8515 0.7546 43 1 3.9846 10.7660 3.7650 44 1 1.3729 11.1464 -1.7946 45 1 3.9573 11.6875 -3.4868 46 1 2.2823 12.3883 -3.8108 47 1 2.3019 13.4914 -1.5261 48 1 3.9765 12.7907 -1.2013 49 1 2.2123 3.8051 -1.0492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265358988.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:28 Heat of formation + Delta-G solvation = -10.782068 kcal Electronic energy + Delta-G solvation = -29615.774832 eV Core-core repulsion = 25543.771985 eV Total energy + Delta-G solvation = -4072.002847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.78995 -39.57686 -38.15859 -37.40085 -34.96937 -34.62253 -33.39103 -33.15877 -31.38703 -30.73497 -29.68987 -27.92804 -25.09484 -24.45791 -23.31633 -22.44640 -22.07262 -21.67372 -20.45690 -20.20164 -19.57124 -18.28386 -17.46449 -17.17431 -16.37115 -16.06781 -15.85355 -15.64748 -15.17354 -14.81809 -14.61495 -14.39150 -14.35722 -13.91093 -13.73343 -13.66729 -13.41367 -13.13920 -12.88811 -12.72179 -12.56451 -12.09042 -12.03309 -11.91413 -11.60213 -11.49781 -11.35815 -11.14790 -10.87306 -10.86313 -10.70221 -10.53853 -10.13141 -9.95785 -9.93136 -9.71555 -9.46252 -9.28539 -8.98674 -8.97593 -8.55834 -8.28377 -7.05067 -5.81528 -3.11415 0.87652 1.30328 2.34118 2.75376 3.11172 3.38620 3.44240 3.46202 3.57926 3.99014 4.33423 4.41984 4.59268 4.67856 4.71953 4.80434 4.87582 5.12558 5.14791 5.18807 5.27503 5.41107 5.44488 5.46469 5.49277 5.53244 5.60845 5.61477 5.77852 5.85881 5.92455 5.94610 6.01930 6.09384 6.16075 6.19338 6.24873 6.36161 6.42350 6.45028 6.55754 6.62017 6.78430 6.88292 6.95692 6.99465 7.10872 7.64555 7.88536 7.97996 8.34947 8.60958 9.47118 10.01640 10.38012 11.40041 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012482 B = 0.002540 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.720318 B =11021.299649 C =12428.614425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 C 0.504 3.496 4 O -0.509 6.509 5 N -0.676 5.676 6 C 0.126 3.874 7 C -0.124 4.124 8 C -0.107 4.107 9 C -0.092 4.092 10 C -0.111 4.111 11 C 0.554 3.446 12 O -0.546 6.546 13 N -0.706 5.706 14 C 0.119 3.881 15 C 0.193 3.807 16 H 0.055 0.945 17 N -0.717 5.717 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.009 4.009 21 N -0.927 5.927 22 Si 0.902 3.098 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.159 4.159 27 C -0.196 4.196 28 C -0.156 4.156 29 C -0.064 4.064 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.410 0.590 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.409 0.591 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.105 0.895 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.070 -20.251 -6.993 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.180 4.180 3 C 0.292 3.708 4 O -0.383 6.383 5 N -0.322 5.322 6 C 0.032 3.968 7 C -0.144 4.144 8 C -0.126 4.126 9 C -0.112 4.112 10 C -0.114 4.114 11 C 0.340 3.660 12 O -0.425 6.425 13 N -0.358 5.358 14 C -0.006 4.006 15 C 0.082 3.918 16 H 0.073 0.927 17 N -0.358 5.358 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.206 4.206 21 N -0.575 5.575 22 Si 0.733 3.267 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.180 4.180 27 C -0.234 4.234 28 C -0.193 4.193 29 C -0.085 4.085 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.246 0.754 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.247 0.753 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.123 0.877 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.871 -19.680 -7.365 21.031 hybrid contribution 1.258 0.382 1.025 1.667 sum 2.130 -19.298 -6.340 20.424 Atomic orbital electron populations 1.21560 0.92622 1.01785 1.03805 1.21630 0.99047 0.92848 1.04499 1.21082 0.81627 0.92481 0.75646 1.90803 1.54902 1.46113 1.46433 1.43517 1.07945 1.06902 1.73809 1.17592 0.95676 0.84398 0.99095 1.21032 0.96676 0.97696 0.99043 1.20906 1.00330 0.91664 0.99697 1.21494 0.93785 1.00176 0.95716 1.19921 0.96378 0.93820 1.01332 1.18183 0.84623 0.82873 0.80309 1.90746 1.24541 1.84229 1.42991 1.45878 1.29109 1.05858 1.54969 1.21619 0.95910 0.85932 0.97091 1.20062 0.95327 0.89041 0.87359 0.92669 1.42469 1.35885 1.58160 0.99283 1.19149 1.05325 1.22020 0.90364 0.91143 1.24726 0.99101 1.00711 0.96035 1.69666 1.39074 1.47093 1.01659 0.86277 0.81842 0.80334 0.78226 1.21772 1.21858 1.20801 1.23024 0.99398 0.95451 1.00170 1.22966 1.02254 1.06713 0.91486 1.22781 1.03692 0.95165 0.97697 1.21340 1.00029 0.90364 0.96773 0.91696 0.91885 0.91746 0.88664 0.88639 0.75445 0.85510 0.84868 0.84711 0.75280 0.91525 0.91647 0.77996 0.93466 0.89105 0.89543 0.90086 0.90229 0.87713 0.83172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.20 37.16 0.34 -0.69 16 2 C -0.14 -0.85 6.42 -27.88 -0.18 -1.03 16 3 C 0.50 5.35 7.67 -10.98 -0.08 5.27 16 4 O -0.51 -8.04 13.42 5.55 0.07 -7.97 16 5 N -0.68 -6.07 5.34 -9.89 -0.05 -6.12 16 6 C 0.13 1.54 6.29 -83.74 -0.53 1.01 16 7 C -0.12 -1.28 9.96 -39.31 -0.39 -1.68 16 8 C -0.11 -1.23 10.02 -39.67 -0.40 -1.63 16 9 C -0.09 -1.29 9.54 -39.16 -0.37 -1.67 16 10 C -0.11 -1.81 5.87 -104.99 -0.62 -2.42 16 11 C 0.55 10.36 7.77 -12.33 -0.10 10.26 16 12 O -0.55 -11.84 16.35 5.32 0.09 -11.75 16 13 N -0.71 -12.50 5.34 -61.25 -0.33 -12.83 16 14 C 0.12 2.11 5.22 -4.04 -0.02 2.09 16 15 C 0.19 3.62 2.70 -67.93 -0.18 3.43 16 16 H 0.06 1.04 7.84 -51.93 -0.41 0.63 16 17 N -0.72 -16.42 4.54 -53.43 -0.24 -16.66 16 18 C -0.24 -6.00 8.63 -15.06 -0.13 -6.13 16 19 H 0.07 1.74 6.91 -52.49 -0.36 1.38 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.93 -26.70 13.06 55.49 0.72 -25.98 16 22 Si 0.90 21.38 29.55 -169.99 -5.02 16.35 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C -0.16 -2.80 5.36 -90.62 -0.49 -3.29 16 27 C -0.20 -3.01 10.18 -26.69 -0.27 -3.28 16 28 C -0.16 -2.79 9.78 -26.69 -0.26 -3.05 16 29 C -0.06 -1.01 8.23 -38.98 -0.32 -1.33 16 30 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.41 1.94 8.82 -40.82 -0.36 1.58 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 38 H 0.14 1.85 6.40 -52.49 -0.34 1.52 16 39 H 0.41 7.11 6.17 -40.82 -0.25 6.86 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.39 9.78 7.80 -40.82 -0.32 9.46 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.09 1.58 8.11 -51.93 -0.42 1.16 16 45 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 46 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 48 H 0.10 2.08 6.23 -51.93 -0.32 1.75 16 49 H 0.15 2.71 5.82 -52.48 -0.31 2.41 16 LS Contribution 407.03 15.07 6.13 6.13 Total: -1.00 -33.65 407.03 -10.00 -43.65 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -7.29 Total: 19.64 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -4.09 Total: -4.47 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.10 Total: -61.58 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.16 Total: -19.72 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.65 -10.00 -43.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265358988.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.871 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds